Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010917

Physical Location & Seq

Genomic Coordinates Forward (+)

63025928 .. 63029815

Gene Structure 3888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG443600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATAAAGGAGCCCAACCCTAAGAGAATGCATATGACCGAGGATAAGGCAGAGAATCAGAAAAGCAAAGAAGAGGATAAAGCAAGCTGCTCTTCATCTTCTTCGACCGCCATTGTCAGTAACAACCAGCTCATGAGAATTGAGACTGGGATTTTGAGCAAAATCCCACCTGAGCTGTTCCGTCACATCCTCAAGTTCCTATCTTCTGAGGATCTCATTGCTTGTTCACTCGCCTGTAGATTTCTGAATCATGCAGCTTCTGATGAATCCTTGTGGCAACGCTTGTATCGTATGCGATGGGGTCTTTTGCCCCCTACCAGAAAGTTGCGGGAATGTCCTTGGAAAAAGCTTTACATTGAGCGTGATGAAGAGGACATGGTGGATCTTGGTAGAAATTGCCCGGTTGAGTTCAAGCAGTACTATGTCCAAATGCAAGCTGCCAAAAGAAGCCAAGCACCTCTTCCTTCACAGGCGAAAGATGATGGGTTAATTCTTGACAAGACAGTAGCTGATCAAGTGTCTATCTGGAAAAGAAGTAAAGGCCTGACTGATAAGGTGGTAACTGATCATACTTGTTCCGGTGAAAAGTGTACTTACTACCAAGTTGGAGATGTGTTTGTTTGCGAGAAGACTGGGCAGGTTCATGTATGTGATGAGTTTTGCAGAGAAGCTGTTATGGATCCCGCTAATATGCTTTGGGTCTGTAGAATATCTGGTCATTGCTTTGATAATGTACTGTCACCACAAGAAGTGGAGTCAGATGCAGAACAGCAACAGGAAGACCCGACAGATGAGCCAGAACCATTCATGGGATCCGGCCGCTTTGCGCGAGCTTATTTGTTGGGATATAACTGTGCGGATGAGAAAGAGCTGGAAGCTACTTGGAGGTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like Herpes_UL92

Protein Analysis

298

Amino Acids

34.21

Weight (kDa)

5.34

Isoelectric Point (pI)

55.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	52 - 93	1.6e-07	F-box domain
F-box-like	PF12937	53 - 97	1.7e-12	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45360
fragaria_vesca	FvH4_2g37370 FvH4_2g37370
malus_domestica	MD15G1000900.v1.1
prunus_persica	Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1
pyrus_communis	pycom15g00030
rosa_chinensis	RchiOBHm_Chr6g0304341
rosa_laevigata	RLG00000010988
rosa_multiflora	Rmu_ssc0000218.1_g000040
rosa_roxburghii	Rroxscaffold_7G00163820
rosa_rugosa	Rorug06G0330400 Rorug06G0330500 Rorug06G0330600
rosa_samantha	Rh6AG443600 Rh6BG458800 Rh6CG456400 Rh6DG443100
rosa_wichuraiana	Rw6G038500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	628
AccII	CGCG	1 cut(s)	829
AciI	CCGC	5 cut(s)	108, 328, 684, 820, 857
AclWI	GGATC	6 cut(s)	219, 390, 674, 687, 807, 820
AcoI	YGGCCR	1 cut(s)	817
AfaI	GTAC	3 cut(s)	419, 592, 735
AfiI	CCNNNNNNNGG	1 cut(s)	809
AgsI	TTSAA	1 cut(s)	412
AjuI	GAANNNNNNNTTGG	2 cut(s)	444, 476
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	6 cut(s)	219, 390, 674, 687, 807, 820
AlwNI	CAGNNNCTG	2 cut(s)	260, 509
AoxI	GGCC	2 cut(s)	541, 817
ApeKI	GCWGC	3 cut(s)	87, 254, 437
ArsI	GACNNNNNNTTYG	2 cut(s)	136, 168
AspLEI	GCGC	1 cut(s)	829
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	593, 732
BaeI	ACNNNNGTAYC	2 cut(s)	269, 302
BamHI	GGATCC	2 cut(s)	679, 812
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	2 cut(s)	635, 786
BbvI	GCAGC	3 cut(s)	74, 266, 424
BccI	CCATC	2 cut(s)	291, 476
BclI	TGATCA	2 cut(s)	511, 565
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	137
BfmI	CTRYAG	2 cut(s)	235, 703
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	4 cut(s)	88, 255, 438, 820
BlsI	GCNGC	4 cut(s)	89, 256, 439, 821
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	1 cut(s)	401
BmiI	GGNNCC	3 cut(s)	12, 681, 814
BmrFI	CCNGG	1 cut(s)	401
BmrI	ACTGGG	2 cut(s)	156, 642
BmsI	GCATC	1 cut(s)	751
BmuI	ACTGGG	2 cut(s)	156, 642
BpiI	GAAGAC	2 cut(s)	635, 786
Bpu10I	CCTNAGC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	39, 338
BsaWI	WCCGGW	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	1 cut(s)	809
Bse1I	ACTGG	2 cut(s)	151, 637
Bse3DI	GCAATG	2 cut(s)	216, 718
BseDI	CCNNGG	2 cut(s)	39, 338
BseGI	GGATG	2 cut(s)	186, 865
BseLI	CCNNNNNNNGG	1 cut(s)	809
BseMI	GCAATG	2 cut(s)	216, 718
BseMII	CTCAG	2 cut(s)	162, 198
BseNI	ACTGG	2 cut(s)	151, 637
BseX3I	CGGCCG	1 cut(s)	817
BseXI	GCAGC	3 cut(s)	74, 266, 424
Bsh1236I	CGCG	1 cut(s)	829
Bsh1285I	CGRYCG	2 cut(s)	108, 820
BshFI	GGCC	2 cut(s)	543, 819
BsiEI	CGRYCG	2 cut(s)	108, 820
BsiSI	CCGG	3 cut(s)	401, 579, 816
BslI	CCNNNNNNNGG	1 cut(s)	809
BsmAI	GTCTC	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	543, 819
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	6 cut(s)	211, 382, 511, 565, 679, 812
BspACI	CCGC	5 cut(s)	108, 328, 684, 820, 857
BspANI	GGCC	2 cut(s)	543, 819
BspCNI	CTCAG	2 cut(s)	163, 199
BspFNI	CGCG	1 cut(s)	829
BspHI	TCATGA	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	12, 681, 814
BspMI	ACCTGC	1 cut(s)	628
BspPI	GGATC	6 cut(s)	219, 390, 674, 687, 807, 820
BspQI	GCTCTTC	1 cut(s)	97
BsrDI	GCAATG	2 cut(s)	216, 718
BsrI	ACTGG	2 cut(s)	151, 637
BssECI	CCNNGG	2 cut(s)	39, 338
BssMI	GATC	6 cut(s)	211, 382, 511, 565, 679, 812
BssT1I	CCWWGG	1 cut(s)	338
Bst4CI	ACNGT	3 cut(s)	505, 738, 854
Bst6I	CTCTTC	4 cut(s)	66, 97, 363, 465
BstC8I	GCNNGC	3 cut(s)	85, 435, 831
BstDEI	CTNAG	3 cut(s)	21, 171, 207
BstF5I	GGATG	2 cut(s)	186, 865
BstFNI	CGCG	1 cut(s)	829
BstHHI	GCGC	1 cut(s)	829
BstKTI	GATC	6 cut(s)	214, 385, 514, 568, 682, 815
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	6 cut(s)	211, 382, 511, 565, 679, 812
BstMCI	CGRYCG	2 cut(s)	108, 820
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	2 cut(s)	235, 703
BstUI	CGCG	1 cut(s)	829
BstV1I	GCAGC	3 cut(s)	74, 266, 424
BstV2I	GAAGAC	2 cut(s)	635, 786
BstX2I	RGATCY	4 cut(s)	211, 382, 679, 812
BstYI	RGATCY	4 cut(s)	211, 382, 679, 812
BstZI	CGGCCG	1 cut(s)	817
BsuRI	GGCC	2 cut(s)	543, 819
BtgZI	GCGATG	1 cut(s)	310
BtsCI	GGATG	2 cut(s)	186, 865
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	3 cut(s)	85, 435, 831
CaiI	CAGNNNCTG	2 cut(s)	260, 509
CciI	TCATGA	1 cut(s)	132
CfoI	GCGC	1 cut(s)	829
Csp6I	GTAC	3 cut(s)	418, 591, 734
CviAII	CATG	5 cut(s)	133, 251, 376, 644, 808
CviQI	GTAC	3 cut(s)	418, 591, 734
DdeI	CTNAG	3 cut(s)	21, 171, 207
DpnI	GATC	6 cut(s)	213, 384, 513, 567, 681, 814
DpnII	GATC	6 cut(s)	211, 382, 511, 565, 679, 812
EaeI	YGGCCR	1 cut(s)	817
EagI	CGGCCG	1 cut(s)	817
Eam1104I	CTCTTC	4 cut(s)	66, 97, 363, 465
EarI	CTCTTC	4 cut(s)	66, 97, 363, 465
EclXI	CGGCCG	1 cut(s)	817
Eco130I	CCWWGG	1 cut(s)	338
Eco147I	AGGCCT	1 cut(s)	543
Eco24I	GRGCYC	1 cut(s)	15
Eco52I	CGGCCG	1 cut(s)	817
EcoT14I	CCWWGG	1 cut(s)	338
EcoT22I	ATGCAT	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	338
FaeI	CATG	5 cut(s)	136, 254, 379, 647, 811
FalI	AAGNNNNNCTT	4 cut(s)	76, 108, 444, 476
FatI	CATG	5 cut(s)	132, 250, 375, 643, 807
FauI	CCCGC	2 cut(s)	321, 691
FauNDI	CATATG	1 cut(s)	33
FbaI	TGATCA	2 cut(s)	511, 565
Fnu4HI	GCNGC	4 cut(s)	88, 255, 438, 820
FokI	GGATG	2 cut(s)	173, 872
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	4 cut(s)	88, 255, 438, 820
GlaI	GCGC	1 cut(s)	828
GluI	GCNGC	4 cut(s)	88, 255, 438, 820
HaeIII	GGCC	2 cut(s)	543, 819
HapII	CCGG	3 cut(s)	401, 579, 816
HhaI	GCGC	1 cut(s)	829
Hin1II	CATG	5 cut(s)	136, 254, 379, 647, 811
Hin6I	GCGC	1 cut(s)	827
HinP1I	GCGC	1 cut(s)	827
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	55, 247, 266, 755
HpaII	CCGG	3 cut(s)	401, 579, 816
HphI	GGTGA	2 cut(s)	593, 732
Hpy166II	GTNNAC	2 cut(s)	227, 591
Hpy188I	TCNGA	5 cut(s)	60, 208, 246, 262, 760
Hpy188III	TCNNGA	3 cut(s)	133, 494, 526
Hpy8I	GTNNAC	2 cut(s)	227, 591
HpyAV	CCTTC	1 cut(s)	474
HpyCH4III	ACNGT	3 cut(s)	505, 738, 854
HpyCH4V	TGCA	5 cut(s)	31, 254, 433, 663, 764
HpyF3I	CTNAG	3 cut(s)	21, 171, 207
Hsp92II	CATG	5 cut(s)	136, 254, 379, 647, 811
HspAI	GCGC	1 cut(s)	827
Ksp22I	TGATCA	2 cut(s)	511, 565
Kzo9I	GATC	6 cut(s)	211, 382, 511, 565, 679, 812
LguI	GCTCTTC	1 cut(s)	97
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	3 cut(s)	74, 266, 424
LweI	GCATC	1 cut(s)	751
MaeIII	GTNAC	4 cut(s)	119, 182, 559, 738
MalI	GATC	6 cut(s)	213, 384, 513, 567, 681, 814
MboI	GATC	6 cut(s)	211, 382, 511, 565, 679, 812
MboII	GAAGA	9 cut(s)	83, 84, 90, 93, 195, 380, 452, 640, 791
MflI	RGATCY	4 cut(s)	211, 382, 679, 812
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	138, 394, 489
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	7 cut(s)	34, 67, 200, 202, 364, 468, 879
Mph1103I	ATGCAT	1 cut(s)	33
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	1 cut(s)	648
MspI	CCGG	3 cut(s)	401, 579, 816
MspR9I	CCNGG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	33
MvnI	CGCG	1 cut(s)	829
NciI	CCSGG	1 cut(s)	401
NdeI	CATATG	1 cut(s)	33
NdeII	GATC	6 cut(s)	211, 382, 511, 565, 679, 812
NlaIII	CATG	5 cut(s)	136, 254, 379, 647, 811
NlaIV	GGNNCC	3 cut(s)	12, 681, 814
NmuCI	GTSAC	2 cut(s)	182, 738
NsiI	ATGCAT	1 cut(s)	33
PagI	TCATGA	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	543
PciSI	GCTCTTC	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	286
PctI	GAATGC	1 cut(s)	33
PfeI	GAWTC	3 cut(s)	55, 247, 266
PkrI	GCNGC	4 cut(s)	89, 256, 439, 821
PleI	GAGTC	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	763
PspN4I	GGNNCC	3 cut(s)	12, 681, 814
PstNI	CAGNNNCTG	2 cut(s)	260, 509
PsuI	RGATCY	4 cut(s)	211, 382, 679, 812
RsaI	GTAC	3 cut(s)	419, 592, 735
RsaNI	GTAC	3 cut(s)	418, 591, 734
RseI	CAYNNNNRTG	1 cut(s)	648
SapI	GCTCTTC	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	4 cut(s)	88, 255, 438, 820
Sau3AI	GATC	6 cut(s)	211, 382, 511, 565, 679, 812
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	1 cut(s)	15
SfaNI	GCATC	1 cut(s)	751
SfcI	CTRYAG	2 cut(s)	235, 703
SmiMI	CAYNNNNRTG	1 cut(s)	648
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	138, 394, 489
SseBI	AGGCCT	1 cut(s)	543
SsiI	CCGC	5 cut(s)	108, 328, 684, 820, 857
StuI	AGGCCT	1 cut(s)	543
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	338
TaaI	ACNGT	3 cut(s)	505, 738, 854
TaqI	TCGA	1 cut(s)	104
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	3 cut(s)	138, 394, 489
TatI	WGTACW	3 cut(s)	417, 590, 733
TauI	GCSGC	1 cut(s)	822
TfiI	GAWTC	3 cut(s)	55, 247, 266
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TseFI	GTSAC	2 cut(s)	182, 738
TseI	GCWGC	3 cut(s)	87, 254, 437
Tsp45I	GTSAC	2 cut(s)	182, 738
TspDTI	ATGAA	5 cut(s)	84, 279, 381, 632, 796
TspGWI	ACGGA	1 cut(s)	170
ZrmI	AGTACT	1 cut(s)	419
Zsp2I	ATGCAT	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.