Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0010917

Physical Location & Seq

Genomic Coordinates Forward (+)

68428 .. 72055

Gene Structure 3628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1000900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGACTATATCAGAGGATGAGGACGAGAGTTTGGCTCATTTCCTTGAATCGGAGGTGCTCTCCGAGGTTTCAGAAGACAAGGAGGAGGAGGAGGAGGAGGATGAGGTAACAGAGGCCCCCAAAGCAAAGAAAATGCGACTAGTGGAGGATACGGCTGAGAAAGACCCTCAATTTCAGAAAAGCGCATCTTCTTCCGGGTTTGTTCAGTCAAAAAGCGCCATCGGCTGCAGTAGCAATAGCGGGAACACGCCCGTGAGGATTGAAACTGGCATTTTCAGCAAAATCCCTCCTGAACTCTTCCCTCACATCCTCAAGTTCCTCTCTTCTGAAGATCTATTTGCTTGCTCTCTCGTCTGTAGATTTCTAAGTCATGTCGCATCCGATGAATCCTTATGGCGCCGCCTGTACTGTATGCGATGGGGTCATTTGCCCCCTAGTAGAAAGCTGCGTGAATGTCCATGGAAAAAACTTTATATTCAGCGTGATGAGGAGGATACGGTAGAACTTGTTAGGAATTGCACACTTGAGTTCAAGGAATATTTTATTCAAATGCAAGCTGCGAAAAGAAGCCAAGCACCTCTTCCTTCACAGGTGAATGATGACGGGATAATTCTTGACACAACAGTAGCTGATCAAGTGTCTATATGGAAAAGTAGTAGAGGCCTAACTGATAAGGCGGAAGCTGATCATGCTTGTTCAGGTGAAAAGTGCACTTACTACCAAATTGGAGATGTATTTGTCTGTGAGAACACTGGCCAGGTTCATGTATGTGATGATAATTGCAGAGAAGTTGTTATGGATCCGACCAATGAGCTTTGGGTCTGCACAATATCTGGGCACTGTTTCGATAGGCTCCTATCACCAGAAGAAACGGAGTCAGATGCTCAGCAGCAAGGAGCTGTGACAGACGAGGCAGAACCATTCATGGGATCTGGGCGCTTTGCAAGAGCTTATATGATGGGATATAATTGTGTTGATGAGAAGGAGCTAGAGGATGCTTTGAGATTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like Herpes_UL92

Protein Analysis

338

Amino Acids

38.16

Weight (kDa)

4.57

Isoelectric Point (pI)

57.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	92 - 133	1.5e-07	F-box domain
F-box-like	PF12937	93 - 137	3.3e-13	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45360
fragaria_vesca	FvH4_2g37370 FvH4_2g37370
malus_domestica	MD15G1000900.v1.1
prunus_persica	Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1
pyrus_communis	pycom15g00030
rosa_chinensis	RchiOBHm_Chr6g0304341
rosa_laevigata	RLG00000010988
rosa_multiflora	Rmu_ssc0000218.1_g000040
rosa_roxburghii	Rroxscaffold_7G00163820
rosa_rugosa	Rorug06G0330400 Rorug06G0330500 Rorug06G0330600
rosa_samantha	Rh6AG443600 Rh6BG458800 Rh6CG456400 Rh6DG443100
rosa_wichuraiana	Rw6G038500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	396
AciI	CCGC	3 cut(s)	240, 400, 677
AclWI	GGATC	3 cut(s)	794, 807, 937
AcoI	YGGCCR	1 cut(s)	754
AcuI	CTGAAG	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	397
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	2 cut(s)	49, 926
AgsI	TTSAA	4 cut(s)	47, 263, 532, 548
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	756
AjuI	GAANNNNNNNTTGG	2 cut(s)	564, 596
AleI	CACNNNNGTG	1 cut(s)	251
AluBI	AGCT	8 cut(s)	445, 557, 629, 683, 814, 899, 950, 988
AluI	AGCT	8 cut(s)	445, 557, 629, 683, 814, 899, 950, 988
Alw21I	GWGCWC	2 cut(s)	60, 713
Alw44I	GTGCAC	1 cut(s)	709
AlwI	GGATC	3 cut(s)	794, 807, 937
AlwNI	CAGNNNCTG	1 cut(s)	629
AoxI	GGCC	3 cut(s)	114, 661, 754
ApaLI	GTGCAC	1 cut(s)	709
ApeKI	GCWGC	4 cut(s)	225, 445, 557, 889
AspLEI	GCGC	4 cut(s)	185, 218, 399, 939
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	3 cut(s)	604, 713, 852
BaeGI	GKGCMC	2 cut(s)	713, 840
BalI	TGGCCA	1 cut(s)	756
BamHI	GGATCC	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	2 cut(s)	60, 713
BbvI	GCAGC	4 cut(s)	212, 432, 544, 901
BccI	CCATC	3 cut(s)	227, 411, 952
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	758
BciVI	GTATCC	2 cut(s)	142, 487
BclI	TGATCA	2 cut(s)	631, 685
BcnI	CCSGG	1 cut(s)	196
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	3 cut(s)	140, 435, 989
BfmI	CTRYAG	2 cut(s)	226, 355
BfoI	RGCGCY	3 cut(s)	219, 400, 940
BfuI	GTATCC	2 cut(s)	142, 487
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	5 cut(s)	226, 400, 446, 558, 890
BlpI	GCTNAGC	1 cut(s)	885
BlsI	GCNGC	5 cut(s)	227, 401, 447, 559, 891
Bme1390I	CCNGG	2 cut(s)	196, 758
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	4 cut(s)	117, 398, 801, 854
BmrFI	CCNGG	2 cut(s)	196, 758
BmsI	GCATC	4 cut(s)	194, 386, 871, 985
BpiI	GAAGAC	1 cut(s)	81
BplI	GAGNNNNNCTC	4 cut(s)	19, 51, 44, 76
Bpu1102I	GCTNAGC	1 cut(s)	885
BpuEI	CTTGAG	2 cut(s)	296, 545
BpuMI	CCSGG	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	397
BsaJI	CCNNGG	2 cut(s)	63, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 926
Bse1I	ACTGG	2 cut(s)	271, 757
BseBI	CCWGG	1 cut(s)	758
BseDI	CCNNGG	2 cut(s)	63, 458
BseGI	GGATG	5 cut(s)	22, 106, 306, 377, 1000
BseLI	CCNNNNNNNGG	2 cut(s)	49, 926
BseMII	CTCAG	2 cut(s)	147, 899
BseNI	ACTGG	2 cut(s)	271, 757
BseRI	GAGGAG	6 cut(s)	98, 101, 104, 107, 110, 503
BseSI	GKGCMC	2 cut(s)	713, 840
BseXI	GCAGC	4 cut(s)	212, 432, 544, 901
BsgI	GTGCAG	1 cut(s)	808
BshFI	GGCC	3 cut(s)	116, 663, 756
BshNI	GGYRCC	1 cut(s)	396
BsiHKAI	GWGCWC	2 cut(s)	60, 713
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	2 cut(s)	49, 926
BsnI	GGCC	3 cut(s)	116, 663, 756
Bsp1286I	GDGCHC	3 cut(s)	60, 713, 840
Bsp143I	GATC	5 cut(s)	331, 631, 685, 799, 929
Bsp1720I	GCTNAGC	1 cut(s)	885
Bsp19I	CCATGG	1 cut(s)	458
BspACI	CCGC	3 cut(s)	240, 400, 677
BspANI	GGCC	3 cut(s)	116, 663, 756
BspCNI	CTCAG	2 cut(s)	148, 898
BspLI	GGNNCC	4 cut(s)	117, 398, 801, 854
BspMAI	CTGCAG	1 cut(s)	230
BspPI	GGATC	3 cut(s)	794, 807, 937
BspT107I	GGYRCC	1 cut(s)	396
BsrI	ACTGG	2 cut(s)	271, 757
BssECI	CCNNGG	2 cut(s)	63, 458
BssMI	GATC	5 cut(s)	331, 631, 685, 799, 929
BssNI	GRCGYC	1 cut(s)	397
BssT1I	CCWWGG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	758
Bst4CI	ACNGT	4 cut(s)	410, 499, 625, 842
Bst6I	CTCTTC	3 cut(s)	302, 328, 585
BstACI	GRCGYC	1 cut(s)	397
BstC8I	GCNNGC	2 cut(s)	343, 555
BstDEI	CTNAG	3 cut(s)	156, 365, 885
BstDSI	CCRYGG	1 cut(s)	458
BstF5I	GGATG	5 cut(s)	22, 106, 306, 377, 1000
BstH2I	RGCGCY	3 cut(s)	219, 400, 940
BstHHI	GCGC	4 cut(s)	185, 218, 399, 939
BstKTI	GATC	5 cut(s)	334, 634, 688, 802, 932
BstMBI	GATC	5 cut(s)	331, 631, 685, 799, 929
BstMWI	GCNNNNNNNGC	5 cut(s)	122, 222, 231, 276, 689
BstNI	CCWGG	1 cut(s)	758
BstSCI	CCNGG	2 cut(s)	194, 756
BstSFI	CTRYAG	2 cut(s)	226, 355
BstSLI	GKGCMC	2 cut(s)	713, 840
BstV1I	GCAGC	4 cut(s)	212, 432, 544, 901
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	3 cut(s)	331, 799, 929
BstYI	RGATCY	3 cut(s)	331, 799, 929
BsuI	GTATCC	2 cut(s)	142, 487
BsuRI	GGCC	3 cut(s)	116, 663, 756
BtgI	CCRYGG	1 cut(s)	458
BtgZI	GCGATG	1 cut(s)	430
BtsCI	GGATG	5 cut(s)	22, 106, 306, 377, 1000
BtsIMutI	CAGTG	2 cut(s)	750, 838
Cac8I	GCNNGC	2 cut(s)	343, 555
CaiI	CAGNNNCTG	1 cut(s)	629
CfoI	GCGC	4 cut(s)	185, 218, 399, 939
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	5 cut(s)	371, 459, 689, 764, 925
CviQI	GTAC	1 cut(s)	406
DdeI	CTNAG	3 cut(s)	156, 365, 885
DinI	GGCGCC	1 cut(s)	398
DpnI	GATC	5 cut(s)	333, 633, 687, 801, 931
DpnII	GATC	5 cut(s)	331, 631, 685, 799, 929
EaeI	YGGCCR	1 cut(s)	754
Eam1104I	CTCTTC	3 cut(s)	302, 328, 585
EarI	CTCTTC	3 cut(s)	302, 328, 585
EciI	GGCGGA	1 cut(s)	692
Eco130I	CCWWGG	1 cut(s)	458
Eco147I	AGGCCT	1 cut(s)	663
Eco57I	CTGAAG	1 cut(s)	348
EcoO109I	RGGNCCY	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	756
EcoT14I	CCWWGG	1 cut(s)	458
EgeI	GGCGCC	1 cut(s)	398
EheI	GGCGCC	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	458
FaeI	CATG	5 cut(s)	374, 462, 692, 767, 928
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 564, 596
FatI	CATG	5 cut(s)	370, 458, 688, 763, 924
FauI	CCCGC	1 cut(s)	233
FbaI	TGATCA	2 cut(s)	631, 685
Fnu4HI	GCNGC	5 cut(s)	226, 400, 446, 558, 890
FokI	GGATG	5 cut(s)	29, 113, 293, 364, 1007
Fsp4HI	GCNGC	5 cut(s)	226, 400, 446, 558, 890
FspBI	CTAG	3 cut(s)	140, 435, 989
GlaI	GCGC	4 cut(s)	184, 217, 398, 938
GluI	GCNGC	5 cut(s)	226, 400, 446, 558, 890
HaeII	RGCGCY	3 cut(s)	219, 400, 940
HaeIII	GGCC	3 cut(s)	116, 663, 756
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	4 cut(s)	185, 218, 399, 939
Hin1I	GRCGYC	1 cut(s)	397
Hin1II	CATG	5 cut(s)	374, 462, 692, 767, 928
Hin6I	GCGC	4 cut(s)	183, 216, 397, 937
HinP1I	GCGC	4 cut(s)	183, 216, 397, 937
HinfI	GANTC	3 cut(s)	47, 386, 875
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	3 cut(s)	604, 713, 852
Hpy166II	GTNNAC	1 cut(s)	711
Hpy188III	TCNNGA	2 cut(s)	290, 614
Hpy8I	GTNNAC	1 cut(s)	711
HpyAV	CCTTC	2 cut(s)	594, 976
HpyCH4III	ACNGT	4 cut(s)	410, 499, 625, 842
HpyCH4V	TGCA	7 cut(s)	228, 519, 553, 711, 783, 825, 944
HpyF10VI	GCNNNNNNNGC	5 cut(s)	122, 222, 231, 276, 689
HpyF3I	CTNAG	3 cut(s)	156, 365, 885
Hsp92I	GRCGYC	1 cut(s)	397
Hsp92II	CATG	5 cut(s)	374, 462, 692, 767, 928
HspAI	GCGC	4 cut(s)	183, 216, 397, 937
KasI	GGCGCC	1 cut(s)	396
Ksp22I	TGATCA	2 cut(s)	631, 685
Kzo9I	GATC	5 cut(s)	331, 631, 685, 799, 929
LmnI	GCTCC	3 cut(s)	858, 896, 985
Lsp1109I	GCAGC	4 cut(s)	212, 432, 544, 901
LweI	GCATC	4 cut(s)	194, 386, 871, 985
MaeI	CTAG	3 cut(s)	140, 435, 989
MaeIII	GTNAC	2 cut(s)	106, 901
MalI	GATC	5 cut(s)	333, 633, 687, 801, 931
MboI	GATC	5 cut(s)	331, 631, 685, 799, 929
MboII	GAAGA	8 cut(s)	86, 180, 183, 289, 315, 341, 572, 878
MflI	RGATCY	3 cut(s)	331, 799, 929
MhlI	GDGCHC	3 cut(s)	60, 713, 840
MlsI	TGGCCA	1 cut(s)	756
MluCI	AATT	6 cut(s)	170, 514, 609, 723, 778, 967
MluNI	TGGCCA	1 cut(s)	756
Mly113I	GGCGCC	1 cut(s)	397
MlyI	GAGTC	1 cut(s)	884
MmeI	TCCRAC	1 cut(s)	827
Mox20I	TGGCCA	1 cut(s)	756
MscI	TGGCCA	1 cut(s)	756
MslI	CAYNNNNRTG	2 cut(s)	251, 768
Msp20I	TGGCCA	1 cut(s)	756
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	196, 758
MvaI	CCWGG	1 cut(s)	758
MwoI	GCNNNNNNNGC	5 cut(s)	122, 222, 231, 276, 689
NarI	GGCGCC	1 cut(s)	397
NciI	CCSGG	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	458
NdeII	GATC	5 cut(s)	331, 631, 685, 799, 929
NlaIII	CATG	5 cut(s)	374, 462, 692, 767, 928
NlaIV	GGNNCC	4 cut(s)	117, 398, 801, 854
NmuCI	GTSAC	1 cut(s)	901
OliI	CACNNNNGTG	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	47, 386
PkrI	GCNGC	5 cut(s)	227, 401, 447, 559, 891
PleI	GAGTC	1 cut(s)	883
PluTI	GGCGCC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	883
Psp6I	CCWGG	1 cut(s)	756
PspGI	CCWGG	1 cut(s)	756
PspN4I	GGNNCC	4 cut(s)	117, 398, 801, 854
PspPI	GGNCC	1 cut(s)	115
PstI	CTGCAG	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	629
PsuI	RGATCY	3 cut(s)	331, 799, 929
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	2 cut(s)	251, 768
SatI	GCNGC	5 cut(s)	226, 400, 446, 558, 890
Sau3AI	GATC	5 cut(s)	331, 631, 685, 799, 929
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	2 cut(s)	196, 758
SduI	GDGCHC	3 cut(s)	60, 713, 840
SfaNI	GCATC	4 cut(s)	194, 386, 871, 985
SfcI	CTRYAG	2 cut(s)	226, 355
SfoI	GGCGCC	1 cut(s)	398
SmiMI	CAYNNNNRTG	2 cut(s)	251, 768
SmlI	CTYRAG	2 cut(s)	311, 524
SmoI	CTYRAG	2 cut(s)	311, 524
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	6 cut(s)	170, 514, 609, 723, 778, 967
SseBI	AGGCCT	1 cut(s)	663
SsiI	CCGC	3 cut(s)	240, 400, 677
SspDI	GGCGCC	1 cut(s)	396
SspI	AATATT	1 cut(s)	539
SspMI	CTAG	3 cut(s)	140, 435, 989
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	2 cut(s)	194, 756
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	4 cut(s)	410, 499, 625, 842
TaqI	TCGA	1 cut(s)	846
TasI	AATT	6 cut(s)	170, 514, 609, 723, 778, 967
TatI	WGTACW	1 cut(s)	405
TauI	GCSGC	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	47, 386
TscAI	CASTG	2 cut(s)	757, 845
TseFI	GTSAC	1 cut(s)	901
TseI	GCWGC	4 cut(s)	225, 445, 557, 889
Tsp45I	GTSAC	1 cut(s)	901
TspDTI	ATGAA	3 cut(s)	399, 752, 913
TspGWI	ACGGA	1 cut(s)	887
TspRI	CASTG	2 cut(s)	757, 845
VneI	GTGCAC	1 cut(s)	709
XspI	CTAG	3 cut(s)	140, 435, 989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.