Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010917

Physical Location & Seq

Genomic Coordinates Forward (+)

63156028 .. 63158925

Gene Structure 2898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG456400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGAATTGACACTGGGATTTTGAGCAAAATCCCACCCGAGCTGTTCCGTCACATCCTCAAGTTCCTATCTTCTGAGGATCTCATTGCTTGTTCACTCGTCTGTAGATTTCTGAATCATGCAGCTTCTGATGAATCCTTGTGGCAACGCTTGTATCGTATGCGATGGGGTCTTTTGCCCCCTACCAGAAAGCTACGCGAATGTCCTTGGAAAAAGCTTTACATTGAGGCGAAAGATGATGGGTTAATTCTTGACAAGACAGTAGCTGATCAAGTGTCCATCTGGAAAAGAAGTAAAGGCCTGACTGATAAGGTGGTAACTGATCATACTTGTTCCGGTGAAAAGTGTACTTACTACCAAGTTGGAGATGTGTTTGTTTGCGAGAAGACTGGGCAGGTTCATGTATGTGATGAGTTTTGCAGAGAAGCTGTTATGGATCCCGCTAATATGCTTTGGGTCTGTAGAATATCTGGTCATTGCTTTGATAATGTACTGTCACCACAAGAAGTGGAGTCAGATGCAGAACAGCAACAGGAAGATCCGACAGATGAGCCAGAACCATTCATGGGATCCGGCCGCTTTGCGCGAGCTTATTTGCTGGGATATAACTGTGCGGATGAGAAAGAGCTAGAAGCTACTTGGAGGTTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like Herpes_UL92

Protein Analysis

217

Amino Acids

25.02

Weight (kDa)

5.21

Isoelectric Point (pI)

43.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 49	2.7e-09	F-box domain
F-box-like	PF12937	9 - 53	6.2e-14	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45360
fragaria_vesca	FvH4_2g37370 FvH4_2g37370
malus_domestica	MD15G1000900.v1.1
prunus_persica	Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1
pyrus_communis	pycom15g00030
rosa_chinensis	RchiOBHm_Chr6g0304341
rosa_laevigata	RLG00000010988
rosa_multiflora	Rmu_ssc0000218.1_g000040
rosa_roxburghii	Rroxscaffold_7G00163820
rosa_rugosa	Rorug06G0330400 Rorug06G0330500 Rorug06G0330600
rosa_samantha	Rh6AG443600 Rh6BG458800 Rh6CG456400 Rh6DG443100
rosa_wichuraiana	Rw6G038500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	385
AccII	CGCG	2 cut(s)	198, 586
AciI	CCGC	3 cut(s)	441, 577, 614
AclWI	GGATC	6 cut(s)	87, 431, 444, 533, 564, 577
AcoI	YGGCCR	1 cut(s)	574
AfaI	GTAC	2 cut(s)	349, 492
AfiI	CCNNNNNNNGG	1 cut(s)	566
AluBI	AGCT	9 cut(s)	43, 125, 193, 217, 266, 428, 590, 628, 635
AluI	AGCT	9 cut(s)	43, 125, 193, 217, 266, 428, 590, 628, 635
AlwI	GGATC	6 cut(s)	87, 431, 444, 533, 564, 577
AlwNI	CAGNNNCTG	2 cut(s)	128, 266
Ama87I	CYCGRG	1 cut(s)	38
AoxI	GGCC	2 cut(s)	298, 574
ApeKI	GCWGC	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	586
AsuHPI	GGTGA	2 cut(s)	350, 489
AvaI	CYCGRG	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	137, 170
BamHI	GGATCC	2 cut(s)	436, 569
BbsI	GAAGAC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	134
BccI	CCATC	3 cut(s)	159, 233, 287
BclI	TGATCA	2 cut(s)	268, 322
BfaI	CTAG	1 cut(s)	629
BfmI	CTRYAG	2 cut(s)	103, 460
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	2 cut(s)	123, 577
BlsI	GCNGC	2 cut(s)	124, 578
BmeT110I	CYCGRG	1 cut(s)	38
BmiI	GGNNCC	2 cut(s)	438, 571
BmrI	ACTGGG	2 cut(s)	24, 399
BmsI	GCATC	1 cut(s)	508
BmuI	ACTGGG	2 cut(s)	24, 399
BpiI	GAAGAC	1 cut(s)	392
BpuEI	CTTGAG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	1 cut(s)	566
Bse1I	ACTGG	2 cut(s)	19, 394
Bse3DI	GCAATG	2 cut(s)	84, 475
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	2 cut(s)	54, 622
BseLI	CCNNNNNNNGG	1 cut(s)	566
BseMI	GCAATG	2 cut(s)	84, 475
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	19, 394
BseX3I	CGGCCG	1 cut(s)	574
BseXI	GCAGC	1 cut(s)	134
BseYI	CCCAGC	1 cut(s)	598
Bsh1236I	CGCG	2 cut(s)	198, 586
Bsh1285I	CGRYCG	1 cut(s)	577
BshFI	GGCC	2 cut(s)	300, 576
BsiEI	CGRYCG	1 cut(s)	577
BsiHKCI	CYCGRG	1 cut(s)	38
BsiSI	CCGG	2 cut(s)	336, 573
BslI	CCNNNNNNNGG	1 cut(s)	566
BsnI	GGCC	2 cut(s)	300, 576
BsoBI	CYCGRG	1 cut(s)	38
Bsp143I	GATC	6 cut(s)	79, 268, 322, 436, 538, 569
BspACI	CCGC	3 cut(s)	441, 577, 614
BspANI	GGCC	2 cut(s)	300, 576
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	2 cut(s)	198, 586
BspLI	GGNNCC	2 cut(s)	438, 571
BspMI	ACCTGC	1 cut(s)	385
BspPI	GGATC	6 cut(s)	87, 431, 444, 533, 564, 577
BsrDI	GCAATG	2 cut(s)	84, 475
BsrI	ACTGG	2 cut(s)	19, 394
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	6 cut(s)	79, 268, 322, 436, 538, 569
BssT1I	CCWWGG	1 cut(s)	206
Bst4CI	ACNGT	3 cut(s)	262, 495, 611
BstC8I	GCNNGC	1 cut(s)	588
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	54, 622
BstFNI	CGCG	2 cut(s)	198, 586
BstHHI	GCGC	1 cut(s)	586
BstKTI	GATC	6 cut(s)	82, 271, 325, 439, 541, 572
BstMBI	GATC	6 cut(s)	79, 268, 322, 436, 538, 569
BstMCI	CGRYCG	1 cut(s)	577
BstSFI	CTRYAG	2 cut(s)	103, 460
BstUI	CGCG	2 cut(s)	198, 586
BstV1I	GCAGC	1 cut(s)	134
BstV2I	GAAGAC	1 cut(s)	392
BstX2I	RGATCY	4 cut(s)	79, 436, 538, 569
BstYI	RGATCY	4 cut(s)	79, 436, 538, 569
BstZI	CGGCCG	1 cut(s)	574
BsuRI	GGCC	2 cut(s)	300, 576
BtgZI	GCGATG	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	54, 622
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	1 cut(s)	588
CaiI	CAGNNNCTG	2 cut(s)	128, 266
CfoI	GCGC	1 cut(s)	586
Csp6I	GTAC	2 cut(s)	348, 491
CviAII	CATG	3 cut(s)	119, 401, 565
CviQI	GTAC	2 cut(s)	348, 491
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	6 cut(s)	81, 270, 324, 438, 540, 571
DpnII	GATC	6 cut(s)	79, 268, 322, 436, 538, 569
EaeI	YGGCCR	1 cut(s)	574
EagI	CGGCCG	1 cut(s)	574
EclXI	CGGCCG	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	206
Eco147I	AGGCCT	1 cut(s)	300
Eco52I	CGGCCG	1 cut(s)	574
Eco88I	CYCGRG	1 cut(s)	38
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	122, 404, 568
FaiI	YATR	9 cut(s)	120, 161, 327, 402, 406, 434, 449, 566, 606
FatI	CATG	3 cut(s)	118, 400, 564
FauI	CCCGC	1 cut(s)	448
FbaI	TGATCA	2 cut(s)	268, 322
Fnu4HI	GCNGC	2 cut(s)	123, 577
FokI	GGATG	2 cut(s)	41, 629
Fsp4HI	GCNGC	2 cut(s)	123, 577
FspBI	CTAG	1 cut(s)	629
GlaI	GCGC	1 cut(s)	585
GluI	GCNGC	2 cut(s)	123, 577
GsaI	CCCAGC	1 cut(s)	602
HaeIII	GGCC	2 cut(s)	300, 576
HapII	CCGG	2 cut(s)	336, 573
HhaI	GCGC	1 cut(s)	586
Hin1II	CATG	3 cut(s)	122, 404, 568
Hin6I	GCGC	1 cut(s)	584
HinP1I	GCGC	1 cut(s)	584
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	3 cut(s)	115, 134, 512
HpaII	CCGG	2 cut(s)	336, 573
HphI	GGTGA	2 cut(s)	350, 489
Hpy166II	GTNNAC	2 cut(s)	95, 348
Hpy188I	TCNGA	5 cut(s)	76, 114, 130, 517, 543
Hpy188III	TCNNGA	2 cut(s)	251, 283
Hpy8I	GTNNAC	2 cut(s)	95, 348
HpyCH4III	ACNGT	3 cut(s)	262, 495, 611
HpyCH4V	TGCA	3 cut(s)	122, 420, 521
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	3 cut(s)	122, 404, 568
HspAI	GCGC	1 cut(s)	584
Ksp22I	TGATCA	2 cut(s)	268, 322
Kzo9I	GATC	6 cut(s)	79, 268, 322, 436, 538, 569
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	629
MaeIII	GTNAC	3 cut(s)	50, 316, 495
MalI	GATC	6 cut(s)	81, 270, 324, 438, 540, 571
MboI	GATC	6 cut(s)	79, 268, 322, 436, 538, 569
MboII	GAAGA	3 cut(s)	63, 397, 548
MflI	RGATCY	4 cut(s)	79, 436, 538, 569
MluCI	AATT	2 cut(s)	6, 246
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	2 cut(s)	343, 566
MnlI	CCTC	4 cut(s)	68, 70, 220, 636
MseI	TTAA	1 cut(s)	245
MslI	CAYNNNNRTG	1 cut(s)	405
MspI	CCGG	2 cut(s)	336, 573
MvnI	CGCG	2 cut(s)	198, 586
NdeII	GATC	6 cut(s)	79, 268, 322, 436, 538, 569
NlaIII	CATG	3 cut(s)	122, 404, 568
NlaIV	GGNNCC	2 cut(s)	438, 571
NmuCI	GTSAC	2 cut(s)	50, 495
PceI	AGGCCT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	115, 134
PkrI	GCNGC	2 cut(s)	124, 578
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	598
PspN4I	GGNNCC	2 cut(s)	438, 571
PstNI	CAGNNNCTG	2 cut(s)	128, 266
PsuI	RGATCY	4 cut(s)	79, 436, 538, 569
RsaI	GTAC	2 cut(s)	349, 492
RsaNI	GTAC	2 cut(s)	348, 491
RseI	CAYNNNNRTG	1 cut(s)	405
SaqAI	TTAA	1 cut(s)	245
SatI	GCNGC	2 cut(s)	123, 577
Sau3AI	GATC	6 cut(s)	79, 268, 322, 436, 538, 569
SchI	GAGTC	1 cut(s)	521
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	2 cut(s)	103, 460
SmiMI	CAYNNNNRTG	1 cut(s)	405
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	6, 246
SseBI	AGGCCT	1 cut(s)	300
SsiI	CCGC	3 cut(s)	441, 577, 614
SspMI	CTAG	1 cut(s)	629
StuI	AGGCCT	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	262, 495, 611
TasI	AATT	2 cut(s)	6, 246
TatI	WGTACW	2 cut(s)	347, 490
TauI	GCSGC	1 cut(s)	579
TfiI	GAWTC	2 cut(s)	115, 134
Tru1I	TTAA	1 cut(s)	245
Tru9I	TTAA	1 cut(s)	245
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	2 cut(s)	50, 495
TseI	GCWGC	1 cut(s)	122
Tsp45I	GTSAC	2 cut(s)	50, 495
TspDTI	ATGAA	3 cut(s)	147, 389, 553
TspGWI	ACGGA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	19
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.