Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010917

Physical Location & Seq

Genomic Coordinates Reverse (-)

27224979 .. 27228531

Gene Structure 3553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGACGATTTCCGACGATGAAGACGAGATTTTGGCTCAATTCCTGGAAACAGAGGTCCTCTCCGAGGTCTCCGACCAGGAGGAGGAGGAAGATGTGATAATAAAGGAGCCCAACCCTAAGAGAATGCATATGACTGAGGATAAGGAAGAGAATCACAAAAGCAAAGAAGAAGATAAAGCAAGCTGCTCTTCGTCTTCTTCAACCGCCATTGTCAGTAACAGCATGGTTATGGGAATTGAGACTGGAATTTTCAGCAAAATCCCACCTGAGCTGTTTCGTCACATCCTCAAGTTCCTATCTTCTGAGGATCTCATTGCTTGTTCACTCGTCTGTAGATTCCTGAACCAGGCAGCTTCTGATGAATCCTTGTGGCAACGATTGTATCGTATGCGATGGGGTGTTTTACCCCCTACCAGAAAGCTAAGGGAATGTCCTTGGAAGAAACTTTACATTCAGCGTGATGAAGAGGACATGGTGGATCTTGGTAGAAATTGCCCTGTTGAGTTCAAGGAGTACTATGTCCAAATGCAAGCTGCCAAAAGAAGCCAAGCACCTCTTCCTTCACAGGTGAAGGTGAATGATGATGGGTTAATTCTTGACAAGACAGTAGCTGATCAAGTGTCCATCTGGAAAAGAAGTAAGGGCCTGACTGATAAGGTGGTAACCGATCATACTTGTTCCGGTGAAAAGTGTACTTACTACCAAGTTGGAGATGTGTTTGTCTGTGAGAAAACTGGGCAGGTTCATGTATGTGATGAGTTTTGCAGAGAAGCTGTTATGGATCCATCTAATATGCTTTGGGTCTGTAGAATATCTGGTCATTGCTTTGATAATGTATTGTCACCACAAGAAGCAGAGTCAGATTCAGAACAGCAACAGGAAGATCCAACAGATGAGCCAGAGCCATTCATGGGATCCGGCCGCTTTGCGCGAGCTTATTTGCTGGGATATAACTGTGCGGATGAGAAAGAGCTAGAAGCTACTTGGAGGTTTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like Herpes_UL92

Protein Analysis

333

Amino Acids

38.08

Weight (kDa)

4.66

Isoelectric Point (pI)

56.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	84 - 125	2.5e-09	F-box domain
F-box-like	PF12937	85 - 129	3.2e-14	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45360
fragaria_vesca	FvH4_2g37370 FvH4_2g37370
malus_domestica	MD15G1000900.v1.1
prunus_persica	Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1 Prupe.1G353600_v2.0.a1
pyrus_communis	pycom15g00030
rosa_chinensis	RchiOBHm_Chr6g0304341
rosa_laevigata	RLG00000010988
rosa_multiflora	Rmu_ssc0000218.1_g000040
rosa_roxburghii	Rroxscaffold_7G00163820
rosa_rugosa	Rorug06G0330400 Rorug06G0330500 Rorug06G0330600
rosa_samantha	Rh6AG443600 Rh6BG458800 Rh6CG456400 Rh6DG443100
rosa_wichuraiana	Rw6G038500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	730
AccII	CGCG	1 cut(s)	931
AciI	CCGC	3 cut(s)	204, 922, 959
AclWI	GGATC	7 cut(s)	315, 486, 776, 789, 878, 909, 922
AcoI	YGGCCR	1 cut(s)	919
AcsI	RAATTY	1 cut(s)	246
AfaI	GTAC	2 cut(s)	515, 694
AfiI	CCNNNNNNNGG	4 cut(s)	64, 82, 346, 911
AgsI	TTSAA	2 cut(s)	201, 508
AjnI	CCWGG	3 cut(s)	42, 75, 345
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
Alw26I	GTCTC	2 cut(s)	73, 233
AlwI	GGATC	7 cut(s)	315, 486, 776, 789, 878, 909, 922
AlwNI	CAGNNNCTG	2 cut(s)	356, 611
AoxI	GGCC	2 cut(s)	643, 919
ApeKI	GCWGC	3 cut(s)	183, 350, 533
ApoI	RAATTY	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	931
AspS9I	GGNCC	2 cut(s)	55, 643
AsuHPI	GGTGA	4 cut(s)	580, 586, 695, 834
AvaII	GGWCC	1 cut(s)	55
BaeI	ACNNNNGTAYC	2 cut(s)	365, 398
BamHI	GGATCC	2 cut(s)	781, 914
BanII	GRGCYC	1 cut(s)	111
BarI	GAAGNNNNNNTAC	2 cut(s)	431, 463
BbsI	GAAGAC	2 cut(s)	27, 186
BbvI	GCAGC	3 cut(s)	170, 362, 520
BccI	CCATC	4 cut(s)	387, 578, 632, 793
BciT130I	CCWGG	3 cut(s)	44, 77, 347
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	2 cut(s)	73, 233
BfaI	CTAG	1 cut(s)	974
BfmI	CTRYAG	2 cut(s)	331, 805
BfuAI	ACCTGC	1 cut(s)	730
BisI	GCNGC	4 cut(s)	184, 351, 534, 922
BlsI	GCNGC	4 cut(s)	185, 352, 535, 923
BmcAI	AGTACT	1 cut(s)	515
Bme1390I	CCNGG	3 cut(s)	44, 77, 347
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	55, 643
BmiI	GGNNCC	3 cut(s)	108, 783, 916
BmrFI	CCNGG	3 cut(s)	44, 77, 347
BmrI	ACTGGG	1 cut(s)	744
BmuI	ACTGGG	1 cut(s)	744
BpiI	GAAGAC	2 cut(s)	27, 186
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
Bpu10I	CCTNAGC	2 cut(s)	267, 422
BpuEI	CTTGAG	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	63, 434
BsaWI	WCCGGW	1 cut(s)	680
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 82, 346, 911
Bse1I	ACTGG	2 cut(s)	247, 739
Bse3DI	GCAATG	2 cut(s)	312, 820
BseBI	CCWGG	3 cut(s)	44, 77, 347
BseDI	CCNNGG	2 cut(s)	63, 434
BseGI	GGATG	2 cut(s)	282, 967
BseLI	CCNNNNNNNGG	4 cut(s)	64, 82, 346, 911
BseMI	GCAATG	2 cut(s)	312, 820
BseMII	CTCAG	3 cut(s)	126, 258, 294
BseNI	ACTGG	2 cut(s)	247, 739
BseRI	GAGGAG	2 cut(s)	95, 98
BseX3I	CGGCCG	1 cut(s)	919
BseXI	GCAGC	3 cut(s)	170, 362, 520
BseYI	CCCAGC	1 cut(s)	943
Bsh1236I	CGCG	1 cut(s)	931
Bsh1285I	CGRYCG	1 cut(s)	922
BshFI	GGCC	2 cut(s)	645, 921
BsiEI	CGRYCG	1 cut(s)	922
BsiSI	CCGG	2 cut(s)	681, 918
BslI	CCNNNNNNNGG	4 cut(s)	64, 82, 346, 911
BsmAI	GTCTC	2 cut(s)	73, 233
BsmI	GAATGC	1 cut(s)	129
BsnI	GGCC	2 cut(s)	645, 921
Bso31I	GGTCTC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	7 cut(s)	307, 478, 613, 667, 781, 883, 914
BspACI	CCGC	3 cut(s)	204, 922, 959
BspANI	GGCC	2 cut(s)	645, 921
BspCNI	CTCAG	3 cut(s)	127, 259, 295
BspFNI	CGCG	1 cut(s)	931
BspLI	GGNNCC	3 cut(s)	108, 783, 916
BspMI	ACCTGC	1 cut(s)	730
BspPI	GGATC	7 cut(s)	315, 486, 776, 789, 878, 909, 922
BspQI	GCTCTTC	1 cut(s)	193
BspTNI	GGTCTC	1 cut(s)	73
BsrDI	GCAATG	2 cut(s)	312, 820
BsrI	ACTGG	2 cut(s)	247, 739
BssECI	CCNNGG	2 cut(s)	63, 434
BssMI	GATC	7 cut(s)	307, 478, 613, 667, 781, 883, 914
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	3 cut(s)	44, 77, 347
Bst4CI	ACNGT	2 cut(s)	607, 956
Bst6I	CTCTTC	4 cut(s)	141, 193, 459, 561
BstC8I	GCNNGC	3 cut(s)	181, 531, 933
BstDEI	CTNAG	5 cut(s)	117, 135, 267, 303, 422
BstEII	GGTNACC	1 cut(s)	661
BstENI	CCTNNNNNAGG	2 cut(s)	62, 344
BstF5I	GGATG	2 cut(s)	282, 967
BstFNI	CGCG	1 cut(s)	931
BstHHI	GCGC	1 cut(s)	931
BstKTI	GATC	7 cut(s)	310, 481, 616, 670, 784, 886, 917
BstMAI	GTCTC	2 cut(s)	73, 233
BstMBI	GATC	7 cut(s)	307, 478, 613, 667, 781, 883, 914
BstMCI	CGRYCG	1 cut(s)	922
BstNI	CCWGG	3 cut(s)	44, 77, 347
BstPI	GGTNACC	1 cut(s)	661
BstSCI	CCNGG	3 cut(s)	42, 75, 345
BstSFI	CTRYAG	2 cut(s)	331, 805
BstUI	CGCG	1 cut(s)	931
BstV1I	GCAGC	3 cut(s)	170, 362, 520
BstV2I	GAAGAC	2 cut(s)	27, 186
BstX2I	RGATCY	5 cut(s)	307, 478, 781, 883, 914
BstYI	RGATCY	5 cut(s)	307, 478, 781, 883, 914
BstZI	CGGCCG	1 cut(s)	919
BsuRI	GGCC	2 cut(s)	645, 921
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	282, 967
BveI	ACCTGC	1 cut(s)	730
Cac8I	GCNNGC	3 cut(s)	181, 531, 933
CaiI	CAGNNNCTG	2 cut(s)	356, 611
CfoI	GCGC	1 cut(s)	931
Cfr13I	GGNCC	2 cut(s)	55, 643
Csp6I	GTAC	2 cut(s)	514, 693
CviAII	CATG	4 cut(s)	223, 472, 746, 910
CviQI	GTAC	2 cut(s)	514, 693
DdeI	CTNAG	5 cut(s)	117, 135, 267, 303, 422
DpnI	GATC	7 cut(s)	309, 480, 615, 669, 783, 885, 916
DpnII	GATC	7 cut(s)	307, 478, 613, 667, 781, 883, 914
EaeI	YGGCCR	1 cut(s)	919
EagI	CGGCCG	1 cut(s)	919
Eam1104I	CTCTTC	4 cut(s)	141, 193, 459, 561
EarI	CTCTTC	4 cut(s)	141, 193, 459, 561
EclXI	CGGCCG	1 cut(s)	919
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	919
Eco91I	GGTNACC	1 cut(s)	661
EcoNI	CCTNNNNNAGG	2 cut(s)	62, 344
EcoO109I	RGGNCCY	2 cut(s)	55, 643
EcoO65I	GGTNACC	1 cut(s)	661
EcoRII	CCWGG	3 cut(s)	42, 75, 345
EcoT14I	CCWWGG	1 cut(s)	434
EcoT22I	ATGCAT	1 cut(s)	129
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	4 cut(s)	226, 475, 749, 913
FalI	AAGNNNNNCTT	4 cut(s)	172, 204, 540, 572
FatI	CATG	4 cut(s)	222, 471, 745, 909
FauNDI	CATATG	1 cut(s)	129
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	4 cut(s)	184, 351, 534, 922
FokI	GGATG	2 cut(s)	269, 974
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	4 cut(s)	184, 351, 534, 922
FspBI	CTAG	1 cut(s)	974
GlaI	GCGC	1 cut(s)	930
GluI	GCNGC	4 cut(s)	184, 351, 534, 922
GsaI	CCCAGC	1 cut(s)	947
HaeIII	GGCC	2 cut(s)	645, 921
HapII	CCGG	2 cut(s)	681, 918
HhaI	GCGC	1 cut(s)	931
Hin1II	CATG	4 cut(s)	226, 475, 749, 913
Hin6I	GCGC	1 cut(s)	929
HinP1I	GCGC	1 cut(s)	929
HinfI	GANTC	5 cut(s)	151, 336, 362, 857, 863
HpaII	CCGG	2 cut(s)	681, 918
HphI	GGTGA	4 cut(s)	580, 586, 695, 834
Hpy166II	GTNNAC	2 cut(s)	323, 693
Hpy188I	TCNGA	7 cut(s)	13, 64, 73, 304, 358, 862, 868
Hpy188III	TCNNGA	3 cut(s)	340, 596, 628
Hpy8I	GTNNAC	2 cut(s)	323, 693
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	2 cut(s)	565, 570
HpyCH4III	ACNGT	2 cut(s)	607, 956
HpyCH4V	TGCA	3 cut(s)	127, 529, 765
HpyF3I	CTNAG	5 cut(s)	117, 135, 267, 303, 422
Hsp92II	CATG	4 cut(s)	226, 475, 749, 913
HspAI	GCGC	1 cut(s)	929
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	7 cut(s)	307, 478, 613, 667, 781, 883, 914
LguI	GCTCTTC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	106
Lsp1109I	GCAGC	3 cut(s)	170, 362, 520
MaeI	CTAG	1 cut(s)	974
MaeIII	GTNAC	4 cut(s)	215, 278, 661, 840
MalI	GATC	7 cut(s)	309, 480, 615, 669, 783, 885, 916
MboI	GATC	7 cut(s)	307, 478, 613, 667, 781, 883, 914
MflI	RGATCY	5 cut(s)	307, 478, 781, 883, 914
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	5 cut(s)	38, 234, 246, 490, 591
MlyI	GAGTC	1 cut(s)	866
MmeI	TCCRAC	4 cut(s)	36, 96, 688, 911
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	1 cut(s)	590
MslI	CAYNNNNRTG	2 cut(s)	227, 750
MspI	CCGG	2 cut(s)	681, 918
MspR9I	CCNGG	3 cut(s)	44, 77, 347
Mva1269I	GAATGC	1 cut(s)	129
MvaI	CCWGG	3 cut(s)	44, 77, 347
MvnI	CGCG	1 cut(s)	931
NdeI	CATATG	1 cut(s)	129
NdeII	GATC	7 cut(s)	307, 478, 613, 667, 781, 883, 914
NlaIII	CATG	4 cut(s)	226, 475, 749, 913
NlaIV	GGNNCC	3 cut(s)	108, 783, 916
NmuCI	GTSAC	2 cut(s)	278, 840
NsiI	ATGCAT	1 cut(s)	129
PciSI	GCTCTTC	1 cut(s)	193
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 382
PctI	GAATGC	1 cut(s)	129
PfeI	GAWTC	4 cut(s)	151, 336, 362, 863
PfoI	TCCNGGA	1 cut(s)	42
PkrI	GCNGC	4 cut(s)	185, 352, 535, 923
PleI	GAGTC	1 cut(s)	865
PpsI	GAGTC	1 cut(s)	865
PpuMI	RGGWCCY	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	3 cut(s)	42, 75, 345
PspEI	GGTNACC	1 cut(s)	661
PspFI	CCCAGC	1 cut(s)	943
PspGI	CCWGG	3 cut(s)	42, 75, 345
PspN4I	GGNNCC	3 cut(s)	108, 783, 916
PspPI	GGNCC	2 cut(s)	55, 643
PspPPI	RGGWCCY	1 cut(s)	55
PstNI	CAGNNNCTG	2 cut(s)	356, 611
PsuI	RGATCY	5 cut(s)	307, 478, 781, 883, 914
RsaI	GTAC	2 cut(s)	515, 694
RsaNI	GTAC	2 cut(s)	514, 693
RseI	CAYNNNNRTG	2 cut(s)	227, 750
SapI	GCTCTTC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	590
SatI	GCNGC	4 cut(s)	184, 351, 534, 922
Sau3AI	GATC	7 cut(s)	307, 478, 613, 667, 781, 883, 914
Sau96I	GGNCC	2 cut(s)	55, 643
ScaI	AGTACT	1 cut(s)	515
SchI	GAGTC	1 cut(s)	866
ScrFI	CCNGG	3 cut(s)	44, 77, 347
SduI	GDGCHC	1 cut(s)	111
SfcI	CTRYAG	2 cut(s)	331, 805
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	227, 750
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	5 cut(s)	38, 234, 246, 490, 591
SsiI	CCGC	3 cut(s)	204, 922, 959
SspMI	CTAG	1 cut(s)	974
StyD4I	CCNGG	3 cut(s)	42, 75, 345
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	2 cut(s)	607, 956
TasI	AATT	5 cut(s)	38, 234, 246, 490, 591
TatI	WGTACW	2 cut(s)	513, 692
TauI	GCSGC	1 cut(s)	924
TfiI	GAWTC	4 cut(s)	151, 336, 362, 863
Tru1I	TTAA	1 cut(s)	590
Tru9I	TTAA	1 cut(s)	590
TseFI	GTSAC	2 cut(s)	278, 840
TseI	GCWGC	3 cut(s)	183, 350, 533
Tsp45I	GTSAC	2 cut(s)	278, 840
TspDTI	ATGAA	5 cut(s)	33, 375, 477, 734, 898
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	2 cut(s)	62, 344
XapI	RAATTY	1 cut(s)	246
XspI	CTAG	1 cut(s)	974
ZrmI	AGTACT	1 cut(s)	515
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.