AT5G45580
MYB Family

Myb family transcription factor APL-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010064
Physical Location & Seq
Reverse (-)
18480809 .. 18483044
2236 bp
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UTR
Exon/CDS
Intron
AT5G45580.3

Sequence Viewer

Length: 795 bp
ATGATGACTAGAGATCCCAAACCTAGGCTCAGATGGACAGCCGATCTTCATGATCGCTTCGTCGACGCCGTCGCTAAGCTCGGTGGCGCTGACAAAGCAACTCCTAAATCGGTTCTGAAGCTGATGGGATTAAAAGGTTTAACACTGTACCATCTCAAGAGCCATTTACAGAAGTATAGACTTGGTCAACAACAAGGCAAAAAACAAAATAGAACAGAACAAAACAAAGAAAATGCTGGAAGTTCATATGTGCATTTCGACAATTGTTCTCAAGGAGGAATCTCCAATGATTCAAGATTTGATAACCATCAAAGACAAAGCGGGAATGTACCTTTTGCTGAGGCAATGAGACATCAGGTCGATGCGCAACAACGGTTTCAAGAACAACTCGAGGTGCAGAAAAAACTGCAGATGAGAATGGAGGCACAAGGAAAATATTTGTTGACATTACTAGAGAAAGCACAGAAGAGCTTACCTTGTGGTAATGCAGGGGAAACAGACAAGGGTCAATTCTCGGATTTCAATCTCGCACTTTCGGGACTTGTAGGAAGTGATCGTAAGAACGAGAAGGCGGGTTTGGTTACTGATATCTCACACCTTAATGGTGGTGATTCCTCTCAAGAGTTTCGGTTATGTGGAGAACAAGAGAAAATAGAAACCGGAGATGCATGTGTTAAACCAGAATCCGGGTTTGTGCATTTTGATTTGAACTCCAAAAGTGGGTATGATCTCTTGAATTGTGGGAAATATGGGATTGAAGTGAAGCCAAATGTGATTGGAGATAGACTTCAATAG

Protein Analysis

264

Amino Acids

29.47

Weight (kDa)

8.84

Isoelectric Point (pI)

29.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 72 - 117 3.3e-20 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 366
AccI GTMKAC 1 cut(s) 63
AciI CCGC 2 cut(s) 321, 572
AclWI GGATC 1 cut(s) 8
AcuI CTGAAG 1 cut(s) 137
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 2 cut(s) 149, 330
AfiI CCNNNNNNNGG 3 cut(s) 24, 686, 720
AgsI TTSAA 7 cut(s) 294, 380, 523, 709, 736, 758, 791
AhdI GACNNNNNGTC 1 cut(s) 356
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AluBI AGCT 3 cut(s) 79, 121, 471
AluI AGCT 3 cut(s) 79, 121, 471
Alw26I GTCTC 1 cut(s) 343
AlwI GGATC 1 cut(s) 8
Ama87I CYCGRG 1 cut(s) 389
AspA2I CCTAGG 1 cut(s) 23
AspLEI GCGC 2 cut(s) 89, 367
AsuC2I CCSGG 1 cut(s) 688
AsuHPI GGTGA 1 cut(s) 620
AvaI CYCGRG 1 cut(s) 389
AvrII CCTAGG 1 cut(s) 23
BbvCI CCTCAGC 1 cut(s) 339
BccI CCATC 4 cut(s) 27, 118, 159, 315
BceAI ACGGC 1 cut(s) 53
BcnI CCSGG 1 cut(s) 688
BcoDI GTCTC 1 cut(s) 343
BfaI CTAG 3 cut(s) 9, 24, 452
BfmI CTRYAG 1 cut(s) 407
BfoI RGCGCY 1 cut(s) 90
BlnI CCTAGG 1 cut(s) 23
BlpI GCTNAGC 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 688
BmeRI GACNNNNNGTC 1 cut(s) 356
BmeT110I CYCGRG 1 cut(s) 389
BmrFI CCNGG 1 cut(s) 688
BmsI GCATC 2 cut(s) 352, 655
BoxI GACNNNNGTC 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 339
Bpu1102I GCTNAGC 1 cut(s) 75
BpuEI CTTGAG 3 cut(s) 140, 255, 603
BpuMI CCSGG 1 cut(s) 688
BsaBI GATNNNNATC 2 cut(s) 306, 522
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 686, 720
Bse3DI GCAATG 1 cut(s) 351
Bse8I GATNNNNATC 2 cut(s) 306, 522
BseDI CCNNGG 1 cut(s) 23
BseJI GATNNNNATC 2 cut(s) 306, 522
BseLI CCNNNNNNNGG 3 cut(s) 24, 686, 720
BseMI GCAATG 1 cut(s) 351
BseMII CTCAG 2 cut(s) 43, 330
BsgI GTGCAG 1 cut(s) 416
BsiHKCI CYCGRG 1 cut(s) 389
BsiSI CCGG 2 cut(s) 660, 687
BslFI GGGAC 1 cut(s) 552
BslI CCNNNNNNNGG 3 cut(s) 24, 686, 720
BsmAI GTCTC 1 cut(s) 343
BsmFI GGGAC 1 cut(s) 552
BsoBI CYCGRG 1 cut(s) 389
Bsp143I GATC 5 cut(s) 13, 43, 52, 553, 727
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 2 cut(s) 321, 572
BspCNI CTCAG 2 cut(s) 42, 331
BspHI TCATGA 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 411
BspPI GGATC 1 cut(s) 8
BspQI GCTCTTC 1 cut(s) 461
BsrDI GCAATG 1 cut(s) 351
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 5 cut(s) 13, 43, 52, 553, 727
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 23
Bst4CI ACNGT 2 cut(s) 147, 375
Bst6I CTCTTC 1 cut(s) 461
BstACI GRCGYC 1 cut(s) 66
BstDEI CTNAG 3 cut(s) 29, 75, 339
BstH2I RGCGCY 1 cut(s) 90
BstHHI GCGC 2 cut(s) 89, 367
BstKTI GATC 5 cut(s) 16, 46, 55, 556, 730
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 5 cut(s) 13, 43, 52, 553, 727
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 672
BstPAI GACNNNNGTC 1 cut(s) 504
BstSCI CCNGG 1 cut(s) 686
BstSFI CTRYAG 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 13
BstYI RGATCY 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 143
CciI TCATGA 1 cut(s) 49
CfoI GCGC 2 cut(s) 89, 367
CseI GACGC 1 cut(s) 74
Csp6I GTAC 2 cut(s) 148, 329
CviAII CATG 2 cut(s) 50, 669
CviJI RGCY 7 cut(s) 28, 41, 79, 121, 162, 471, 766
CviKI_1 RGCY 7 cut(s) 28, 41, 79, 121, 162, 471, 766
CviQI GTAC 2 cut(s) 148, 329
DdeI CTNAG 3 cut(s) 29, 75, 339
DpnI GATC 5 cut(s) 15, 45, 54, 555, 729
DpnII GATC 5 cut(s) 13, 43, 52, 553, 727
DriI GACNNNNNGTC 1 cut(s) 356
Eam1104I CTCTTC 1 cut(s) 461
Eam1105I GACNNNNNGTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 23
Eco32I GATATC 1 cut(s) 589
Eco57I CTGAAG 1 cut(s) 137
Eco88I CYCGRG 1 cut(s) 389
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 670
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 2 cut(s) 53, 672
FaiI YATR 8 cut(s) 51, 177, 247, 249, 634, 670, 726, 750
FaqI GGGAC 1 cut(s) 552
FatI CATG 2 cut(s) 49, 668
FauI CCCGC 2 cut(s) 314, 565
FauNDI CATATG 1 cut(s) 247
FblI GTMKAC 1 cut(s) 63
FspBI CTAG 3 cut(s) 9, 24, 452
FspI TGCGCA 1 cut(s) 366
GlaI GCGC 2 cut(s) 88, 366
HaeII RGCGCY 1 cut(s) 90
HapII CCGG 2 cut(s) 660, 687
HgaI GACGC 1 cut(s) 74
HhaI GCGC 2 cut(s) 89, 367
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 2 cut(s) 53, 672
Hin6I GCGC 2 cut(s) 87, 365
HinP1I GCGC 2 cut(s) 87, 365
HincII GTYRAC 3 cut(s) 64, 188, 444
HindII GTYRAC 3 cut(s) 64, 188, 444
HinfI GANTC 4 cut(s) 279, 290, 611, 683
HpaII CCGG 2 cut(s) 660, 687
HphI GGTGA 1 cut(s) 620
Hpy166II GTNNAC 3 cut(s) 64, 188, 444
Hpy188I TCNGA 3 cut(s) 32, 117, 517
Hpy188III TCNNGA 7 cut(s) 50, 157, 294, 380, 537, 620, 733
Hpy8I GTNNAC 3 cut(s) 64, 188, 444
Hpy99I CGWCG 3 cut(s) 65, 68, 74
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 2 cut(s) 147, 375
HpyCH4V TGCA 6 cut(s) 253, 397, 409, 488, 668, 697
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 3 cut(s) 29, 75, 339
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 2 cut(s) 53, 672
HspAI GCGC 2 cut(s) 87, 365
Kzo9I GATC 5 cut(s) 13, 43, 52, 553, 727
LguI GCTCTTC 1 cut(s) 461
LpnPI CCDG 6 cut(s) 222, 341, 474, 673, 693, 700
LweI GCATC 2 cut(s) 352, 655
MaeI CTAG 3 cut(s) 9, 24, 452
MaeIII GTNAC 1 cut(s) 580
MalI GATC 5 cut(s) 15, 45, 54, 555, 729
MboI GATC 5 cut(s) 13, 43, 52, 553, 727
MboII GAAGA 2 cut(s) 38, 478
MfeI CAATTG 1 cut(s) 262
MflI RGATCY 1 cut(s) 13
MluCI AATT 3 cut(s) 262, 509, 736
MnlI CCTC 5 cut(s) 269, 334, 385, 415, 625
Mph1103I ATGCAT 1 cut(s) 670
MseI TTAA 4 cut(s) 131, 140, 600, 675
MslI CAYNNNNRTG 1 cut(s) 600
MspI CCGG 2 cut(s) 660, 687
MspR9I CCNGG 1 cut(s) 688
MunI CAATTG 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 95
NciI CCSGG 1 cut(s) 688
NdeI CATATG 1 cut(s) 247
NdeII GATC 5 cut(s) 13, 43, 52, 553, 727
NlaIII CATG 2 cut(s) 53, 672
NsbI TGCGCA 1 cut(s) 366
NsiI ATGCAT 1 cut(s) 670
NspI RCATGY 1 cut(s) 672
PaeR7I CTCGAG 1 cut(s) 389
PagI TCATGA 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 461
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 4 cut(s) 279, 290, 611, 683
PflFI GACNNNGTC 2 cut(s) 68, 183
PshAI GACNNNNGTC 1 cut(s) 504
PspXI VCTCGAGB 1 cut(s) 389
PstI CTGCAG 1 cut(s) 411
PsuI RGATCY 1 cut(s) 13
PsyI GACNNNGTC 2 cut(s) 68, 183
RsaI GTAC 2 cut(s) 149, 330
RsaNI GTAC 2 cut(s) 148, 329
RseI CAYNNNNRTG 1 cut(s) 600
SalI GTCGAC 1 cut(s) 62
SapI GCTCTTC 1 cut(s) 461
SaqAI TTAA 4 cut(s) 131, 140, 600, 675
Sau3AI GATC 5 cut(s) 13, 43, 52, 553, 727
ScrFI CCNGG 1 cut(s) 688
SfaNI GCATC 2 cut(s) 352, 655
SfcI CTRYAG 1 cut(s) 407
Sfr274I CTCGAG 1 cut(s) 389
SgrDI CGTCGACG 1 cut(s) 62
SlaI CTCGAG 1 cut(s) 389
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 4 cut(s) 155, 270, 389, 618
SmoI CTYRAG 4 cut(s) 155, 270, 389, 618
Sse9I AATT 3 cut(s) 262, 509, 736
SsiI CCGC 2 cut(s) 321, 572
SspI AATATT 1 cut(s) 437
SspMI CTAG 3 cut(s) 9, 24, 452
StyD4I CCNGG 1 cut(s) 686
StyI CCWWGG 1 cut(s) 23
TaaI ACNGT 2 cut(s) 147, 375
TaqI TCGA 4 cut(s) 63, 258, 360, 390
TasI AATT 3 cut(s) 262, 509, 736
TfiI GAWTC 4 cut(s) 279, 290, 611, 683
Tru1I TTAA 4 cut(s) 131, 140, 600, 675
Tru9I TTAA 4 cut(s) 131, 140, 600, 675
TscAI CASTG 1 cut(s) 150
TspDTI ATGAA 2 cut(s) 38, 234
TspRI CASTG 1 cut(s) 150
Tth111I GACNNNGTC 2 cut(s) 68, 183
XceI RCATGY 1 cut(s) 672
XhoI CTCGAG 1 cut(s) 389
XmaJI CCTAGG 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 3 cut(s) 9, 24, 452
Zsp2I ATGCAT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.