Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010064

Physical Location & Seq

Genomic Coordinates Forward (+)

28096875 .. 28099384

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG269700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGAGATGAACTACAACTACGGCAGCGGCGGCCAAGAGATCAGCTGTCCGTACGAGAATGGGGTGATGATGACCAGAGACCCCAAGCCCCGGCTGAGGTGGACGCCGGATCTTCACGACAGATTTGTCGACGCCGTCACTAAGCTCGGTGGCCCTGACAAGGCCACTCCTAAGTCTGTCTTGAGGCTAATGGGCTTGAAGGGATTGACATTGTACCATTTGAAAAGCCATTTGCAGAAGTATAGACTCGGACAGCAATCTCGGAAACAAAATTCTGCAGAACAAGGCAGAGAGAACAATGGGGATTCATTTGTACATTTCAGTAATCATCATTCCACAGGGTCTACCACCAAATCCTCAAGAGGTAATGCAGAACAAGGAACAATTCCGCTTTCGGAGGAACTTAAGTGTCAGATTGAAGTACAGAACAGATTGCAAGAGCAACTCGAGGTTCAAAAGAAGCTGCAAATGAGAATAGAAGCCCAAGGGAAGTACTTACAAACTATATTAGAGAAAGCTCAAAAGGGCCTCTCTATTGACATGAAGGGGCCGATTACTGCAGAAGCCACAAGAGCGCAATTGACAGACTTCAATTTGGCTCTATCAAACTTCATGGAGAATATGAGCGAAGAAGAGAGAAGAGTAAACATAATAGAGATGAATGAGGCTTATAAGAAGAGCAATGGTTCAACTTTCCAGATTTATGAAGAGGGGAATATTGGAGAAGAAAATAAAGATTCAAAGCTAAAGGTTGAGAGGGGTTCCATACATTTTGACTTAAATACTAAAGGTAGTTATGATTATGTTGGTACAAATGGAACTGAATTGGAACCACGATGCTTTCGTTTACAAGATAGTTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

288

Amino Acids

32.69

Weight (kDa)

7.06

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	31 - 82	7.4e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	130 - 175	2.9e-21	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45580 AT5G45580 AT5G45580
fragaria_vesca	FvH4_5g23660
malus_domestica	MD00G1000500.v1.1 MD06G1022600.v1.1
prunus_persica	Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1
pyrus_communis	pycom16g25380
rosa_chinensis	RchiOBHm_Chr7g0212961
rosa_laevigata	RLG00000002842
rosa_multiflora	Rmu_sc0001684.1_g000008 Rmu_sc0037369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246380
rosa_rugosa	Rorug07G0138400
rosa_samantha	Rh7AG269700 Rh7BG265100 Rh7CG288900 Rh7DG277800
rosa_wichuraiana	Rw7G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
AasI	GACNNNNNNGTC	1 cut(s)	125
AccI	GTMKAC	2 cut(s)	129, 344
AciI	CCGC	3 cut(s)	27, 30, 389
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	271
AcyI	GRCGYC	2 cut(s)	104, 132
AfaI	GTAC	6 cut(s)	53, 215, 315, 423, 494, 811
AfiI	CCNNNNNNNGG	3 cut(s)	90, 96, 160
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	7 cut(s)	199, 223, 419, 455, 592, 690, 741
AluBI	AGCT	5 cut(s)	45, 145, 463, 518, 745
AluI	AGCT	5 cut(s)	45, 145, 463, 518, 745
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	5 cut(s)	31, 151, 162, 526, 548
ApeKI	GCWGC	2 cut(s)	24, 463
ApoI	RAATTY	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	3 cut(s)	152, 526, 548
AsuC2I	CCSGG	1 cut(s)	91
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	446
BbvCI	CCTCAGC	1 cut(s)	95
BbvI	GCAGC	2 cut(s)	36, 450
BceAI	ACGGC	2 cut(s)	37, 119
BcnI	CCSGG	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	276, 558
BfrI	CTTAAG	1 cut(s)	404
BisI	GCNGC	4 cut(s)	25, 28, 31, 464
BlsI	GCNGC	4 cut(s)	26, 29, 32, 465
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	1 cut(s)	91
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	3 cut(s)	152, 526, 548
BmiI	GGNNCC	3 cut(s)	549, 763, 831
BmrFI	CCNGG	1 cut(s)	91
BmsI	GCATC	1 cut(s)	827
Bpu10I	CCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	2 cut(s)	202, 343
BpuMI	CCSGG	1 cut(s)	91
BsaHI	GRCGYC	2 cut(s)	104, 132
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	89, 484
Bsc4I	CCNNNNNNNGG	3 cut(s)	90, 96, 160
Bse3DI	GCAATG	1 cut(s)	688
BseDI	CCNNGG	2 cut(s)	89, 484
BseLI	CCNNNNNNNGG	3 cut(s)	90, 96, 160
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	36, 450
BshFI	GGCC	5 cut(s)	33, 153, 164, 528, 550
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	2 cut(s)	91, 107
BsiWI	CGTACG	1 cut(s)	51
BslI	CCNNNNNNNGG	3 cut(s)	90, 96, 160
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	5 cut(s)	33, 153, 164, 528, 550
Bso31I	GGTCTC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	446
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	39, 109
BspACI	CCGC	3 cut(s)	27, 30, 389
BspANI	GGCC	5 cut(s)	33, 153, 164, 528, 550
BspCNI	CTCAG	1 cut(s)	87
BspLI	GGNNCC	3 cut(s)	549, 763, 831
BspMAI	CTGCAG	2 cut(s)	280, 562
BspPI	GGATC	1 cut(s)	117
BspQI	GCTCTTC	1 cut(s)	671
BspTI	CTTAAG	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	688
BsrGI	TGTACA	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	89, 484
BssMI	GATC	2 cut(s)	39, 109
BssNI	GRCGYC	2 cut(s)	104, 132
BssT1I	CCWWGG	1 cut(s)	484
Bst6I	CTCTTC	4 cut(s)	627, 634, 671, 702
BstACI	GRCGYC	2 cut(s)	104, 132
BstAFI	CTTAAG	1 cut(s)	404
BstAUI	TGTACA	1 cut(s)	313
BstDEI	CTNAG	3 cut(s)	95, 141, 171
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	2 cut(s)	42, 112
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	39, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 572
BstSCI	CCNGG	1 cut(s)	89
BstSFI	CTRYAG	2 cut(s)	276, 558
BstV1I	GCAGC	2 cut(s)	36, 450
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	5 cut(s)	33, 153, 164, 528, 550
CfoI	GCGC	1 cut(s)	577
Cfr13I	GGNCC	3 cut(s)	152, 526, 548
CseI	GACGC	2 cut(s)	112, 140
Csp6I	GTAC	6 cut(s)	52, 214, 314, 422, 493, 810
CviAII	CATG	2 cut(s)	541, 613
CviQI	GTAC	6 cut(s)	52, 214, 314, 422, 493, 810
DdeI	CTNAG	3 cut(s)	95, 141, 171
DpnI	GATC	2 cut(s)	41, 111
DpnII	GATC	2 cut(s)	39, 109
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	4 cut(s)	627, 634, 671, 702
EarI	CTCTTC	4 cut(s)	627, 634, 671, 702
Eco130I	CCWWGG	1 cut(s)	484
Eco31I	GGTCTC	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	2 cut(s)	544, 616
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	2 cut(s)	540, 612
FblI	GTMKAC	2 cut(s)	129, 344
Fnu4HI	GCNGC	4 cut(s)	25, 28, 31, 464
Fsp4HI	GCNGC	4 cut(s)	25, 28, 31, 464
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	4 cut(s)	25, 28, 31, 464
HaeIII	GGCC	5 cut(s)	33, 153, 164, 528, 550
HapII	CCGG	2 cut(s)	91, 107
HgaI	GACGC	2 cut(s)	112, 140
HhaI	GCGC	1 cut(s)	577
Hin1I	GRCGYC	2 cut(s)	104, 132
Hin1II	CATG	2 cut(s)	544, 616
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	3 cut(s)	246, 305, 737
HpaII	CCGG	2 cut(s)	91, 107
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	6 cut(s)	102, 130, 345, 646, 848, 860
Hpy188I	TCNGA	4 cut(s)	251, 264, 397, 414
Hpy188III	TCNNGA	4 cut(s)	116, 181, 360, 697
Hpy8I	GTNNAC	6 cut(s)	102, 130, 345, 646, 848, 860
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	193, 538
HpyCH4V	TGCA	6 cut(s)	235, 278, 371, 436, 466, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 572
HpyF3I	CTNAG	3 cut(s)	95, 141, 171
Hsp92I	GRCGYC	2 cut(s)	104, 132
Hsp92II	CATG	2 cut(s)	544, 616
HspAI	GCGC	1 cut(s)	575
Kzo9I	GATC	2 cut(s)	39, 109
LguI	GCTCTTC	1 cut(s)	671
LpnPI	CCDG	6 cut(s)	88, 104, 120, 168, 324, 710
Lsp1109I	GCAGC	2 cut(s)	36, 450
LweI	GCATC	1 cut(s)	827
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	41, 111
MboI	GATC	2 cut(s)	39, 109
MboII	GAAGA	7 cut(s)	104, 641, 644, 651, 688, 719, 737
MfeI	CAATTG	1 cut(s)	578
MflI	RGATCY	1 cut(s)	109
MluCI	AATT	5 cut(s)	271, 384, 578, 592, 824
MlyI	GAGTC	1 cut(s)	240
MseI	TTAA	2 cut(s)	405, 779
MspA1I	CMGCKG	2 cut(s)	27, 45
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	2 cut(s)	91, 107
MspR9I	CCNGG	1 cut(s)	91
MunI	CAATTG	1 cut(s)	578
MwoI	GCNNNNNNNGC	2 cut(s)	30, 572
NciI	CCSGG	1 cut(s)	91
NdeII	GATC	2 cut(s)	39, 109
NlaIII	CATG	2 cut(s)	544, 616
NlaIV	GGNNCC	3 cut(s)	549, 763, 831
NmuCI	GTSAC	1 cut(s)	136
PaeR7I	CTCGAG	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	671
PcsI	WCGNNNNNNNCGW	1 cut(s)	841
PfeI	GAWTC	2 cut(s)	305, 737
Pfl23II	CGTACG	1 cut(s)	51
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	4 cut(s)	26, 29, 32, 465
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	672
PspLI	CGTACG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	549, 763, 831
PspPI	GGNCC	3 cut(s)	152, 526, 548
PspXI	VCTCGAGB	1 cut(s)	446
PsrI	GAACNNNNNNTAC	1 cut(s)	34
PstI	CTGCAG	2 cut(s)	280, 562
PsuI	RGATCY	1 cut(s)	109
PsyI	GACNNNGTC	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	6 cut(s)	53, 215, 315, 423, 494, 811
RsaNI	GTAC	6 cut(s)	52, 214, 314, 422, 493, 810
SalI	GTCGAC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	671
SaqAI	TTAA	2 cut(s)	405, 779
SatI	GCNGC	4 cut(s)	25, 28, 31, 464
Sau3AI	GATC	2 cut(s)	39, 109
Sau96I	GGNCC	3 cut(s)	152, 526, 548
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	827
SfcI	CTRYAG	2 cut(s)	276, 558
Sfr274I	CTCGAG	1 cut(s)	446
SlaI	CTCGAG	1 cut(s)	446
SmlI	CTYRAG	4 cut(s)	181, 358, 404, 446
SmoI	CTYRAG	4 cut(s)	181, 358, 404, 446
Sse9I	AATT	5 cut(s)	271, 384, 578, 592, 824
SsiI	CCGC	3 cut(s)	27, 30, 389
SspI	AATATT	1 cut(s)	718
StyD4I	CCNGG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	484
TaqI	TCGA	2 cut(s)	129, 447
TasI	AATT	5 cut(s)	271, 384, 578, 592, 824
TatI	WGTACW	3 cut(s)	313, 421, 492
TauI	GCSGC	2 cut(s)	30, 33
TfiI	GAWTC	2 cut(s)	305, 737
Tru1I	TTAA	2 cut(s)	405, 779
Tru9I	TTAA	2 cut(s)	405, 779
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	2 cut(s)	24, 463
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	6 cut(s)	23, 297, 557, 601, 674, 720
TspGWI	ACGGA	1 cut(s)	39
Tth111I	GACNNNGTC	1 cut(s)	134
Vha464I	CTTAAG	1 cut(s)	404
XapI	RAATTY	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	446
XmiI	GTMKAC	2 cut(s)	129, 344
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.