Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0010064

Physical Location & Seq

Genomic Coordinates Reverse (-)

2843267 .. 2849426

Gene Structure 6160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1022600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGGATTGAATGGATTAACTTTGTACCATCTGAAAAGCGATTTGCAGTATAGACTTGGACAGCATGCTCGGAAACACAACTCCGTCGAAGAACAAAGCCGAGAGAATAACGGGGATTCATATGTACATTTCAGTAATCTTCATTCCACAAGTTCTGGCATCAAATCATCAGGAGGTGGGAAAACTGAACAAGGGTACGTGAAACCAGCACTTCTTGGTTCCGCTTTGATTACAGCTTGGTATACCAGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

85

Amino Acids

9.17

Weight (kDa)

9.05

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45580 AT5G45580 AT5G45580
fragaria_vesca	FvH4_5g23660
malus_domestica	MD00G1000500.v1.1 MD06G1022600.v1.1
prunus_persica	Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1
pyrus_communis	pycom16g25380
rosa_chinensis	RchiOBHm_Chr7g0212961
rosa_laevigata	RLG00000002842
rosa_multiflora	Rmu_sc0001684.1_g000008 Rmu_sc0037369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246380
rosa_rugosa	Rorug07G0138400
rosa_samantha	Rh7AG269700 Rh7BG265100 Rh7CG288900 Rh7DG277800
rosa_wichuraiana	Rw7G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	242
AciI	CCGC	1 cut(s)	222
AfaI	GTAC	3 cut(s)	26, 126, 197
AgsI	TTSAA	1 cut(s)	10
AluBI	AGCT	1 cut(s)	236
AluI	AGCT	1 cut(s)	236
BccI	CCATC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	246
BseNI	ACTGG	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	124
BspACI	CCGC	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	220
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	246
BssNAI	GTATAC	1 cut(s)	243
Bst1107I	GTATAC	1 cut(s)	243
BstAUI	TGTACA	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	68
BstZ17I	GTATAC	1 cut(s)	243
Cac8I	GCNNGC	1 cut(s)	66
Csp6I	GTAC	3 cut(s)	25, 125, 196
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	2 cut(s)	99, 236
CviKI_1	RGCY	2 cut(s)	99, 236
CviQI	GTAC	3 cut(s)	25, 125, 196
FaeI	CATG	1 cut(s)	68
FaiI	YATR	5 cut(s)	51, 66, 121, 123, 243
FatI	CATG	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	1 cut(s)	116
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	2 cut(s)	33, 72
Hpy188III	TCNNGA	1 cut(s)	171
Hpy8I	GTNNAC	1 cut(s)	243
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	198
HpyCH4V	TGCA	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	68
LpnPI	CCDG	3 cut(s)	141, 156, 219
LweI	GCATC	1 cut(s)	168
MaeII	ACGT	1 cut(s)	198
MboII	GAAGA	2 cut(s)	101, 131
MnlI	CCTC	1 cut(s)	167
MseI	TTAA	2 cut(s)	17, 253
NdeI	CATATG	1 cut(s)	121
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	220
NmeAIII	GCCGAG	1 cut(s)	125
NspI	RCATGY	1 cut(s)	68
PaeI	GCATGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	116
Ppu21I	YACGTR	1 cut(s)	199
PspN4I	GGNNCC	1 cut(s)	220
RsaI	GTAC	3 cut(s)	26, 126, 197
RsaNI	GTAC	3 cut(s)	25, 125, 196
SaqAI	TTAA	2 cut(s)	17, 253
SetI	ASST	3 cut(s)	178, 201, 238
SfaNI	GCATC	1 cut(s)	168
SphI	GCATGC	1 cut(s)	68
SsiI	CCGC	1 cut(s)	222
TaiI	ACGT	1 cut(s)	201
TaqI	TCGA	1 cut(s)	87
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	116
Tru1I	TTAA	2 cut(s)	17, 253
Tru9I	TTAA	2 cut(s)	17, 253
TspDTI	ATGAA	2 cut(s)	108, 131
TspGWI	ACGGA	1 cut(s)	73
XceI	RCATGY	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.