Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010064

Physical Location & Seq

Genomic Coordinates Reverse (-)

39494131 .. 39497672

Gene Structure 3542 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00246380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAGATGAACTACAACTACGGCGGCGGCGGCCAAGAGAGCTGTCCGTACGATAATGGGGTGATGATGACCAGAGACCCCAAGCCCCGGCTGAGGTGGACGCCGGATCTTCACGACAGATTTGTCGATGCCGTCACTAAGCTCGGTGGCCCTGACAAGGCCACTCCTAAGTCTGTCTTGAGGCTAATGGGCTTGAAGGGATTGACATTGTACCATTTGAAAAGCCATTTGCAGAAGTATAGACTCGGACAGCAATCTCGGAAACAAAATTCTGCAGAACAAGGCAGAGAGAACAATGGGGATTCATTTGTACATTTCAGTAATCATCATTCCACAGGGTCTACCACCAAATCCTCAAGAGGTAATGCAGAACAAGGAACAATTCTGCTTTCGGAGGAACTCAAGTGTCAGATTGAAGTACAGAACAGATTGCAAGAGCAACTCGAGGTTCAAAAGAAGTTGCAAATGAGAATAGAAGCCCAAGGGAAGTACTTACAAGCTATATTAGAGAAAGCTCAAAAGGGCCTCTCTATTGACATGAAGGGGCCGATTACTGCAGAAGCCACAAGAGCGCAATCGACAGACTTCAATTGGGCTCTATCAAACTTCATGGAGAATATGAGTGAAGAAGAGAGAAGAGTAAACGTAATAGAGATGAATGAGGCTTATAAGAAGAGCAATGGTTCAACCTTCCAGTATGAAGAGGGGAATATTGGAGAAGAAAATAAAGATTCAAAGCTTAAGGTTGAGAGGGGTTCCATACATTTTGACTTAAATACTAAAGGTAGCTATGATTATGTTGGTACAAATGGAACTGAATACGAACCACGATGCTTTCGTTTACAAGATAGTTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

286

Amino Acids

32.49

Weight (kDa)

7.06

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	30 - 81	7.3e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	131 - 174	4.9e-20	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45580 AT5G45580 AT5G45580
fragaria_vesca	FvH4_5g23660
malus_domestica	MD00G1000500.v1.1 MD06G1022600.v1.1
prunus_persica	Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1
pyrus_communis	pycom16g25380
rosa_chinensis	RchiOBHm_Chr7g0212961
rosa_laevigata	RLG00000002842
rosa_multiflora	Rmu_sc0001684.1_g000008 Rmu_sc0037369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246380
rosa_rugosa	Rorug07G0138400
rosa_samantha	Rh7AG269700 Rh7BG265100 Rh7CG288900 Rh7DG277800
rosa_wichuraiana	Rw7G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AasI	GACNNNNNNGTC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	341
AciI	CCGC	3 cut(s)	24, 27, 30
AclWI	GGATC	1 cut(s)	114
AcoI	YGGCCR	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	6 cut(s)	50, 212, 312, 420, 491, 805
AfiI	CCNNNNNNNGG	3 cut(s)	87, 93, 157
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	7 cut(s)	196, 220, 416, 452, 589, 687, 735
AluBI	AGCT	6 cut(s)	42, 142, 500, 515, 739, 789
AluI	AGCT	6 cut(s)	42, 142, 500, 515, 739, 789
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	5 cut(s)	31, 148, 159, 523, 545
ApoI	RAATTY	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	574
AspS9I	GGNCC	3 cut(s)	149, 523, 545
AsuC2I	CCSGG	1 cut(s)	88
AsuHPI	GGTGA	1 cut(s)	73
AvaI	CYCGRG	1 cut(s)	443
BanII	GRGCYC	1 cut(s)	598
BbvCI	CCTCAGC	1 cut(s)	92
BceAI	ACGGC	2 cut(s)	37, 116
BcnI	CCSGG	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	69
BfmI	CTRYAG	2 cut(s)	273, 555
BfrI	CTTAAG	1 cut(s)	740
BisI	GCNGC	3 cut(s)	25, 28, 31
BlsI	GCNGC	3 cut(s)	26, 29, 32
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	3 cut(s)	149, 523, 545
BmiI	GGNNCC	2 cut(s)	546, 757
BmrFI	CCNGG	1 cut(s)	88
BmsI	GCATC	2 cut(s)	118, 821
Bpu10I	CCTNAGC	1 cut(s)	92
BpuEI	CTTGAG	3 cut(s)	199, 340, 386
BpuMI	CCSGG	1 cut(s)	88
BsaHI	GRCGYC	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	86, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 93, 157
Bse1I	ACTGG	1 cut(s)	694
Bse3DI	GCAATG	1 cut(s)	685
BseDI	CCNNGG	2 cut(s)	86, 481
BseLI	CCNNNNNNNGG	3 cut(s)	87, 93, 157
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	694
BshFI	GGCC	5 cut(s)	33, 150, 161, 525, 547
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	88, 104
BsiWI	CGTACG	1 cut(s)	48
BslI	CCNNNNNNNGG	3 cut(s)	87, 93, 157
BsmAI	GTCTC	1 cut(s)	69
BsnI	GGCC	5 cut(s)	33, 150, 161, 525, 547
Bso31I	GGTCTC	1 cut(s)	69
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	598
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	3 cut(s)	24, 27, 30
BspANI	GGCC	5 cut(s)	33, 150, 161, 525, 547
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	546, 757
BspMAI	CTGCAG	2 cut(s)	277, 559
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	668
BspTI	CTTAAG	1 cut(s)	740
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	685
BsrGI	TGTACA	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	694
BssECI	CCNNGG	2 cut(s)	86, 481
BssMI	GATC	1 cut(s)	106
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	481
Bst6I	CTCTTC	4 cut(s)	624, 631, 668, 696
BstACI	GRCGYC	1 cut(s)	101
BstAFI	CTTAAG	1 cut(s)	740
BstAUI	TGTACA	1 cut(s)	310
BstDEI	CTNAG	3 cut(s)	92, 138, 168
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 39, 569
BstSCI	CCNGG	1 cut(s)	86
BstSFI	CTRYAG	2 cut(s)	273, 555
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	5 cut(s)	33, 150, 161, 525, 547
CfoI	GCGC	1 cut(s)	574
Cfr13I	GGNCC	3 cut(s)	149, 523, 545
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	6 cut(s)	49, 211, 311, 419, 490, 804
CviAII	CATG	2 cut(s)	538, 610
CviQI	GTAC	6 cut(s)	49, 211, 311, 419, 490, 804
DdeI	CTNAG	3 cut(s)	92, 138, 168
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	31
Eam1104I	CTCTTC	4 cut(s)	624, 631, 668, 696
EarI	CTCTTC	4 cut(s)	624, 631, 668, 696
Eco130I	CCWWGG	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	598
Eco31I	GGTCTC	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	598
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	2 cut(s)	541, 613
FalI	AAGNNNNNCTT	2 cut(s)	161, 193
FatI	CATG	2 cut(s)	537, 609
FblI	GTMKAC	1 cut(s)	341
Fnu4HI	GCNGC	3 cut(s)	25, 28, 31
FriOI	GRGCYC	1 cut(s)	598
Fsp4HI	GCNGC	3 cut(s)	25, 28, 31
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	3 cut(s)	25, 28, 31
HaeIII	GGCC	5 cut(s)	33, 150, 161, 525, 547
HapII	CCGG	2 cut(s)	88, 104
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	574
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	2 cut(s)	541, 613
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	3 cut(s)	243, 302, 731
HpaII	CCGG	2 cut(s)	88, 104
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	5 cut(s)	99, 342, 643, 842, 854
Hpy188I	TCNGA	4 cut(s)	248, 261, 394, 411
Hpy188III	TCNNGA	3 cut(s)	113, 178, 357
Hpy8I	GTNNAC	5 cut(s)	99, 342, 643, 842, 854
HpyAV	CCTTC	3 cut(s)	190, 535, 700
HpyCH4IV	ACGT	1 cut(s)	645
HpyCH4V	TGCA	6 cut(s)	232, 275, 368, 433, 463, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 39, 569
HpyF3I	CTNAG	3 cut(s)	92, 138, 168
HpySE526I	ACGT	1 cut(s)	645
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	2 cut(s)	541, 613
HspAI	GCGC	1 cut(s)	572
Kzo9I	GATC	1 cut(s)	106
LguI	GCTCTTC	1 cut(s)	668
LpnPI	CCDG	6 cut(s)	85, 101, 117, 165, 321, 707
LweI	GCATC	2 cut(s)	118, 821
MaeII	ACGT	1 cut(s)	645
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	7 cut(s)	101, 638, 641, 648, 685, 713, 731
MfeI	CAATTG	1 cut(s)	589
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	598
MluCI	AATT	3 cut(s)	268, 381, 589
MlyI	GAGTC	1 cut(s)	237
MseI	TTAA	2 cut(s)	741, 773
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	2 cut(s)	88, 104
MspR9I	CCNGG	1 cut(s)	88
MunI	CAATTG	1 cut(s)	589
MwoI	GCNNNNNNNGC	3 cut(s)	30, 39, 569
NciI	CCSGG	1 cut(s)	88
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	2 cut(s)	541, 613
NlaIV	GGNNCC	2 cut(s)	546, 757
NmuCI	GTSAC	1 cut(s)	133
PaeR7I	CTCGAG	1 cut(s)	443
PciSI	GCTCTTC	1 cut(s)	668
PcsI	WCGNNNNNNNCGW	1 cut(s)	835
PfeI	GAWTC	2 cut(s)	302, 731
Pfl23II	CGTACG	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	26, 29, 32
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
PsiI	TTATAA	1 cut(s)	669
PspLI	CGTACG	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	546, 757
PspPI	GGNCC	3 cut(s)	149, 523, 545
PspXI	VCTCGAGB	1 cut(s)	443
PsrI	GAACNNNNNNTAC	1 cut(s)	34
PstI	CTGCAG	2 cut(s)	277, 559
PsuI	RGATCY	1 cut(s)	106
RsaI	GTAC	6 cut(s)	50, 212, 312, 420, 491, 805
RsaNI	GTAC	6 cut(s)	49, 211, 311, 419, 490, 804
SapI	GCTCTTC	1 cut(s)	668
SaqAI	TTAA	2 cut(s)	741, 773
SatI	GCNGC	3 cut(s)	25, 28, 31
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	3 cut(s)	149, 523, 545
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	237
ScrFI	CCNGG	1 cut(s)	88
SduI	GDGCHC	1 cut(s)	598
SfaNI	GCATC	2 cut(s)	118, 821
SfcI	CTRYAG	2 cut(s)	273, 555
Sfr274I	CTCGAG	1 cut(s)	443
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	5 cut(s)	178, 355, 401, 443, 740
SmoI	CTYRAG	5 cut(s)	178, 355, 401, 443, 740
Sse9I	AATT	3 cut(s)	268, 381, 589
SsiI	CCGC	3 cut(s)	24, 27, 30
SspI	AATATT	1 cut(s)	712
StyD4I	CCNGG	1 cut(s)	86
StyI	CCWWGG	1 cut(s)	481
TaiI	ACGT	1 cut(s)	648
TaqI	TCGA	3 cut(s)	126, 444, 578
TasI	AATT	3 cut(s)	268, 381, 589
TatI	WGTACW	3 cut(s)	310, 418, 489
TauI	GCSGC	3 cut(s)	27, 30, 33
TfiI	GAWTC	2 cut(s)	302, 731
Tru1I	TTAA	2 cut(s)	741, 773
Tru9I	TTAA	2 cut(s)	741, 773
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	6 cut(s)	23, 294, 554, 598, 671, 714
TspGWI	ACGGA	1 cut(s)	36
Vha464I	CTTAAG	1 cut(s)	740
XapI	RAATTY	1 cut(s)	268
XhoI	CTCGAG	1 cut(s)	443
XmiI	GTMKAC	1 cut(s)	341
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.