Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0010064

Physical Location & Seq

Genomic Coordinates Forward (+)

24234046 .. 24237918

Gene Structure 3873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG265100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGATGAACTACAATTACGGCGGCGGCGGCCAAGAGATCAGCTGTCCGTACGAGAATGGGGTGATGATGACCAGAGACCCCAAGCCTCGGCTGAGGTGGACGCCGGATCTTCACGACAGATTTGTCGACGCCGTCACTAAGCTCGGTGGCCCTGACAAGGCCACTCCTAAGTCTGTCTTGAGGCTAATGGGCTTGAAGGGATTGACATTGTACCATTTGAAAAGCCATTTGCAGAAGTATAGACTCGGACAGCAATCTCGGAAACAAAATTCTGCAGAACAAGGCAGAGAGAACAATGGGGATTCATTTGTACATTTCAGTAATCATCATTCCACAGGGTCAACCACCAAATCCTCAAGAGGTAATGCAGAACAAGGAACAATTCCGCTTTCGGAGGAACTCAAGTGTCAGATTGAAGTACAGAACAGATTGCAAGAGCAACTCGAGGTTCAAAAGAAGTTGCAAATGAGAATAGAAGCCCAAGGGAAGTACTTACAAGCTATATTAGAGAAAGCTCAACAGGGCCTCTCTATTGACATGAAGGGGCCGATTACTGCAGAAGCCACAAGAGCGCAATTGACAGACTTCAATTTGGCTCTATCAAACTTCATGGAGAATATTAGCGAAGAAGAGAGAAGAGTAAACATAATAGAGATGAATGAGGCTTATAAGAAGAGCAATGGTTCGACCTTCCAGATTTATGAAGAAGGGAATATTGGAGAAGAAAATAAAGATTCAAAGCTCAAGGTTGAGAGGGGTTCCATACATTTTGACTTAAATACTAAAGGCGCGGAGCCATTCAAGTGGCCATCTTCCCTCCTGAATGATGACATTTTCACTGTGCCAATAACAATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

287

Amino Acids

32.45

Weight (kDa)

6.68

Isoelectric Point (pI)

42.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	31 - 82	7.3e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	130 - 175	1.8e-20	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45580 AT5G45580 AT5G45580
fragaria_vesca	FvH4_5g23660
malus_domestica	MD00G1000500.v1.1 MD06G1022600.v1.1
prunus_persica	Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1
pyrus_communis	pycom16g25380
rosa_chinensis	RchiOBHm_Chr7g0212961
rosa_laevigata	RLG00000002842
rosa_multiflora	Rmu_sc0001684.1_g000008 Rmu_sc0037369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246380
rosa_rugosa	Rorug07G0138400
rosa_samantha	Rh7AG269700 Rh7BG265100 Rh7CG288900 Rh7DG277800
rosa_wichuraiana	Rw7G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
AasI	GACNNNNNNGTC	1 cut(s)	125
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	1 cut(s)	794
AciI	CCGC	5 cut(s)	24, 27, 30, 389, 794
AclWI	GGATC	1 cut(s)	117
AcoI	YGGCCR	2 cut(s)	31, 809
AcsI	RAATTY	1 cut(s)	271
AcyI	GRCGYC	2 cut(s)	104, 132
AfaI	GTAC	5 cut(s)	53, 215, 315, 423, 494
AfiI	CCNNNNNNNGG	2 cut(s)	90, 160
AgsI	TTSAA	7 cut(s)	199, 223, 419, 455, 592, 741, 805
AjuI	GAANNNNNNNTTGG	3 cut(s)	702, 734, 841
AluBI	AGCT	5 cut(s)	45, 145, 503, 518, 745
AluI	AGCT	5 cut(s)	45, 145, 503, 518, 745
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	117
Ama87I	CYCGRG	1 cut(s)	446
AoxI	GGCC	6 cut(s)	31, 151, 162, 526, 548, 809
ApoI	RAATTY	1 cut(s)	271
AspLEI	GCGC	2 cut(s)	577, 794
AspS9I	GGNCC	3 cut(s)	152, 526, 548
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	1 cut(s)	446
BalI	TGGCCA	1 cut(s)	811
BbvCI	CCTCAGC	1 cut(s)	95
BccI	CCATC	1 cut(s)	820
BceAI	ACGGC	2 cut(s)	37, 119
BcoDI	GTCTC	1 cut(s)	72
BfmI	CTRYAG	2 cut(s)	276, 558
BisI	GCNGC	3 cut(s)	25, 28, 31
BlsI	GCNGC	3 cut(s)	26, 29, 32
BmcAI	AGTACT	1 cut(s)	494
BmeT110I	CYCGRG	1 cut(s)	446
BmgT120I	GGNCC	3 cut(s)	152, 526, 548
BmiI	GGNNCC	3 cut(s)	549, 763, 798
Bpu10I	CCTNAGC	1 cut(s)	95
BpuEI	CTTGAG	4 cut(s)	202, 343, 389, 731
BsaHI	GRCGYC	2 cut(s)	104, 132
BsaI	GGTCTC	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	89, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 160
Bse3DI	GCAATG	1 cut(s)	688
BseDI	CCNNGG	2 cut(s)	89, 484
BseLI	CCNNNNNNNGG	2 cut(s)	90, 160
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	794
BshFI	GGCC	6 cut(s)	33, 153, 164, 528, 550, 811
BsiHKCI	CYCGRG	1 cut(s)	446
BsiSI	CCGG	1 cut(s)	107
BsiWI	CGTACG	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	90, 160
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	6 cut(s)	33, 153, 164, 528, 550, 811
Bso31I	GGTCTC	1 cut(s)	72
BsoBI	CYCGRG	1 cut(s)	446
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	39, 109
BspACI	CCGC	5 cut(s)	24, 27, 30, 389, 794
BspANI	GGCC	6 cut(s)	33, 153, 164, 528, 550, 811
BspCNI	CTCAG	1 cut(s)	87
BspFNI	CGCG	1 cut(s)	794
BspLI	GGNNCC	3 cut(s)	549, 763, 798
BspMAI	CTGCAG	2 cut(s)	280, 562
BspPI	GGATC	1 cut(s)	117
BspQI	GCTCTTC	1 cut(s)	671
BspTNI	GGTCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	688
BsrGI	TGTACA	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	89, 484
BssMI	GATC	2 cut(s)	39, 109
BssNI	GRCGYC	2 cut(s)	104, 132
BssT1I	CCWWGG	1 cut(s)	484
Bst4CI	ACNGT	1 cut(s)	844
Bst6I	CTCTTC	3 cut(s)	627, 634, 671
BstACI	GRCGYC	2 cut(s)	104, 132
BstAUI	TGTACA	1 cut(s)	313
BstDEI	CTNAG	3 cut(s)	95, 141, 171
BstFNI	CGCG	1 cut(s)	794
BstHHI	GCGC	2 cut(s)	577, 794
BstKTI	GATC	2 cut(s)	42, 112
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	2 cut(s)	39, 109
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 572
BstSFI	CTRYAG	2 cut(s)	276, 558
BstUI	CGCG	1 cut(s)	794
BstX2I	RGATCY	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	807
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	6 cut(s)	33, 153, 164, 528, 550, 811
BtsIMutI	CAGTG	1 cut(s)	840
CfoI	GCGC	2 cut(s)	577, 794
Cfr13I	GGNCC	3 cut(s)	152, 526, 548
CseI	GACGC	2 cut(s)	112, 140
Csp6I	GTAC	5 cut(s)	52, 214, 314, 422, 493
CviAII	CATG	2 cut(s)	541, 613
CviQI	GTAC	5 cut(s)	52, 214, 314, 422, 493
DdeI	CTNAG	3 cut(s)	95, 141, 171
DpnI	GATC	2 cut(s)	41, 111
DpnII	GATC	2 cut(s)	39, 109
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	2 cut(s)	31, 809
Eam1104I	CTCTTC	3 cut(s)	627, 634, 671
EarI	CTCTTC	3 cut(s)	627, 634, 671
Eco130I	CCWWGG	1 cut(s)	484
Eco31I	GGTCTC	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	446
EcoO109I	RGGNCCY	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	484
ErhI	CCWWGG	1 cut(s)	484
FaeI	CATG	2 cut(s)	544, 616
FaiI	YATR	9 cut(s)	243, 506, 542, 614, 650, 672, 705, 767, 862
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FatI	CATG	2 cut(s)	540, 612
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	25, 28, 31
Fsp4HI	GCNGC	3 cut(s)	25, 28, 31
GlaI	GCGC	2 cut(s)	576, 793
GluI	GCNGC	3 cut(s)	25, 28, 31
HaeIII	GGCC	6 cut(s)	33, 153, 164, 528, 550, 811
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	2 cut(s)	112, 140
HhaI	GCGC	2 cut(s)	577, 794
Hin1I	GRCGYC	2 cut(s)	104, 132
Hin1II	CATG	2 cut(s)	544, 616
Hin6I	GCGC	2 cut(s)	575, 792
HinP1I	GCGC	2 cut(s)	575, 792
HincII	GTYRAC	2 cut(s)	130, 345
HindII	GTYRAC	2 cut(s)	130, 345
HinfI	GANTC	3 cut(s)	246, 305, 737
HpaII	CCGG	1 cut(s)	107
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	4 cut(s)	102, 130, 345, 646
Hpy188I	TCNGA	4 cut(s)	251, 264, 397, 414
Hpy188III	TCNNGA	5 cut(s)	116, 181, 360, 697, 823
Hpy8I	GTNNAC	4 cut(s)	102, 130, 345, 646
Hpy99I	CGWCG	1 cut(s)	134
HpyAV	CCTTC	4 cut(s)	193, 538, 703, 704
HpyCH4III	ACNGT	1 cut(s)	844
HpyCH4V	TGCA	6 cut(s)	235, 278, 371, 436, 466, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 572
HpyF3I	CTNAG	3 cut(s)	95, 141, 171
Hsp92I	GRCGYC	2 cut(s)	104, 132
Hsp92II	CATG	2 cut(s)	544, 616
HspAI	GCGC	2 cut(s)	575, 792
Kzo9I	GATC	2 cut(s)	39, 109
LguI	GCTCTTC	1 cut(s)	671
LmnI	GCTCC	1 cut(s)	796
LpnPI	CCDG	7 cut(s)	88, 120, 168, 324, 509, 710, 836
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	2 cut(s)	41, 111
MboI	GATC	2 cut(s)	39, 109
MboII	GAAGA	8 cut(s)	104, 641, 644, 651, 688, 719, 737, 807
MfeI	CAATTG	1 cut(s)	578
MflI	RGATCY	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	811
MluCI	AATT	6 cut(s)	16, 271, 384, 578, 592, 855
MluNI	TGGCCA	1 cut(s)	811
MlyI	GAGTC	1 cut(s)	240
Mox20I	TGGCCA	1 cut(s)	811
MscI	TGGCCA	1 cut(s)	811
MseI	TTAA	1 cut(s)	779
MslI	CAYNNNNRTG	1 cut(s)	805
Msp20I	TGGCCA	1 cut(s)	811
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	1 cut(s)	107
MunI	CAATTG	1 cut(s)	578
MvnI	CGCG	1 cut(s)	794
MwoI	GCNNNNNNNGC	2 cut(s)	30, 572
NdeII	GATC	2 cut(s)	39, 109
NlaIII	CATG	2 cut(s)	544, 616
NlaIV	GGNNCC	3 cut(s)	549, 763, 798
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	136
PaeR7I	CTCGAG	1 cut(s)	446
PciSI	GCTCTTC	1 cut(s)	671
PfeI	GAWTC	2 cut(s)	305, 737
Pfl23II	CGTACG	1 cut(s)	51
PflFI	GACNNNGTC	1 cut(s)	134
PkrI	GCNGC	3 cut(s)	26, 29, 32
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
PsiI	TTATAA	1 cut(s)	672
PspLI	CGTACG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	549, 763, 798
PspPI	GGNCC	3 cut(s)	152, 526, 548
PspXI	VCTCGAGB	1 cut(s)	446
PsrI	GAACNNNNNNTAC	1 cut(s)	34
PstI	CTGCAG	2 cut(s)	280, 562
PsuI	RGATCY	1 cut(s)	109
PsyI	GACNNNGTC	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	45
RsaI	GTAC	5 cut(s)	53, 215, 315, 423, 494
RsaNI	GTAC	5 cut(s)	52, 214, 314, 422, 493
RseI	CAYNNNNRTG	1 cut(s)	805
SalI	GTCGAC	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	671
SaqAI	TTAA	1 cut(s)	779
SatI	GCNGC	3 cut(s)	25, 28, 31
Sau3AI	GATC	2 cut(s)	39, 109
Sau96I	GGNCC	3 cut(s)	152, 526, 548
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	1 cut(s)	240
SfcI	CTRYAG	2 cut(s)	276, 558
Sfr274I	CTCGAG	1 cut(s)	446
SlaI	CTCGAG	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	805
SmlI	CTYRAG	5 cut(s)	181, 358, 404, 446, 746
SmoI	CTYRAG	5 cut(s)	181, 358, 404, 446, 746
Sse9I	AATT	6 cut(s)	16, 271, 384, 578, 592, 855
SsiI	CCGC	5 cut(s)	24, 27, 30, 389, 794
SspI	AATATT	2 cut(s)	622, 718
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	844
TaqI	TCGA	3 cut(s)	129, 447, 689
TasI	AATT	6 cut(s)	16, 271, 384, 578, 592, 855
TatI	WGTACW	3 cut(s)	313, 421, 492
TauI	GCSGC	3 cut(s)	27, 30, 33
TfiI	GAWTC	2 cut(s)	305, 737
Tru1I	TTAA	1 cut(s)	779
Tru9I	TTAA	1 cut(s)	779
TscAI	CASTG	1 cut(s)	847
TseFI	GTSAC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	7 cut(s)	23, 297, 557, 601, 674, 720, 849
TspGWI	ACGGA	1 cut(s)	39
TspRI	CASTG	1 cut(s)	847
Tth111I	GACNNNGTC	1 cut(s)	134
XapI	RAATTY	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	446
XmiI	GTMKAC	1 cut(s)	129
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.