Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0010064

Physical Location & Seq

Genomic Coordinates Forward (+)

15018837 .. 15022925

Gene Structure 4089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g23660.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGAGATGAGTTACAACTACGGCGGCAACGGCGAAGAGAGCTGTCCGTACGAGAATGGGGTGATGATGACGAGAGACCCGAAGCCGAGGCTGAGGTGGACGCCGGATCTTCACGACAGATTTGTCGACGCCGTCACCAAGCTCGGTGGCCCTGACAAAGCGACTCCCAAATCCGTGTTGAGGCTAATGGGCTTGAAGGGATTGACATTGTACCATTTGAAAAGCCATTTGCAGAAGTATAGACTTGGACAGCAAACTCGGAAGCAAAACTCTTCAGAACAAGGCAGAGAGAACAACGGGGATTCATTTGTACATTTTAGTAATCATCATTCGACAGAGTCTACCACCAAATCCTCGAGAGGTAACTCAGAACAAGGAACAATTCCACTTTCGGAGGCAATCAAGTGCCAGATTGAAGTACAGAACAAATTGCAAGAGCAACTTGAGGTTCAAAAGAAGTTGCAAATGAGAATAGAAGCCCAAGGGAAGTACTTACAAGCTATATTAGAGAAAGCTCAAAAGGGTCTCTCTGTTGACATGAAGGGGCCGATTACTGCAGAAACCACAAGAGCACAATTGACAGACTTCAATTTGGCTCTATCAAACTTCATGGAGAATATGAGCGAAGAAGAGAGAAGAGTAAGCATGTTAGAGATGAATGAGGCTTATAAGAAGAGCAATGGTCCAACCTTCCAGATTTATGAGGAGGGGAATATTGCAGAAGAAAATAAAGATTCAAAGCTTAAGGTTGAGAGGGGTTCTATACACTTTGACTTAAATACTAAAGGTAGCTATGATTACGTTGGTTCAAATGGAAATGAATTCGAACCAAGATGCTTTCGGTTACAAGATAGTTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

288

Amino Acids

32.64

Weight (kDa)

6.68

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	30 - 81	7.3e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	129 - 174	7.3e-22	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45580 AT5G45580 AT5G45580
fragaria_vesca	FvH4_5g23660
malus_domestica	MD00G1000500.v1.1 MD06G1022600.v1.1
prunus_persica	Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1
pyrus_communis	pycom16g25380
rosa_chinensis	RchiOBHm_Chr7g0212961
rosa_laevigata	RLG00000002842
rosa_multiflora	Rmu_sc0001684.1_g000008 Rmu_sc0037369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246380
rosa_rugosa	Rorug07G0138400
rosa_samantha	Rh7AG269700 Rh7BG265100 Rh7CG288900 Rh7DG277800
rosa_wichuraiana	Rw7G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AasI	GACNNNNNNGTC	1 cut(s)	122
AccI	GTMKAC	2 cut(s)	126, 341
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	114
AcsI	RAATTY	1 cut(s)	821
AcuI	CTGAAG	1 cut(s)	258
AcyI	GRCGYC	2 cut(s)	101, 129
AfaI	GTAC	5 cut(s)	50, 212, 312, 420, 491
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflII	CTTAAG	1 cut(s)	743
AgsI	TTSAA	7 cut(s)	196, 220, 416, 452, 589, 738, 810
AluBI	AGCT	6 cut(s)	42, 142, 500, 515, 742, 792
AluI	AGCT	6 cut(s)	42, 142, 500, 515, 742, 792
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	2 cut(s)	69, 530
AlwI	GGATC	1 cut(s)	114
Ama87I	CYCGRG	1 cut(s)	355
AoxI	GGCC	2 cut(s)	148, 545
ApoI	RAATTY	1 cut(s)	821
AspS9I	GGNCC	3 cut(s)	149, 545, 683
AsuHPI	GGTGA	2 cut(s)	73, 127
AsuII	TTCGAA	1 cut(s)	825
AvaI	CYCGRG	1 cut(s)	355
AvaII	GGWCC	1 cut(s)	683
Bbv12I	GWGCWC	1 cut(s)	574
BbvCI	CCTCAGC	1 cut(s)	92
BceAI	ACGGC	3 cut(s)	37, 46, 116
BcoDI	GTCTC	2 cut(s)	69, 530
BfmI	CTRYAG	1 cut(s)	555
BfrI	CTTAAG	1 cut(s)	743
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
BmcAI	AGTACT	1 cut(s)	491
Bme18I	GGWCC	1 cut(s)	683
BmeT110I	CYCGRG	1 cut(s)	355
BmgT120I	GGNCC	3 cut(s)	149, 545, 683
BmiI	GGNNCC	1 cut(s)	546
BmsI	GCATC	1 cut(s)	824
Bpu10I	CCTNAGC	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	825
BpuEI	CTTGAG	1 cut(s)	464
BsaHI	GRCGYC	2 cut(s)	101, 129
BsaI	GGTCTC	2 cut(s)	69, 530
BsaJI	CCNNGG	2 cut(s)	86, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	685
BseDI	CCNNGG	2 cut(s)	86, 481
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	685
BseMII	CTCAG	2 cut(s)	83, 381
BseRI	GAGGAG	1 cut(s)	719
BshFI	GGCC	2 cut(s)	150, 547
BsiHKAI	GWGCWC	1 cut(s)	574
BsiHKCI	CYCGRG	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	104
BsiWI	CGTACG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmAI	GTCTC	2 cut(s)	69, 530
BsnI	GGCC	2 cut(s)	150, 547
Bso31I	GGTCTC	2 cut(s)	69, 530
BsoBI	CYCGRG	1 cut(s)	355
Bsp119I	TTCGAA	1 cut(s)	825
Bsp1286I	GDGCHC	1 cut(s)	574
Bsp1407I	TGTACA	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	150, 547
BspCNI	CTCAG	2 cut(s)	84, 380
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	1 cut(s)	114
BspQI	GCTCTTC	1 cut(s)	668
BspT104I	TTCGAA	1 cut(s)	825
BspTI	CTTAAG	1 cut(s)	743
BspTNI	GGTCTC	2 cut(s)	69, 530
BsrDI	GCAATG	1 cut(s)	685
BsrGI	TGTACA	1 cut(s)	310
BssECI	CCNNGG	2 cut(s)	86, 481
BssMI	GATC	1 cut(s)	106
BssNI	GRCGYC	2 cut(s)	101, 129
BssT1I	CCWWGG	1 cut(s)	481
Bst6I	CTCTTC	5 cut(s)	30, 277, 624, 631, 668
BstACI	GRCGYC	2 cut(s)	101, 129
BstAFI	CTTAAG	1 cut(s)	743
BstAUI	TGTACA	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	825
BstDEI	CTNAG	2 cut(s)	92, 367
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	2 cut(s)	69, 530
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 39
BstNSI	RCATGY	1 cut(s)	649
BstSFI	CTRYAG	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	150, 547
Cfr13I	GGNCC	3 cut(s)	149, 545, 683
CseI	GACGC	2 cut(s)	109, 137
Csp6I	GTAC	5 cut(s)	49, 211, 311, 419, 490
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	3 cut(s)	538, 610, 646
CviQI	GTAC	5 cut(s)	49, 211, 311, 419, 490
DdeI	CTNAG	2 cut(s)	92, 367
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eam1104I	CTCTTC	5 cut(s)	30, 277, 624, 631, 668
EarI	CTCTTC	5 cut(s)	30, 277, 624, 631, 668
Eco130I	CCWWGG	1 cut(s)	481
Eco31I	GGTCTC	2 cut(s)	69, 530
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	821
EcoT14I	CCWWGG	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	3 cut(s)	541, 613, 649
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	3 cut(s)	537, 609, 645
FblI	GTMKAC	2 cut(s)	126, 341
Fnu4HI	GCNGC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	150, 547
HapII	CCGG	1 cut(s)	104
HgaI	GACGC	2 cut(s)	109, 137
Hin1I	GRCGYC	2 cut(s)	101, 129
Hin1II	CATG	3 cut(s)	541, 613, 649
HincII	GTYRAC	2 cut(s)	127, 535
HindII	GTYRAC	2 cut(s)	127, 535
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	4 cut(s)	163, 302, 338, 734
HpaII	CCGG	1 cut(s)	104
HphI	GGTGA	2 cut(s)	73, 127
Hpy166II	GTNNAC	5 cut(s)	99, 127, 342, 535, 857
Hpy188I	TCNGA	4 cut(s)	261, 277, 370, 394
Hpy188III	TCNNGA	3 cut(s)	113, 357, 694
Hpy8I	GTNNAC	5 cut(s)	99, 127, 342, 535, 857
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	3 cut(s)	190, 535, 700
HpyCH4IV	ACGT	1 cut(s)	801
HpyCH4V	TGCA	5 cut(s)	232, 433, 463, 557, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 39
HpyF3I	CTNAG	2 cut(s)	92, 367
HpySE526I	ACGT	1 cut(s)	801
Hsp92I	GRCGYC	2 cut(s)	101, 129
Hsp92II	CATG	3 cut(s)	541, 613, 649
Kzo9I	GATC	1 cut(s)	106
LguI	GCTCTTC	1 cut(s)	668
LpnPI	CCDG	4 cut(s)	117, 165, 422, 707
LweI	GCATC	1 cut(s)	824
MaeII	ACGT	1 cut(s)	801
MaeIII	GTNAC	4 cut(s)	11, 133, 362, 843
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	8 cut(s)	47, 101, 264, 638, 641, 648, 685, 734
MfeI	CAATTG	1 cut(s)	575
MflI	RGATCY	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	574
MluCI	AATT	5 cut(s)	381, 428, 575, 589, 821
MlyI	GAGTC	2 cut(s)	157, 347
MmeI	TCCRAC	1 cut(s)	710
MseI	TTAA	2 cut(s)	744, 776
MspCI	CTTAAG	1 cut(s)	743
MspI	CCGG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	575
MwoI	GCNNNNNNNGC	2 cut(s)	30, 39
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	3 cut(s)	541, 613, 649
NlaIV	GGNNCC	1 cut(s)	546
NmeAIII	GCCGAG	1 cut(s)	111
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	649
NspV	TTCGAA	1 cut(s)	825
PaeR7I	CTCGAG	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	668
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PfeI	GAWTC	2 cut(s)	302, 734
Pfl23II	CGTACG	1 cut(s)	48
PflFI	GACNNNGTC	2 cut(s)	131, 337
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	2 cut(s)	157, 346
PpsI	GAGTC	2 cut(s)	157, 346
PsiI	TTATAA	1 cut(s)	669
PspLI	CGTACG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	546
PspPI	GGNCC	3 cut(s)	149, 545, 683
PstI	CTGCAG	1 cut(s)	559
PsuI	RGATCY	1 cut(s)	106
PsyI	GACNNNGTC	2 cut(s)	131, 337
RsaI	GTAC	5 cut(s)	50, 212, 312, 420, 491
RsaNI	GTAC	5 cut(s)	49, 211, 311, 419, 490
SalI	GTCGAC	1 cut(s)	125
SapI	GCTCTTC	1 cut(s)	668
SaqAI	TTAA	2 cut(s)	744, 776
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	3 cut(s)	149, 545, 683
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	2 cut(s)	157, 347
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	1 cut(s)	824
SfcI	CTRYAG	1 cut(s)	555
Sfr274I	CTCGAG	1 cut(s)	355
SfuI	TTCGAA	1 cut(s)	825
SinI	GGWCC	1 cut(s)	683
SlaI	CTCGAG	1 cut(s)	355
SmlI	CTYRAG	3 cut(s)	355, 443, 743
SmoI	CTYRAG	3 cut(s)	355, 443, 743
Sse9I	AATT	5 cut(s)	381, 428, 575, 589, 821
SsiI	CCGC	1 cut(s)	24
SspI	AATATT	1 cut(s)	715
StyI	CCWWGG	1 cut(s)	481
TaiI	ACGT	1 cut(s)	804
TaqI	TCGA	4 cut(s)	126, 332, 356, 825
TasI	AATT	5 cut(s)	381, 428, 575, 589, 821
TatI	WGTACW	3 cut(s)	310, 418, 489
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	302, 734
Tru1I	TTAA	2 cut(s)	744, 776
Tru9I	TTAA	2 cut(s)	744, 776
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	5 cut(s)	294, 554, 598, 671, 834
TspGWI	ACGGA	2 cut(s)	36, 163
Tth111I	GACNNNGTC	2 cut(s)	131, 337
Vha464I	CTTAAG	1 cut(s)	743
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	1 cut(s)	821
XceI	RCATGY	1 cut(s)	649
XhoI	CTCGAG	1 cut(s)	355
XmiI	GTMKAC	2 cut(s)	126, 341
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.