Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037369.1

Orthogroup ID

OG0010064

Physical Location & Seq

Genomic Coordinates Reverse (-)

965 .. 1723

Gene Structure 759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037369.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ctgatcaatagtaatactgaaaacagaacaattccgctttcggaggatctcaagtgtcagattgaagtacagaacagattgcaagagcaactcgaggttcaaaagaagctgcaaatgagaatagaagcccaagggaagtacttacaaactatattagagaaagctcaaaagggcctctctattgacatgaaggggccgattactgcagaagccacaagagcgcaattgacagacttcaatttggctctatcaaacttcatggagaatatgagcgaagaagagagaagagtcaacataatagagatgaatgaggcttataagaagagcaatggttcaactttccagatttatgaagaggggaatattggaggagaaaataaagattcaaagctaaaggttgagaggggttccatacattttgacttaaatactaaaggtagttatgattatgttggtacaaatggtactgaattcgaaccacgatgctttcgtttacaagatagttcactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

170

Amino Acids

19.45

Weight (kDa)

5.12

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45580 AT5G45580 AT5G45580
fragaria_vesca	FvH4_5g23660
malus_domestica	MD00G1000500.v1.1 MD06G1022600.v1.1
prunus_persica	Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1
pyrus_communis	pycom16g25380
rosa_chinensis	RchiOBHm_Chr7g0212961
rosa_laevigata	RLG00000002842
rosa_multiflora	Rmu_sc0001684.1_g000008 Rmu_sc0037369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246380
rosa_rugosa	Rorug07G0138400
rosa_samantha	Rh7AG269700 Rh7BG265100 Rh7CG288900 Rh7DG277800
rosa_wichuraiana	Rw7G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	318
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	470
AfaI	GTAC	4 cut(s)	69, 140, 457, 466
AgsI	TTSAA	5 cut(s)	65, 101, 238, 336, 387
AluBI	AGCT	3 cut(s)	109, 164, 391
AluI	AGCT	3 cut(s)	109, 164, 391
AlwI	GGATC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	2 cut(s)	172, 194
ApeKI	GCWGC	1 cut(s)	109
ApoI	RAATTY	1 cut(s)	470
AspLEI	GCGC	1 cut(s)	223
AspS9I	GGNCC	2 cut(s)	172, 194
AsuII	TTCGAA	1 cut(s)	474
AvaI	CYCGRG	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	96
BclI	TGATCA	1 cut(s)	3
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
BmcAI	AGTACT	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	172, 194
BmiI	GGNNCC	2 cut(s)	195, 409
BmsI	GCATC	1 cut(s)	473
Bpu14I	TTCGAA	1 cut(s)	474
BpuEI	CTTGAG	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	130
BseMI	GCAATG	1 cut(s)	334
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	96
BshFI	GGCC	2 cut(s)	174, 196
BsiHKCI	CYCGRG	1 cut(s)	92
BsnI	GGCC	2 cut(s)	174, 196
BsoBI	CYCGRG	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	474
Bsp143I	GATC	2 cut(s)	3, 46
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	2 cut(s)	174, 196
BspLI	GGNNCC	2 cut(s)	195, 409
BspMAI	CTGCAG	1 cut(s)	208
BspPI	GGATC	1 cut(s)	54
BspQI	GCTCTTC	1 cut(s)	317
BspT104I	TTCGAA	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	2 cut(s)	3, 46
BssT1I	CCWWGG	1 cut(s)	130
Bst6I	CTCTTC	4 cut(s)	273, 280, 317, 348
BstBI	TTCGAA	1 cut(s)	474
BstHHI	GCGC	1 cut(s)	223
BstKTI	GATC	2 cut(s)	6, 49
BstMBI	GATC	2 cut(s)	3, 46
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	174, 196
CfoI	GCGC	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	172, 194
Csp6I	GTAC	4 cut(s)	68, 139, 456, 465
CviAII	CATG	2 cut(s)	187, 259
CviJI	RGCY	9 cut(s)	109, 128, 164, 174, 196, 212, 245, 314, 391
CviKI_1	RGCY	9 cut(s)	109, 128, 164, 174, 196, 212, 245, 314, 391
CviQI	GTAC	4 cut(s)	68, 139, 456, 465
DpnI	GATC	2 cut(s)	5, 48
DpnII	GATC	2 cut(s)	3, 46
Eam1104I	CTCTTC	4 cut(s)	273, 280, 317, 348
EarI	CTCTTC	4 cut(s)	273, 280, 317, 348
Eco130I	CCWWGG	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRI	GAATTC	1 cut(s)	470
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	2 cut(s)	190, 262
FatI	CATG	2 cut(s)	186, 258
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	110
Fsp4HI	GCNGC	1 cut(s)	110
GlaI	GCGC	1 cut(s)	222
GluI	GCNGC	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	174, 196
HhaI	GCGC	1 cut(s)	223
Hin1II	CATG	2 cut(s)	190, 262
Hin6I	GCGC	1 cut(s)	221
HinP1I	GCGC	1 cut(s)	221
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	288, 383
Hpy166II	GTNNAC	3 cut(s)	292, 494, 506
Hpy188I	TCNGA	2 cut(s)	43, 60
Hpy188III	TCNNGA	1 cut(s)	343
Hpy8I	GTNNAC	3 cut(s)	292, 494, 506
HpyAV	CCTTC	1 cut(s)	184
HpyCH4V	TGCA	3 cut(s)	82, 112, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
Hsp92II	CATG	2 cut(s)	190, 262
HspAI	GCGC	1 cut(s)	221
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 46
LguI	GCTCTTC	1 cut(s)	317
LpnPI	CCDG	1 cut(s)	356
Lsp1109I	GCAGC	1 cut(s)	96
LweI	GCATC	1 cut(s)	473
MalI	GATC	2 cut(s)	5, 48
MboI	GATC	2 cut(s)	3, 46
MboII	GAAGA	5 cut(s)	287, 290, 297, 334, 365
MfeI	CAATTG	1 cut(s)	224
MflI	RGATCY	1 cut(s)	46
MluCI	AATT	4 cut(s)	30, 224, 238, 470
MlyI	GAGTC	1 cut(s)	297
MnlI	CCTC	7 cut(s)	37, 88, 185, 304, 349, 362, 396
MseI	TTAA	1 cut(s)	425
MunI	CAATTG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	218
NdeII	GATC	2 cut(s)	3, 46
NlaIII	CATG	2 cut(s)	190, 262
NlaIV	GGNNCC	2 cut(s)	195, 409
NspV	TTCGAA	1 cut(s)	474
PaeR7I	CTCGAG	1 cut(s)	92
PciSI	GCTCTTC	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	487
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	111
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
PsiI	TTATAA	1 cut(s)	318
PspN4I	GGNNCC	2 cut(s)	195, 409
PspPI	GGNCC	2 cut(s)	172, 194
PspXI	VCTCGAGB	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	4 cut(s)	69, 140, 457, 466
RsaNI	GTAC	4 cut(s)	68, 139, 456, 465
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	425
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	2 cut(s)	3, 46
Sau96I	GGNCC	2 cut(s)	172, 194
ScaI	AGTACT	1 cut(s)	140
SchI	GAGTC	1 cut(s)	297
SetI	ASST	6 cut(s)	99, 111, 166, 393, 399, 439
SfaNI	GCATC	1 cut(s)	473
SfcI	CTRYAG	1 cut(s)	204
Sfr274I	CTCGAG	1 cut(s)	92
SfuI	TTCGAA	1 cut(s)	474
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	2 cut(s)	50, 92
SmoI	CTYRAG	2 cut(s)	50, 92
Sse9I	AATT	4 cut(s)	30, 224, 238, 470
SsiI	CCGC	1 cut(s)	35
SspI	AATATT	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	130
TaqI	TCGA	2 cut(s)	93, 474
TasI	AATT	4 cut(s)	30, 224, 238, 470
TatI	WGTACW	2 cut(s)	67, 138
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	425
Tru9I	TTAA	1 cut(s)	425
TseI	GCWGC	1 cut(s)	109
TspDTI	ATGAA	4 cut(s)	203, 247, 320, 366
XapI	RAATTY	1 cut(s)	470
XhoI	CTCGAG	1 cut(s)	92
ZrmI	AGTACT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.