Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0010064

Physical Location & Seq

Genomic Coordinates Reverse (-)

2655528 .. 2658228

Gene Structure 2701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G023700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGAAAGGAATTATGGAGGTGGCTGTGATGGGGAAGGGAATTGTGGATACGAGAATGGGGTGATGATGACAAGAGACCCCAAACCAAGGCTAAGGTGGACGCCTGATCTTCATGACAGATTTGTAGATGCTGTCACTAAACTTGGTGGCCCTGACAAAGCAACTCCCAAGTCTGTCTTGAGGCTAATGGGCTTGAAGGGATTAACATTGTACCACTTGAAAAGCCATTTGCAGAAGTACAGGCTTGGACAGCATGCTCGGAAACAAAACTCTGGAGAAGAACACAACAGAGAGAATAATCGGGATTCATATGTACATTTCAGTAATCATCATTCAACAGGTTCGAGCGCCAAATCGTCGAGAGGTGGTAATGCCGAACAAGGAACACTTCCATTTTCTGAGGCACTCAAGTGTCAGATTGAAGTACAAAACAGATTGCAAGAGCAGCTTGAGGTTCAGAAGAAGTTGCAGATGAGAATAGAAGCCCAAGGCAAGTACTTGCAAGCCATATTGGAGAAGGCCCAAAAGGGCCTCTCCCTAGACATGAAGGGGCCCACTACTATAGAAGCTACAAGAGCCCAATTAACTGACTTCAATTTGGCTCTATCAAATTTTATGGAGAATATAAATGAGGAGGACAGAAGAGGAAAGAGCAATGGTTCAACTTTTGAGATTTATGAAGAGGGAAATACAGAAGAACATAAAGATGCAAAGCTTAAGGTTGAGAGGGGCTCTATAAATTTTGACTTAAATACTAAAGGGAGCTTTGATTATGTTGGTTCAAATGCAGGTGATTTCGAACCGAGATGCTTTCGTTTACTAGATACTACACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

279

Amino Acids

31.34

Weight (kDa)

7.71

Isoelectric Point (pI)

30.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45580 AT5G45580 AT5G45580
fragaria_vesca	FvH4_5g23660
malus_domestica	MD00G1000500.v1.1 MD06G1022600.v1.1
prunus_persica	Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1
pyrus_communis	pycom16g25380
rosa_chinensis	RchiOBHm_Chr7g0212961
rosa_laevigata	RLG00000002842
rosa_multiflora	Rmu_sc0001684.1_g000008 Rmu_sc0037369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246380
rosa_rugosa	Rorug07G0138400
rosa_samantha	Rh7AG269700 Rh7BG265100 Rh7CG288900 Rh7DG277800
rosa_wichuraiana	Rw7G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	779
Acc36I	ACCTGC	1 cut(s)	779
AcsI	RAATTY	2 cut(s)	610, 739
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	5 cut(s)	212, 239, 315, 426, 497
AfiI	CCNNNNNNNGG	1 cut(s)	87
AflII	CTTAAG	1 cut(s)	716
AgsI	TTSAA	7 cut(s)	196, 220, 336, 422, 595, 663, 783
AleI	CACNNNNGTG	1 cut(s)	409
AluBI	AGCT	4 cut(s)	448, 569, 715, 765
AluI	AGCT	4 cut(s)	448, 569, 715, 765
Alw26I	GTCTC	1 cut(s)	69
AoxI	GGCC	4 cut(s)	148, 519, 529, 551
ApaI	GGGCCC	1 cut(s)	555
ApeKI	GCWGC	1 cut(s)	445
ApoI	RAATTY	2 cut(s)	610, 739
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	5 cut(s)	149, 520, 529, 551, 552
AsuHPI	GGTGA	2 cut(s)	73, 803
AsuII	TTCGAA	1 cut(s)	798
BaeGI	GKGCMC	1 cut(s)	555
BanII	GRGCYC	3 cut(s)	555, 580, 734
BbvI	GCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	23
BciVI	GTATCC	1 cut(s)	41
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	2 cut(s)	539, 821
BfmI	CTRYAG	1 cut(s)	561
BfoI	RGCGCY	1 cut(s)	351
BfrI	CTTAAG	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	779
BfuI	GTATCC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	446
BlsI	GCNGC	1 cut(s)	447
BmcAI	AGTACT	1 cut(s)	497
BmgT120I	GGNCC	5 cut(s)	149, 520, 529, 551, 552
BmiI	GGNNCC	2 cut(s)	552, 553
BmsI	GCATC	3 cut(s)	118, 697, 797
BplI	GAGNNNNNCTC	2 cut(s)	716, 748
BpmI	CTGGAG	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	92
Bpu14I	TTCGAA	1 cut(s)	798
BpuEI	CTTGAG	3 cut(s)	199, 392, 470
BsaHI	GRCGYC	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	86, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
Bse3DI	GCAATG	1 cut(s)	661
BseDI	CCNNGG	2 cut(s)	86, 487
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	661
BseMII	CTCAG	1 cut(s)	390
BseRI	GAGGAG	1 cut(s)	647
BseSI	GKGCMC	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	457
BshFI	GGCC	4 cut(s)	150, 521, 531, 553
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	69
BsnI	GGCC	4 cut(s)	150, 521, 531, 553
Bso31I	GGTCTC	1 cut(s)	69
Bsp119I	TTCGAA	1 cut(s)	798
Bsp120I	GGGCCC	1 cut(s)	551
Bsp1286I	GDGCHC	3 cut(s)	555, 580, 734
Bsp1407I	TGTACA	1 cut(s)	313
Bsp143I	GATC	1 cut(s)	106
BspANI	GGCC	4 cut(s)	150, 521, 531, 553
BspCNI	CTCAG	1 cut(s)	391
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	552, 553
BspMI	ACCTGC	1 cut(s)	779
BspT104I	TTCGAA	1 cut(s)	798
BspTI	CTTAAG	1 cut(s)	716
BspTNI	GGTCTC	1 cut(s)	69
BsrDI	GCAATG	1 cut(s)	661
BsrGI	TGTACA	1 cut(s)	313
BssECI	CCNNGG	2 cut(s)	86, 487
BssMI	GATC	1 cut(s)	106
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	2 cut(s)	86, 487
Bst6I	CTCTTC	2 cut(s)	637, 675
BstACI	GRCGYC	1 cut(s)	101
BstAFI	CTTAAG	1 cut(s)	716
BstAUI	TGTACA	1 cut(s)	313
BstBI	TTCGAA	1 cut(s)	798
BstC8I	GCNNGC	2 cut(s)	255, 504
BstDEI	CTNAG	2 cut(s)	92, 399
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 445, 575
BstNSI	RCATGY	1 cut(s)	257
BstSFI	CTRYAG	1 cut(s)	561
BstSLI	GKGCMC	1 cut(s)	555
BstV1I	GCAGC	1 cut(s)	457
BsuI	GTATCC	1 cut(s)	41
BsuRI	GGCC	4 cut(s)	150, 521, 531, 553
BveI	ACCTGC	1 cut(s)	779
Cac8I	GCNNGC	2 cut(s)	255, 504
CciI	TCATGA	1 cut(s)	112
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	5 cut(s)	149, 520, 529, 551, 552
CseI	GACGC	1 cut(s)	109
Csp6I	GTAC	5 cut(s)	211, 238, 314, 425, 496
CviAII	CATG	3 cut(s)	113, 254, 544
CviQI	GTAC	5 cut(s)	211, 238, 314, 425, 496
DdeI	CTNAG	2 cut(s)	92, 399
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
Eam1104I	CTCTTC	2 cut(s)	637, 675
EarI	CTCTTC	2 cut(s)	637, 675
Eco130I	CCWWGG	2 cut(s)	86, 487
Eco24I	GRGCYC	3 cut(s)	555, 580, 734
Eco31I	GGTCTC	1 cut(s)	69
EcoO109I	RGGNCCY	2 cut(s)	529, 551
EcoT14I	CCWWGG	2 cut(s)	86, 487
EcoT38I	GRGCYC	3 cut(s)	555, 580, 734
ErhI	CCWWGG	2 cut(s)	86, 487
FaeI	CATG	3 cut(s)	116, 257, 547
FalI	AAGNNNNNCTT	6 cut(s)	161, 193, 372, 404, 432, 464
FatI	CATG	3 cut(s)	112, 253, 543
FauNDI	CATATG	1 cut(s)	310
Fnu4HI	GCNGC	1 cut(s)	446
FriOI	GRGCYC	3 cut(s)	555, 580, 734
Fsp4HI	GCNGC	1 cut(s)	446
FspBI	CTAG	2 cut(s)	539, 821
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	1 cut(s)	446
GsuI	CTGGAG	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	4 cut(s)	150, 521, 531, 553
HgaI	GACGC	1 cut(s)	109
HhaI	GCGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	3 cut(s)	116, 257, 547
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	1 cut(s)	305
HphI	GGTGA	2 cut(s)	73, 803
Hpy166II	GTNNAC	2 cut(s)	99, 818
Hpy188I	TCNGA	4 cut(s)	261, 400, 417, 459
Hpy188III	TCNNGA	5 cut(s)	113, 178, 273, 302, 360
Hpy8I	GTNNAC	2 cut(s)	99, 818
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	4 cut(s)	29, 190, 511, 541
HpyCH4V	TGCA	6 cut(s)	232, 439, 469, 502, 710, 788
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 445, 575
HpyF3I	CTNAG	2 cut(s)	92, 399
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	3 cut(s)	116, 257, 547
HspAI	GCGC	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	762
LpnPI	CCDG	6 cut(s)	117, 165, 226, 258, 324, 774
Lsp1109I	GCAGC	1 cut(s)	457
LweI	GCATC	3 cut(s)	118, 697, 797
MaeI	CTAG	2 cut(s)	539, 821
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	6 cut(s)	101, 290, 472, 654, 692, 707
MhlI	GDGCHC	3 cut(s)	555, 580, 734
MluCI	AATT	6 cut(s)	10, 40, 581, 595, 610, 739
MseI	TTAA	4 cut(s)	203, 584, 717, 749
MslI	CAYNNNNRTG	2 cut(s)	409, 705
MspCI	CTTAAG	1 cut(s)	716
MwoI	GCNNNNNNNGC	3 cut(s)	250, 445, 575
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	3 cut(s)	116, 257, 547
NlaIV	GGNNCC	2 cut(s)	552, 553
NmuCI	GTSAC	1 cut(s)	133
NspI	RCATGY	1 cut(s)	257
NspV	TTCGAA	1 cut(s)	798
OliI	CACNNNNGTG	1 cut(s)	409
PaeI	GCATGC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	112
PaqCI	CACCTGC	1 cut(s)	779
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	552, 553
PspOMI	GGGCCC	1 cut(s)	551
PspPI	GGNCC	5 cut(s)	149, 520, 529, 551, 552
RsaI	GTAC	5 cut(s)	212, 239, 315, 426, 497
RsaNI	GTAC	5 cut(s)	211, 238, 314, 425, 496
RseI	CAYNNNNRTG	2 cut(s)	409, 705
SaqAI	TTAA	4 cut(s)	203, 584, 717, 749
SatI	GCNGC	1 cut(s)	446
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	5 cut(s)	149, 520, 529, 551, 552
ScaI	AGTACT	1 cut(s)	497
SduI	GDGCHC	3 cut(s)	555, 580, 734
SfaNI	GCATC	3 cut(s)	118, 697, 797
SfcI	CTRYAG	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	798
SmiMI	CAYNNNNRTG	2 cut(s)	409, 705
SmlI	CTYRAG	4 cut(s)	178, 407, 449, 716
SmoI	CTYRAG	4 cut(s)	178, 407, 449, 716
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	6 cut(s)	10, 40, 581, 595, 610, 739
SspMI	CTAG	2 cut(s)	539, 821
StyI	CCWWGG	2 cut(s)	86, 487
TaqI	TCGA	3 cut(s)	344, 359, 798
TasI	AATT	6 cut(s)	10, 40, 581, 595, 610, 739
TatI	WGTACW	4 cut(s)	237, 313, 424, 495
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	4 cut(s)	203, 584, 717, 749
Tru9I	TTAA	4 cut(s)	203, 584, 717, 749
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	4 cut(s)	101, 297, 560, 693
Vha464I	CTTAAG	1 cut(s)	716
XapI	RAATTY	2 cut(s)	610, 739
XceI	RCATGY	1 cut(s)	257
XcmI	CCANNNNNNNNNTGG	1 cut(s)	93
XspI	CTAG	2 cut(s)	539, 821
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.