Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0010064

Physical Location & Seq

Genomic Coordinates Reverse (-)

40552528 .. 40555045

Gene Structure 2518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGAGATGAACTACAACGACGGCGGCGGCCAAGAGAGCTGTCCGTACGAGAATGGGGTGATGATGACCAGAGACCCTAAGCCCCGGCTGAGGTGGACGCCGGATCTTCACGACAGATTTGTCGACGCCGTCACTAAGCTCGGTGGCCCTGACAAGGCCACTCCTAAGTCTGTCTTGAGGCTAATGGGCTTGAAGGGATTGACATTGTACCATTTGAAAAGCCATTTGCAGAAGTATAGACTCGGACAGCAATCTCGGAAACAAAATTCTGCAGAACAAGGCAGAGAGAACAATGGGGATTCATTTGTACATTTCAGTAATCATCATTCCACAGGATCTACCACCAAATCCTCAAGTGGTAATGCAGAACAACGAACAATTCTGCTTTCGGAGGAACTCAAGTGTCAGATTGAAGTACAGAACAGATTGCAAGAGCAACTCGAGGTTCAAAAGAAGTTGCAAATGCGAATAGAAGCCCAAGGGAAGTACTTACAAGCTATATTAGAGAAAGCTCAAAAGGGCCTCTCTATTGACATGAAGGGGCCGATTACTGCAGACGCCACAAGAGTGCAATTGACAGACTTCAATTTGGCTCTATCAAACTTCATGGAGAATATGAGTGAAGAAGAGAGAAGAGTAAACGTAGTAGAGATGAATGAGGCTTATAAGAAGAGCAATGGTTCAACCTTCCAGATTTATGAAGAGGGGAATATTGGAGAAGAAAATAAAGATTCAAAGCTTAAGGTTGAGAGGGGTTCCGTACATTTTGACTTAAATACTAAAGGTAGCTATGATTATGTTGGTACAAATGGAACTGAATTCGAACCACGATGCTTTCGTTTACAAGATAGTTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

287

Amino Acids

32.46

Weight (kDa)

6.68

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	29 - 80	7.3e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	130 - 173	4.9e-20	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45580 AT5G45580 AT5G45580
fragaria_vesca	FvH4_5g23660
malus_domestica	MD00G1000500.v1.1 MD06G1022600.v1.1
prunus_persica	Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1
pyrus_communis	pycom16g25380
rosa_chinensis	RchiOBHm_Chr7g0212961
rosa_laevigata	RLG00000002842
rosa_multiflora	Rmu_sc0001684.1_g000008 Rmu_sc0037369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246380
rosa_rugosa	Rorug07G0138400
rosa_samantha	Rh7AG269700 Rh7BG265100 Rh7CG288900 Rh7DG277800
rosa_wichuraiana	Rw7G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	666
AasI	GACNNNNNNGTC	1 cut(s)	119
AccI	GTMKAC	1 cut(s)	123
AciI	CCGC	2 cut(s)	24, 27
AclWI	GGATC	2 cut(s)	111, 343
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	2 cut(s)	265, 818
AcyI	GRCGYC	3 cut(s)	98, 126, 558
AfaI	GTAC	7 cut(s)	47, 209, 309, 417, 488, 762, 805
AfiI	CCNNNNNNNGG	2 cut(s)	90, 154
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	7 cut(s)	193, 217, 413, 449, 586, 684, 735
AleI	CACNNNNGTG	1 cut(s)	566
AluBI	AGCT	6 cut(s)	39, 139, 497, 512, 739, 789
AluI	AGCT	6 cut(s)	39, 139, 497, 512, 739, 789
Alw26I	GTCTC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	111, 343
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	5 cut(s)	28, 145, 156, 520, 542
ApoI	RAATTY	2 cut(s)	265, 818
AspS9I	GGNCC	3 cut(s)	146, 520, 542
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	70
AsuII	TTCGAA	1 cut(s)	822
AvaI	CYCGRG	1 cut(s)	440
BbvCI	CCTCAGC	1 cut(s)	89
BceAI	ACGGC	2 cut(s)	37, 113
BcnI	CCSGG	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	2 cut(s)	270, 552
BfrI	CTTAAG	1 cut(s)	740
BisI	GCNGC	2 cut(s)	25, 28
BlsI	GCNGC	2 cut(s)	26, 29
BmcAI	AGTACT	1 cut(s)	488
Bme1390I	CCNGG	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	3 cut(s)	146, 520, 542
BmiI	GGNNCC	2 cut(s)	543, 757
BmrFI	CCNGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	821
Bpu10I	CCTNAGC	2 cut(s)	78, 89
Bpu14I	TTCGAA	1 cut(s)	822
BpuEI	CTTGAG	3 cut(s)	196, 337, 383
BpuMI	CCSGG	1 cut(s)	85
BsaHI	GRCGYC	3 cut(s)	98, 126, 558
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	2 cut(s)	83, 478
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 154
Bse3DI	GCAATG	1 cut(s)	682
BseDI	CCNNGG	2 cut(s)	83, 478
BseLI	CCNNNNNNNGG	2 cut(s)	90, 154
BseMI	GCAATG	1 cut(s)	682
BseMII	CTCAG	1 cut(s)	80
BshFI	GGCC	5 cut(s)	30, 147, 158, 522, 544
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	85, 101
BsiWI	CGTACG	1 cut(s)	45
BslI	CCNNNNNNNGG	2 cut(s)	90, 154
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	5 cut(s)	30, 147, 158, 522, 544
Bso31I	GGTCTC	1 cut(s)	66
BsoBI	CYCGRG	1 cut(s)	440
Bsp119I	TTCGAA	1 cut(s)	822
Bsp1407I	TGTACA	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	103, 335
BspACI	CCGC	2 cut(s)	24, 27
BspANI	GGCC	5 cut(s)	30, 147, 158, 522, 544
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	543, 757
BspMAI	CTGCAG	2 cut(s)	274, 556
BspPI	GGATC	2 cut(s)	111, 343
BspQI	GCTCTTC	1 cut(s)	665
BspT104I	TTCGAA	1 cut(s)	822
BspTI	CTTAAG	1 cut(s)	740
BspTNI	GGTCTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	682
BsrGI	TGTACA	1 cut(s)	307
BssECI	CCNNGG	2 cut(s)	83, 478
BssMI	GATC	2 cut(s)	103, 335
BssNI	GRCGYC	3 cut(s)	98, 126, 558
BssT1I	CCWWGG	1 cut(s)	478
Bst6I	CTCTTC	4 cut(s)	621, 628, 665, 696
BstACI	GRCGYC	3 cut(s)	98, 126, 558
BstAFI	CTTAAG	1 cut(s)	740
BstAUI	TGTACA	1 cut(s)	307
BstBI	TTCGAA	1 cut(s)	822
BstDEI	CTNAG	4 cut(s)	78, 89, 135, 165
BstKTI	GATC	2 cut(s)	106, 338
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	2 cut(s)	103, 335
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	83
BstSFI	CTRYAG	2 cut(s)	270, 552
BstX2I	RGATCY	2 cut(s)	103, 335
BstYI	RGATCY	2 cut(s)	103, 335
BsuRI	GGCC	5 cut(s)	30, 147, 158, 522, 544
Cfr13I	GGNCC	3 cut(s)	146, 520, 542
CseI	GACGC	3 cut(s)	106, 134, 566
Csp6I	GTAC	7 cut(s)	46, 208, 308, 416, 487, 761, 804
CviAII	CATG	2 cut(s)	535, 607
CviQI	GTAC	7 cut(s)	46, 208, 308, 416, 487, 761, 804
DdeI	CTNAG	4 cut(s)	78, 89, 135, 165
DpnI	GATC	2 cut(s)	105, 337
DpnII	GATC	2 cut(s)	103, 335
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	4 cut(s)	621, 628, 665, 696
EarI	CTCTTC	4 cut(s)	621, 628, 665, 696
Eco130I	CCWWGG	1 cut(s)	478
Eco31I	GGTCTC	1 cut(s)	66
Eco88I	CYCGRG	1 cut(s)	440
EcoO109I	RGGNCCY	1 cut(s)	520
EcoRI	GAATTC	1 cut(s)	818
EcoT14I	CCWWGG	1 cut(s)	478
ErhI	CCWWGG	1 cut(s)	478
FaeI	CATG	2 cut(s)	538, 610
FaiI	YATR	9 cut(s)	237, 500, 536, 608, 617, 666, 699, 792, 798
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FatI	CATG	2 cut(s)	534, 606
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	25, 28
Fsp4HI	GCNGC	2 cut(s)	25, 28
GluI	GCNGC	2 cut(s)	25, 28
HaeIII	GGCC	5 cut(s)	30, 147, 158, 522, 544
HapII	CCGG	2 cut(s)	85, 101
HgaI	GACGC	3 cut(s)	106, 134, 566
Hin1I	GRCGYC	3 cut(s)	98, 126, 558
Hin1II	CATG	2 cut(s)	538, 610
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	3 cut(s)	240, 299, 731
HpaII	CCGG	2 cut(s)	85, 101
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	5 cut(s)	96, 124, 640, 842, 854
Hpy188I	TCNGA	4 cut(s)	245, 258, 391, 408
Hpy188III	TCNNGA	3 cut(s)	110, 175, 691
Hpy8I	GTNNAC	5 cut(s)	96, 124, 640, 842, 854
Hpy99I	CGWCG	2 cut(s)	23, 128
HpyAV	CCTTC	3 cut(s)	187, 532, 697
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	7 cut(s)	229, 272, 365, 430, 460, 554, 571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	4 cut(s)	78, 89, 135, 165
HpySE526I	ACGT	1 cut(s)	642
Hsp92I	GRCGYC	3 cut(s)	98, 126, 558
Hsp92II	CATG	2 cut(s)	538, 610
Kzo9I	GATC	2 cut(s)	103, 335
LguI	GCTCTTC	1 cut(s)	665
LpnPI	CCDG	6 cut(s)	82, 98, 114, 162, 318, 704
LweI	GCATC	1 cut(s)	821
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	2 cut(s)	105, 337
MboI	GATC	2 cut(s)	103, 335
MboII	GAAGA	7 cut(s)	98, 635, 638, 645, 682, 713, 731
MfeI	CAATTG	1 cut(s)	572
MflI	RGATCY	2 cut(s)	103, 335
MluCI	AATT	5 cut(s)	265, 378, 572, 586, 818
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	9 cut(s)	84, 171, 361, 385, 436, 533, 652, 697, 744
MseI	TTAA	2 cut(s)	741, 773
MslI	CAYNNNNRTG	1 cut(s)	566
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	2 cut(s)	85, 101
MspR9I	CCNGG	1 cut(s)	85
MunI	CAATTG	1 cut(s)	572
MwoI	GCNNNNNNNGC	1 cut(s)	36
NciI	CCSGG	1 cut(s)	85
NdeII	GATC	2 cut(s)	103, 335
NlaIII	CATG	2 cut(s)	538, 610
NlaIV	GGNNCC	2 cut(s)	543, 757
NmuCI	GTSAC	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	822
OliI	CACNNNNGTG	1 cut(s)	566
PaeR7I	CTCGAG	1 cut(s)	440
PciSI	GCTCTTC	1 cut(s)	665
PcsI	WCGNNNNNNNCGW	1 cut(s)	835
PfeI	GAWTC	2 cut(s)	299, 731
Pfl23II	CGTACG	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	26, 29
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PsiI	TTATAA	1 cut(s)	666
PspLI	CGTACG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	543, 757
PspPI	GGNCC	3 cut(s)	146, 520, 542
PspXI	VCTCGAGB	1 cut(s)	440
PstI	CTGCAG	2 cut(s)	274, 556
PsuI	RGATCY	2 cut(s)	103, 335
PsyI	GACNNNGTC	1 cut(s)	128
RsaI	GTAC	7 cut(s)	47, 209, 309, 417, 488, 762, 805
RsaNI	GTAC	7 cut(s)	46, 208, 308, 416, 487, 761, 804
RseI	CAYNNNNRTG	1 cut(s)	566
SalI	GTCGAC	1 cut(s)	122
SapI	GCTCTTC	1 cut(s)	665
SaqAI	TTAA	2 cut(s)	741, 773
SatI	GCNGC	2 cut(s)	25, 28
Sau3AI	GATC	2 cut(s)	103, 335
Sau96I	GGNCC	3 cut(s)	146, 520, 542
ScaI	AGTACT	1 cut(s)	488
SchI	GAGTC	1 cut(s)	234
ScrFI	CCNGG	1 cut(s)	85
SfaNI	GCATC	1 cut(s)	821
SfcI	CTRYAG	2 cut(s)	270, 552
Sfr274I	CTCGAG	1 cut(s)	440
SfuI	TTCGAA	1 cut(s)	822
SlaI	CTCGAG	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	5 cut(s)	175, 352, 398, 440, 740
SmoI	CTYRAG	5 cut(s)	175, 352, 398, 440, 740
Sse9I	AATT	5 cut(s)	265, 378, 572, 586, 818
SsiI	CCGC	2 cut(s)	24, 27
SspI	AATATT	1 cut(s)	712
StyD4I	CCNGG	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	478
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	3 cut(s)	123, 441, 822
TasI	AATT	5 cut(s)	265, 378, 572, 586, 818
TatI	WGTACW	3 cut(s)	307, 415, 486
TauI	GCSGC	2 cut(s)	27, 30
TfiI	GAWTC	2 cut(s)	299, 731
Tru1I	TTAA	2 cut(s)	741, 773
Tru9I	TTAA	2 cut(s)	741, 773
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
TspDTI	ATGAA	6 cut(s)	23, 291, 551, 595, 668, 714
TspGWI	ACGGA	2 cut(s)	33, 748
Tth111I	GACNNNGTC	1 cut(s)	128
Vha464I	CTTAAG	1 cut(s)	740
XapI	RAATTY	2 cut(s)	265, 818
XhoI	CTCGAG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.