Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0010064

Physical Location & Seq

Genomic Coordinates Forward (+)

10922829 .. 10923418

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0138400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTCGAACTCTTTACTCTCTTTCTTCAATAAGAAGTCATTAGACGACACAATGAAACTCAGGGAGCCTGGTGTCAAAAATGCTATATATAGAGATGAGTTGAGTAAGAAGCCAATTTCAAATTACAGGCAAAAGATTAACTGCAGTTACTTGGAAAGTTCGGAACCACTGCTCAGCAAGAGGGAAGAAAAAGAAGATGGGAAAGGAGTAGTGGTGATGAGAGTAAAAGTTAAGATGACAAAGCAAGAAGCAGCTCGAATGCTTTCCAGGTGCAAAAATGGAGGGGTTCTTGAATTCAAGGATGTGGCAAATGAGCTCACAAAGATTCCAATCAATCGTGTTACCCTTGATCAGTCCCCTGCTTGTACTAGCAGTGCTGCAGGTCCGGTTTTGAAGAGCATCCCTGAAGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

138

Amino Acids

15.52

Weight (kDa)

9.36

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7890	PF25418	72 - 116	4.2e-27	Domain of unknown function (DUF7890)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45580 AT5G45580 AT5G45580
fragaria_vesca	FvH4_5g23660
malus_domestica	MD00G1000500.v1.1 MD06G1022600.v1.1
prunus_persica	Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1
pyrus_communis	pycom16g25380
rosa_chinensis	RchiOBHm_Chr7g0212961
rosa_laevigata	RLG00000002842
rosa_multiflora	Rmu_sc0001684.1_g000008 Rmu_sc0037369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246380
rosa_rugosa	Rorug07G0138400
rosa_samantha	Rh7AG269700 Rh7BG265100 Rh7CG288900 Rh7DG277800
rosa_wichuraiana	Rw7G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	371
AcsI	RAATTY	1 cut(s)	293
AfaI	GTAC	1 cut(s)	367
AgsI	TTSAA	5 cut(s)	28, 120, 293, 298, 394
AjnI	CCWGG	2 cut(s)	67, 266
AluBI	AGCT	2 cut(s)	254, 316
AluI	AGCT	2 cut(s)	254, 316
Alw21I	GWGCWC	1 cut(s)	318
ApeKI	GCWGC	2 cut(s)	251, 377
ApoI	RAATTY	1 cut(s)	293
Asp700I	GAANNNNTTC	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	318
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	263, 364
BccI	CCATC	1 cut(s)	191
BciT130I	CCWGG	2 cut(s)	69, 268
BclI	TGATCA	1 cut(s)	349
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	2 cut(s)	142, 378
BfuAI	ACCTGC	1 cut(s)	371
BisI	GCNGC	2 cut(s)	252, 378
BlpI	GCTNAGC	1 cut(s)	173
BlsI	GCNGC	2 cut(s)	253, 379
Bme1390I	CCNGG	2 cut(s)	69, 268
Bme18I	GGWCC	1 cut(s)	383
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	66, 165
BmrFI	CCNGG	2 cut(s)	69, 268
BmsI	GCATC	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	173
BsaBI	GATNNNNATC	1 cut(s)	329
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bse8I	GATNNNNATC	1 cut(s)	329
BseBI	CCWGG	2 cut(s)	69, 268
BseGI	GGATG	2 cut(s)	307, 399
BseJI	GATNNNNATC	1 cut(s)	329
BseMII	CTCAG	2 cut(s)	73, 187
BseXI	GCAGC	2 cut(s)	263, 364
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	386
BslFI	GGGAC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	340
BsmI	GAATGC	1 cut(s)	264
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp143I	GATC	1 cut(s)	349
Bsp1720I	GCTNAGC	1 cut(s)	173
BspCNI	CTCAG	2 cut(s)	72, 186
BspLI	GGNNCC	2 cut(s)	66, 165
BspMAI	CTGCAG	2 cut(s)	146, 382
BspMI	ACCTGC	1 cut(s)	371
BspQI	GCTCTTC	1 cut(s)	389
BssMI	GATC	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	69, 268
Bst6I	CTCTTC	1 cut(s)	389
BstDEI	CTNAG	2 cut(s)	59, 173
BstF5I	GGATG	2 cut(s)	307, 399
BstKTI	GATC	1 cut(s)	352
BstMBI	GATC	1 cut(s)	349
BstNI	CCWGG	2 cut(s)	69, 268
BstSCI	CCNGG	2 cut(s)	67, 266
BstSFI	CTRYAG	2 cut(s)	142, 378
BstV1I	GCAGC	2 cut(s)	263, 364
BtsCI	GGATG	2 cut(s)	307, 399
BtsI	GCAGTG	2 cut(s)	167, 379
BtsIMutI	CAGTG	2 cut(s)	167, 379
BveI	ACCTGC	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	1 cut(s)	366
CviJI	RGCY	4 cut(s)	67, 112, 254, 316
CviKI_1	RGCY	4 cut(s)	67, 112, 254, 316
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	2 cut(s)	59, 173
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
Eam1104I	CTCTTC	1 cut(s)	389
EarI	CTCTTC	1 cut(s)	389
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	383
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	293
EcoRII	CCWGG	2 cut(s)	67, 266
EcoT38I	GRGCYC	1 cut(s)	318
FaiI	YATR	3 cut(s)	86, 88, 90
FaqI	GGGAC	1 cut(s)	340
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	2 cut(s)	252, 378
FokI	GGATG	2 cut(s)	314, 386
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	2 cut(s)	252, 378
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	2 cut(s)	252, 378
HapII	CCGG	1 cut(s)	386
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	386
HphI	GGTGA	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	1 cut(s)	290
HpyCH4V	TGCA	3 cut(s)	144, 273, 380
HpyF3I	CTNAG	2 cut(s)	59, 173
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	1 cut(s)	349
LguI	GCTCTTC	1 cut(s)	389
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	9 cut(s)	46, 54, 81, 112, 253, 280, 366, 372, 399
Lsp1109I	GCAGC	2 cut(s)	263, 364
LweI	GCATC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	146, 340
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	4 cut(s)	16, 197, 206, 406
MhlI	GDGCHC	1 cut(s)	318
MluCI	AATT	3 cut(s)	114, 121, 293
MnlI	CCTC	2 cut(s)	174, 275
MroXI	GAANNNNTTC	1 cut(s)	262
MseI	TTAA	2 cut(s)	138, 231
MspI	CCGG	1 cut(s)	386
MspR9I	CCNGG	2 cut(s)	69, 268
Mva1269I	GAATGC	1 cut(s)	264
MvaI	CCWGG	2 cut(s)	69, 268
NdeII	GATC	1 cut(s)	349
NlaIV	GGNNCC	2 cut(s)	66, 165
PciSI	GCTCTTC	1 cut(s)	389
PctI	GAATGC	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	253, 379
Psp124BI	GAGCTC	1 cut(s)	318
Psp6I	CCWGG	2 cut(s)	67, 266
PspGI	CCWGG	2 cut(s)	67, 266
PspN4I	GGNNCC	2 cut(s)	66, 165
PspPI	GGNCC	1 cut(s)	383
PstI	CTGCAG	2 cut(s)	146, 382
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	138, 231
SatI	GCNGC	2 cut(s)	252, 378
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	69, 268
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	4 cut(s)	256, 272, 318, 385
SfaNI	GCATC	1 cut(s)	408
SfcI	CTRYAG	2 cut(s)	142, 378
SinI	GGWCC	1 cut(s)	383
Sse9I	AATT	3 cut(s)	114, 121, 293
SspI	AATATT	1 cut(s)	413
SspMI	CTAG	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	2 cut(s)	67, 266
TaqI	TCGA	2 cut(s)	5, 256
TasI	AATT	3 cut(s)	114, 121, 293
TatI	WGTACW	1 cut(s)	365
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	2 cut(s)	138, 231
Tru9I	TTAA	2 cut(s)	138, 231
TscAI	CASTG	2 cut(s)	174, 379
TseI	GCWGC	2 cut(s)	251, 377
TspDTI	ATGAA	1 cut(s)	68
TspRI	CASTG	2 cut(s)	174, 379
VpaK11BI	GGWCC	1 cut(s)	383
XapI	RAATTY	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	262
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.