Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0010064

Physical Location & Seq

Genomic Coordinates Forward (+)

29392208 .. 29395105

Gene Structure 2898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG288900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGCTTGAAGGGATTGACATTGTACCATTTGAAAAGCCATTTGCAGAAGTATAGACTCGGACAGCAATCTCGGAAACAAAATTCTGCAGAACAAGGCAGAGAGAACAATGGGGATTCATTTGTACATTTCAGTAATCATCATTCCACAGGGTCTACCACCAAATCCTCAAGAGGTAATGCAGAACAAGGAACAATTCCGCTTTCGGAGGAACTTAAGTGTCAGATTGAAGTACAGAACAGATTGCAAGAGCAACTCGAGGTTCAAAAGAAGCTGCAAATGAGAATAGAAGCCCAAGGGAAGTACTTACAAACTATATTAGAGAAAGCTCAAAAGGGCCTCTCTATTGACATGAAGGGGCCGATTACTGCAGAAGCCACAAGAGCGCAATTGACAGACTTCAATTTGGCTCTATCAAACTTCATGGAGAATATGAGCGAAGAAGAGAGAAGAGTAAACATAATAGAGATGAATGAGGCTTATAAGAAGAGCAATGGTTCAACTTTCCAGATTTATGAAGAGGGGAATATTGGAGAAGAAAATAAAGATTCAAAGCTAAAGGTTGAGAGGGGTTCCATACATTTTGACTTAAATACTAAAGGTAGTTATGATTATGTTGGTACAAATGGAACTGAATTGGAACCACGATGCTTTCGTTTACAAGATAGTTCACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0010087 GO:0010088 GO:0010089 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

225

Amino Acids

25.57

Weight (kDa)

6.62

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_CC_LHEQLE	PF14379	67 - 112	2e-21	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010064)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G45580 AT5G45580 AT5G45580
fragaria_vesca	FvH4_5g23660
malus_domestica	MD00G1000500.v1.1 MD06G1022600.v1.1
prunus_persica	Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1 Prupe.5G023700_v2.0.a1
pyrus_communis	pycom16g25380
rosa_chinensis	RchiOBHm_Chr7g0212961
rosa_laevigata	RLG00000002842
rosa_multiflora	Rmu_sc0001684.1_g000008 Rmu_sc0037369.1_g000001
rosa_roxburghii	Rroxscaffold_3G00246380
rosa_rugosa	Rorug07G0138400
rosa_samantha	Rh7AG269700 Rh7BG265100 Rh7CG288900 Rh7DG277800
rosa_wichuraiana	Rw7G023430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
AccI	GTMKAC	1 cut(s)	155
AciI	CCGC	1 cut(s)	200
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	5 cut(s)	26, 126, 234, 305, 622
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	7 cut(s)	10, 34, 230, 266, 403, 501, 552
AluBI	AGCT	3 cut(s)	274, 329, 556
AluI	AGCT	3 cut(s)	274, 329, 556
Ama87I	CYCGRG	1 cut(s)	257
AoxI	GGCC	2 cut(s)	337, 359
ApeKI	GCWGC	1 cut(s)	274
ApoI	RAATTY	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	388
AspS9I	GGNCC	2 cut(s)	337, 359
AvaI	CYCGRG	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	261
BfmI	CTRYAG	2 cut(s)	87, 369
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	275
BlsI	GCNGC	1 cut(s)	276
BmcAI	AGTACT	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	337, 359
BmiI	GGNNCC	3 cut(s)	360, 574, 642
BmsI	GCATC	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	499
BseDI	CCNNGG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	499
BseXI	GCAGC	1 cut(s)	261
BshFI	GGCC	2 cut(s)	339, 361
BsiHKCI	CYCGRG	1 cut(s)	257
BsnI	GGCC	2 cut(s)	339, 361
BsoBI	CYCGRG	1 cut(s)	257
Bsp1407I	TGTACA	1 cut(s)	124
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	2 cut(s)	339, 361
BspLI	GGNNCC	3 cut(s)	360, 574, 642
BspMAI	CTGCAG	2 cut(s)	91, 373
BspQI	GCTCTTC	1 cut(s)	482
BspTI	CTTAAG	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	499
BsrGI	TGTACA	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	295
BssT1I	CCWWGG	1 cut(s)	295
Bst6I	CTCTTC	4 cut(s)	438, 445, 482, 513
BstAFI	CTTAAG	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	1 cut(s)	383
BstSFI	CTRYAG	2 cut(s)	87, 369
BstV1I	GCAGC	1 cut(s)	261
BsuRI	GGCC	2 cut(s)	339, 361
CfoI	GCGC	1 cut(s)	388
Cfr13I	GGNCC	2 cut(s)	337, 359
Csp6I	GTAC	5 cut(s)	25, 125, 233, 304, 621
CviAII	CATG	2 cut(s)	352, 424
CviQI	GTAC	5 cut(s)	25, 125, 233, 304, 621
Eam1104I	CTCTTC	4 cut(s)	438, 445, 482, 513
EarI	CTCTTC	4 cut(s)	438, 445, 482, 513
Eco130I	CCWWGG	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	295
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	2 cut(s)	355, 427
FatI	CATG	2 cut(s)	351, 423
FblI	GTMKAC	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	275
Fsp4HI	GCNGC	1 cut(s)	275
GlaI	GCGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	275
HaeIII	GGCC	2 cut(s)	339, 361
HhaI	GCGC	1 cut(s)	388
Hin1II	CATG	2 cut(s)	355, 427
Hin6I	GCGC	1 cut(s)	386
HinP1I	GCGC	1 cut(s)	386
HinfI	GANTC	3 cut(s)	57, 116, 548
Hpy166II	GTNNAC	4 cut(s)	156, 457, 659, 671
Hpy188I	TCNGA	4 cut(s)	62, 75, 208, 225
Hpy188III	TCNNGA	2 cut(s)	171, 508
Hpy8I	GTNNAC	4 cut(s)	156, 457, 659, 671
HpyAV	CCTTC	2 cut(s)	4, 349
HpyCH4V	TGCA	6 cut(s)	46, 89, 182, 247, 277, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
Hsp92II	CATG	2 cut(s)	355, 427
HspAI	GCGC	1 cut(s)	386
LguI	GCTCTTC	1 cut(s)	482
LpnPI	CCDG	2 cut(s)	135, 521
Lsp1109I	GCAGC	1 cut(s)	261
LweI	GCATC	1 cut(s)	638
MboII	GAAGA	6 cut(s)	452, 455, 462, 499, 530, 548
MfeI	CAATTG	1 cut(s)	389
MluCI	AATT	5 cut(s)	82, 195, 389, 403, 635
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	8 cut(s)	167, 178, 202, 253, 350, 469, 514, 561
MseI	TTAA	2 cut(s)	216, 590
MspCI	CTTAAG	1 cut(s)	215
MunI	CAATTG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	383
NlaIII	CATG	2 cut(s)	355, 427
NlaIV	GGNNCC	3 cut(s)	360, 574, 642
PaeR7I	CTCGAG	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	482
PcsI	WCGNNNNNNNCGW	1 cut(s)	652
PfeI	GAWTC	2 cut(s)	116, 548
PkrI	GCNGC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	483
PspN4I	GGNNCC	3 cut(s)	360, 574, 642
PspPI	GGNCC	2 cut(s)	337, 359
PspXI	VCTCGAGB	1 cut(s)	257
PstI	CTGCAG	2 cut(s)	91, 373
RsaI	GTAC	5 cut(s)	26, 126, 234, 305, 622
RsaNI	GTAC	5 cut(s)	25, 125, 233, 304, 621
SapI	GCTCTTC	1 cut(s)	482
SaqAI	TTAA	2 cut(s)	216, 590
SatI	GCNGC	1 cut(s)	275
Sau96I	GGNCC	2 cut(s)	337, 359
ScaI	AGTACT	1 cut(s)	305
SchI	GAGTC	1 cut(s)	51
SetI	ASST	7 cut(s)	178, 264, 276, 331, 558, 564, 604
SfaNI	GCATC	1 cut(s)	638
SfcI	CTRYAG	2 cut(s)	87, 369
Sfr274I	CTCGAG	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	257
SmlI	CTYRAG	3 cut(s)	169, 215, 257
SmoI	CTYRAG	3 cut(s)	169, 215, 257
Sse9I	AATT	5 cut(s)	82, 195, 389, 403, 635
SsiI	CCGC	1 cut(s)	200
SspI	AATATT	1 cut(s)	529
StyI	CCWWGG	1 cut(s)	295
TaqI	TCGA	1 cut(s)	258
TasI	AATT	5 cut(s)	82, 195, 389, 403, 635
TatI	WGTACW	3 cut(s)	124, 232, 303
TfiI	GAWTC	2 cut(s)	116, 548
Tru1I	TTAA	2 cut(s)	216, 590
Tru9I	TTAA	2 cut(s)	216, 590
TseI	GCWGC	1 cut(s)	274
TspDTI	ATGAA	5 cut(s)	108, 368, 412, 485, 531
Vha464I	CTTAAG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	155
ZrmI	AGTACT	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.