Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013980

Physical Location & Seq

Genomic Coordinates Forward (+)

18693485 .. 18694129

Gene Structure 645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGATTAATGTTGATGAAGAAGCTGGGATCATCAAAGAAGAAACAGTTCCACTCCTGGATGATCAAAATCGAAATCGGGACTTACCTGACATAGAAAGGAACACTATGATGCAAAAGGCAATAGGTAAGACTTTTCAGACAACAGCTAATCTAGCTAATCTTTTACCTACGGGGACAGTTCTTGCATTCCAGATTTTATCGCCAATTTGCACAAACGTTGGACGCTGCGATCTAACTAGCAGATTCATGACTGCGTTGCTAGTTTCCATCTGCGGATTCTCTTGTTTCATACTTAGCTTCACAGATTCTTACAAGGATTTGAATGGTAGTGTCTGCTATGGATTTGCAACAATCCATGGTTTCTGGATCATTGATGGCTCAGCTACTCTTCCTCAAGAACTTTCCAAAAGCTACAAACTACGGTTTATCGACTTCGTACATGCCATTATGTCGTTTCTGGTTTTTGGAGCCGTGGTTTTGTTTGATCAGAATGTGGTTAACTGTTTCTATCCCGAACCATCAGCTGAAGTAGTGGAGCTTCTCACAACTTTGCCTGTAGCTGTAGGAGTCTTCTGCAGTATGGTGTTCGCTAAATTTCCAACTACACGCCACGGTATTGGTTTTCCCCTCTCTGCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009705 GO:0009838 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048731 GO:0048856 GO:0071840 GO:0090693 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

214

Amino Acids

23.63

Weight (kDa)

5.01

Isoelectric Point (pI)

36.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	48 - 209	3.5e-69	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18425 AT5G46090
fragaria_vesca	FvH4_3g08540
malus_domestica	MD05G1310000.v1.1 MD10G1288800.v1.1
prunus_persica	Prupe.4G052900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0009301
rosa_laevigata	RLG00000031646
rosa_multiflora	Rmu_sc0006233.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066800 Rroxscaffold_1G00067500
rosa_rugosa	Rorug04G0441700
rosa_samantha	Rh5AG072100 Rh5BG068600 Rh5CG081000 Rh5DG068800
rosa_wichuraiana	Rw5G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	276
AclI	AACGTT	1 cut(s)	219
AclWI	GGATC	2 cut(s)	38, 377
AcsI	RAATTY	1 cut(s)	596
AcuI	CTGAAG	1 cut(s)	549
AfaI	GTAC	1 cut(s)	441
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	9 cut(s)	26, 149, 158, 300, 386, 414, 527, 541, 563
AluI	AGCT	9 cut(s)	26, 149, 158, 300, 386, 414, 527, 541, 563
AlwI	GGATC	2 cut(s)	38, 377
ApeKI	GCWGC	1 cut(s)	228
ApoI	RAATTY	1 cut(s)	596
AseI	ATTAAT	1 cut(s)	9
Asp700I	GAANNNNTTC	1 cut(s)	48
BarI	GAAGNNNNNNTAC	2 cut(s)	525, 557
BbsI	GAAGAC	1 cut(s)	565
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	3 cut(s)	278, 371, 529
BceAI	ACGGC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	59
BclI	TGATCA	2 cut(s)	64, 487
BfaI	CTAG	3 cut(s)	155, 240, 263
BfmI	CTRYAG	3 cut(s)	558, 564, 577
BisI	GCNGC	1 cut(s)	229
BlpI	GCTNAGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	472
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	565
Bpu1102I	GCTNAGC	1 cut(s)	382
BpuEI	CTTGAG	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	3 cut(s)	358, 474, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	3 cut(s)	358, 474, 613
BseGI	GGATG	1 cut(s)	67
BseJI	GATNNNNATC	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	396
BseXI	GCAGC	1 cut(s)	215
BseYI	CCCAGC	1 cut(s)	26
BslFI	GGGAC	2 cut(s)	95, 190
BsmFI	GGGAC	2 cut(s)	95, 190
BsmI	GAATGC	1 cut(s)	188
Bsp143I	GATC	5 cut(s)	30, 64, 232, 369, 487
Bsp1720I	GCTNAGC	1 cut(s)	382
Bsp19I	CCATGG	1 cut(s)	358
BspACI	CCGC	1 cut(s)	276
BspCNI	CTCAG	1 cut(s)	395
BspHI	TCATGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	472
BspMAI	CTGCAG	1 cut(s)	581
BspPI	GGATC	2 cut(s)	38, 377
BssECI	CCNNGG	3 cut(s)	358, 474, 613
BssMI	GATC	5 cut(s)	30, 64, 232, 369, 487
BssT1I	CCWWGG	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	5 cut(s)	49, 181, 426, 506, 617
Bst6I	CTCTTC	1 cut(s)	396
BstDEI	CTNAG	2 cut(s)	296, 382
BstDSI	CCRYGG	3 cut(s)	358, 474, 613
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	5 cut(s)	33, 67, 235, 372, 490
BstMBI	GATC	5 cut(s)	30, 64, 232, 369, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	3 cut(s)	558, 564, 577
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	565
BstXI	CCANNNNNNTGG	1 cut(s)	620
BtgI	CCRYGG	3 cut(s)	358, 474, 613
BtsCI	GGATG	1 cut(s)	67
CciI	TCATGA	1 cut(s)	249
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	440
CviAII	CATG	3 cut(s)	250, 359, 443
CviQI	GTAC	1 cut(s)	440
DdeI	CTNAG	2 cut(s)	296, 382
DpnI	GATC	5 cut(s)	32, 66, 234, 371, 489
DpnII	GATC	5 cut(s)	30, 64, 232, 369, 487
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Eco130I	CCWWGG	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	358
FaeI	CATG	3 cut(s)	253, 362, 446
FaiI	YATR	9 cut(s)	95, 110, 251, 293, 342, 360, 444, 452, 584
FaqI	GGGAC	2 cut(s)	95, 190
FatI	CATG	3 cut(s)	249, 358, 442
FbaI	TGATCA	2 cut(s)	64, 487
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	3 cut(s)	155, 240, 263
GluI	GCNGC	1 cut(s)	229
GsaI	CCCAGC	1 cut(s)	30
HgaI	GACGC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	253, 362, 446
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HinfI	GANTC	4 cut(s)	246, 279, 308, 570
HpaI	GTTAAC	1 cut(s)	502
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	2 cut(s)	141, 492
Hpy188III	TCNNGA	6 cut(s)	80, 193, 250, 367, 398, 515
Hpy8I	GTNNAC	1 cut(s)	502
HpyCH4III	ACNGT	5 cut(s)	49, 181, 426, 506, 617
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	5 cut(s)	115, 188, 213, 350, 579
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	2 cut(s)	296, 382
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	3 cut(s)	253, 362, 446
Ksp22I	TGATCA	2 cut(s)	64, 487
KspAI	GTTAAC	1 cut(s)	502
Kzo9I	GATC	5 cut(s)	30, 64, 232, 369, 487
LmnI	GCTCC	2 cut(s)	470, 538
LpnPI	CCDG	8 cut(s)	12, 44, 71, 102, 206, 352, 446, 570
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	3 cut(s)	155, 240, 263
MaeII	ACGT	1 cut(s)	219
MalI	GATC	5 cut(s)	32, 66, 234, 371, 489
MboI	GATC	5 cut(s)	30, 64, 232, 369, 487
MboII	GAAGA	4 cut(s)	32, 53, 383, 565
MluCI	AATT	2 cut(s)	207, 596
MlyI	GAGTC	1 cut(s)	579
MmeI	TCCRAC	2 cut(s)	202, 626
MnlI	CCTC	2 cut(s)	405, 641
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	2 cut(s)	9, 501
MslI	CAYNNNNRTG	1 cut(s)	110
MspA1I	CMGCKG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	59
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	358
NdeII	GATC	5 cut(s)	30, 64, 232, 369, 487
NlaIII	CATG	3 cut(s)	253, 362, 446
NlaIV	GGNNCC	1 cut(s)	472
NspI	RCATGY	1 cut(s)	446
PagI	TCATGA	1 cut(s)	249
PctI	GAATGC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	3 cut(s)	246, 279, 308
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	578
PpsI	GAGTC	1 cut(s)	578
PshBI	ATTAAT	1 cut(s)	9
Psp1406I	AACGTT	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	26
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	472
PstI	CTGCAG	1 cut(s)	581
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	1 cut(s)	441
RsaNI	GTAC	1 cut(s)	440
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	9, 501
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	5 cut(s)	30, 64, 232, 369, 487
SchI	GAGTC	1 cut(s)	579
ScrFI	CCNGG	1 cut(s)	59
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	3 cut(s)	558, 564, 577
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	396
SmoI	CTYRAG	1 cut(s)	396
Sse9I	AATT	2 cut(s)	207, 596
SsiI	CCGC	1 cut(s)	276
SspMI	CTAG	3 cut(s)	155, 240, 263
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	358
TaaI	ACNGT	5 cut(s)	49, 181, 426, 506, 617
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	2 cut(s)	73, 432
TasI	AATT	2 cut(s)	207, 596
TfiI	GAWTC	3 cut(s)	246, 279, 308
Tru1I	TTAA	2 cut(s)	9, 501
Tru9I	TTAA	2 cut(s)	9, 501
TseI	GCWGC	1 cut(s)	228
TspDTI	ATGAA	3 cut(s)	33, 238, 280
VspI	ATTAAT	1 cut(s)	9
XapI	RAATTY	1 cut(s)	596
XceI	RCATGY	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	3 cut(s)	155, 240, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.