Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013980

Physical Location & Seq

Genomic Coordinates Reverse (-)

7004040 .. 7004678

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031646

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAGATCAAGATAGGATCAAAGGAATCCAAGCATGATGGTGAGCAAAAACTTCCCCTCTTGCATGATACACCAGCTCCGGAAATAGATGAGAAAAGAACGTTGATACAGAGAGCCATCAACCAGACGTTTCAGAGCACAGCTCATTTGGCTAATCTTTTACCTACTGGGACAGTTCTTGCATTTCAACTTCTGGCACCTATATTTACGAACCAAGGCAACTGCGACTCGGTCAGCAGGGCCATGACTGCTGGCCTTGTAGGCCTCTGTGGCGCTTCGTGTTTTCTACTGAGTTTCACTGACAGCTATAGGGACAAGAAGGGAAATGTTTGCTATGGATTTGCCACATTCAAAGGCTTATGGGTCATCGATGGATCAGCCACCCTTGCACCAGATGTTGCAGCAAATTTCAAACTGAAGTTTATAGATTTCCTCCACGCCTTCATGTCCATACTTGTATTTGGAGCTGTTGCGTTATTTGATCAGAATGTAGTGAATTGCTTCTACCCAACGCCGTCGGATAAGGCTCAGGAGGTTCTCACATCATTGCCAGTTGCCATTGGTGTCTTCTGCAGTATGTTGTTTGTTGTGTTTCCAACCAAGCGCCATGGAATTAGCTTCCCCCTATCTGCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009705 GO:0009838 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048731 GO:0048856 GO:0071840 GO:0090693 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

213

Amino Acids

23.01

Weight (kDa)

6.94

Isoelectric Point (pI)

29.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	45 - 207	6.6e-73	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18425 AT5G46090
fragaria_vesca	FvH4_3g08540
malus_domestica	MD05G1310000.v1.1 MD10G1288800.v1.1
prunus_persica	Prupe.4G052900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0009301
rosa_laevigata	RLG00000031646
rosa_multiflora	Rmu_sc0006233.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066800 Rroxscaffold_1G00067500
rosa_rugosa	Rorug04G0441700
rosa_samantha	Rh5AG072100 Rh5BG068600 Rh5CG081000 Rh5DG068800
rosa_wichuraiana	Rw5G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	196
AccIII	TCCGGA	1 cut(s)	79
AclI	AACGTT	1 cut(s)	101
AclWI	GGATC	2 cut(s)	25, 382
AcsI	RAATTY	1 cut(s)	406
AcuI	CTGAAG	1 cut(s)	437
AgsI	TTSAA	3 cut(s)	188, 352, 412
AluBI	AGCT	6 cut(s)	77, 143, 306, 467, 618, 636
AluI	AGCT	6 cut(s)	77, 143, 306, 467, 618, 636
Alw21I	GWGCWC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	25, 382
Aor13HI	TCCGGA	1 cut(s)	79
AoxI	GGCC	3 cut(s)	240, 253, 262
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	406
Asp700I	GAANNNNTTC	1 cut(s)	500
AspLEI	GCGC	2 cut(s)	275, 606
AspS9I	GGNCC	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	53
BanI	GGYRCC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	413
BccI	CCATC	3 cut(s)	32, 125, 365
BceAI	ACGGC	1 cut(s)	499
BclI	TGATCA	1 cut(s)	481
BfmI	CTRYAG	2 cut(s)	307, 571
BfoI	RGCGCY	2 cut(s)	276, 607
BglI	GCCNNNNNGGC	2 cut(s)	261, 270
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	559
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
Bpu10I	CCTNAGC	1 cut(s)	528
Bsa29I	ATCGAT	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	214, 607
BsaWI	WCCGGW	1 cut(s)	79
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bse1I	ACTGG	2 cut(s)	172, 551
Bse3DI	GCAATG	1 cut(s)	545
BseAI	TCCGGA	1 cut(s)	79
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	2 cut(s)	214, 607
BseMI	GCAATG	1 cut(s)	545
BseMII	CTCAG	2 cut(s)	281, 542
BseNI	ACTGG	2 cut(s)	172, 551
BseXI	GCAGC	1 cut(s)	413
BshFI	GGCC	3 cut(s)	242, 255, 264
BshNI	GGYRCC	1 cut(s)	196
BshVI	ATCGAT	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	2 cut(s)	184, 326
BsmFI	GGGAC	2 cut(s)	184, 326
BsnI	GGCC	3 cut(s)	242, 255, 264
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp13I	TCCGGA	1 cut(s)	79
Bsp143I	GATC	4 cut(s)	6, 17, 374, 481
Bsp19I	CCATGG	1 cut(s)	607
BspANI	GGCC	3 cut(s)	242, 255, 264
BspCNI	CTCAG	2 cut(s)	282, 541
BspDI	ATCGAT	1 cut(s)	369
BspEI	TCCGGA	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	198
BspMAI	CTGCAG	1 cut(s)	575
BspPI	GGATC	2 cut(s)	25, 382
BspT107I	GGYRCC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	172, 551
BssECI	CCNNGG	2 cut(s)	214, 607
BssMI	GATC	4 cut(s)	6, 17, 374, 481
BssT1I	CCWWGG	2 cut(s)	214, 607
Bst4CI	ACNGT	1 cut(s)	175
BstC8I	GCNNGC	2 cut(s)	253, 634
BstDEI	CTNAG	2 cut(s)	290, 528
BstDSI	CCRYGG	1 cut(s)	607
BstH2I	RGCGCY	2 cut(s)	276, 607
BstHHI	GCGC	2 cut(s)	275, 606
BstKTI	GATC	4 cut(s)	9, 20, 377, 484
BstMBI	GATC	4 cut(s)	6, 17, 374, 481
BstMWI	GCNNNNNNNGC	5 cut(s)	149, 248, 261, 270, 386
BstSFI	CTRYAG	2 cut(s)	307, 571
BstV1I	GCAGC	1 cut(s)	413
BstV2I	GAAGAC	1 cut(s)	559
Bsu15I	ATCGAT	1 cut(s)	369
BsuRI	GGCC	3 cut(s)	242, 255, 264
BsuTUI	ATCGAT	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	607
BtsIMutI	CAGTG	1 cut(s)	297
Cac8I	GCNNGC	2 cut(s)	253, 634
CfoI	GCGC	2 cut(s)	275, 606
Cfr13I	GGNCC	1 cut(s)	240
ClaI	ATCGAT	1 cut(s)	369
CviAII	CATG	5 cut(s)	35, 65, 244, 445, 608
DdeI	CTNAG	2 cut(s)	290, 528
DpnI	GATC	4 cut(s)	8, 19, 376, 483
DpnII	GATC	4 cut(s)	6, 17, 374, 481
Eco130I	CCWWGG	2 cut(s)	214, 607
Eco147I	AGGCCT	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	437
EcoT14I	CCWWGG	2 cut(s)	214, 607
ErhI	CCWWGG	2 cut(s)	214, 607
FaeI	CATG	5 cut(s)	38, 68, 247, 448, 611
FaqI	GGGAC	2 cut(s)	184, 326
FatI	CATG	5 cut(s)	34, 64, 243, 444, 607
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	402
GlaI	GCGC	2 cut(s)	274, 605
GluI	GCNGC	1 cut(s)	402
HaeII	RGCGCY	2 cut(s)	276, 607
HaeIII	GGCC	3 cut(s)	242, 255, 264
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	2 cut(s)	275, 606
Hin1II	CATG	5 cut(s)	38, 68, 247, 448, 611
Hin6I	GCGC	2 cut(s)	273, 604
HinP1I	GCGC	2 cut(s)	273, 604
HinfI	GANTC	2 cut(s)	26, 227
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	53
Hpy188I	TCNGA	3 cut(s)	135, 486, 520
Hpy188III	TCNNGA	3 cut(s)	10, 80, 530
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	2 cut(s)	313, 451
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	101, 128
HpyCH4V	TGCA	6 cut(s)	64, 182, 389, 401, 573, 632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	149, 248, 261, 270, 386
HpyF3I	CTNAG	2 cut(s)	290, 528
HpySE526I	ACGT	2 cut(s)	101, 128
Hsp92II	CATG	5 cut(s)	38, 68, 247, 448, 611
HspAI	GCGC	2 cut(s)	273, 604
Kpn2I	TCCGGA	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	4 cut(s)	6, 17, 374, 481
LmnI	GCTCC	2 cut(s)	82, 464
Lsp1109I	GCAGC	1 cut(s)	413
MaeII	ACGT	2 cut(s)	101, 128
MalI	GATC	4 cut(s)	8, 19, 376, 483
MboI	GATC	4 cut(s)	6, 17, 374, 481
MboII	GAAGA	1 cut(s)	559
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	3 cut(s)	406, 496, 612
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	2 cut(s)	498, 620
MnlI	CCTC	4 cut(s)	68, 275, 443, 526
MroI	TCCGGA	1 cut(s)	79
MroXI	GAANNNNTTC	1 cut(s)	500
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	5 cut(s)	149, 248, 261, 270, 386
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	4 cut(s)	6, 17, 374, 481
NlaIII	CATG	5 cut(s)	38, 68, 247, 448, 611
NlaIV	GGNNCC	1 cut(s)	198
PceI	AGGCCT	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	26
PflFI	GACNNNGTC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	221
Psp1406I	AACGTT	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	240
PstI	CTGCAG	1 cut(s)	575
PsyI	GACNNNGTC	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	39
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	4 cut(s)	6, 17, 374, 481
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	140
SfcI	CTRYAG	2 cut(s)	307, 571
SfiI	GGCCNNNNNGGCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	39
Sse9I	AATT	3 cut(s)	406, 496, 612
SseBI	AGGCCT	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	264
StyI	CCWWGG	2 cut(s)	214, 607
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	2 cut(s)	104, 131
TaqI	TCGA	1 cut(s)	369
TaqII	GACCGA	1 cut(s)	220
TasI	AATT	3 cut(s)	406, 496, 612
TfiI	GAWTC	1 cut(s)	26
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	433
TspRI	CASTG	1 cut(s)	304
Tth111I	GACNNNGTC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	406
XmnI	GAANNNNTTC	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.