Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013980

Physical Location & Seq

Genomic Coordinates Reverse (-)

2549087 .. 2549818

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G052900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGATCAAGATACAAGCTGAGGAATCCCGGCACTGGCCTGATGATGAACAAAAACTTCCCCTCTTGCAAGATATGCCAAAGTCCGTAACAGAGGAGGAAAGAACCTTGATACAGAAAGCCATTCGCCAGACGTTTCAAAGCACAGCTCATTTGGCCAATCTTTTACCAACTGGAACAGTTCTTGCATTTCAGCTTCTAGCACCCATATTTTCAAACCAAGGCAACTGTGACTCAGTCAGCCGGTCCATGACTGCTGGTCTTGTAGCCCTCTGTGGAGCTTCATGTTTTCTACTGAGCTTCACTGACAGCTATAGAGACAAGAATGGAAATGTCTGTTATGGCTTTGCTACATTCCGAGGCTTATGGATCATCGATGGGTCAACCACCCTTTCACCCGAAGTTGATGCAAATTTCCAACTGCGGTTTATAGATTTCCTCCATGCCTTTATGTCAATACTTGTATTTGCAGCTGTTGCACTATTTGATCAGAATGTAGTGAATTGCTTCTATCCAACCCCGTCGGATAAGGCTCAGGAGATTCTCACAGCATTGCCAGTTGGCATTGGTGTCATTTGCAGTATGTTGTTTGTTGTTTTTCCAACCAAGCGCCATGGAATTGGCTTCCCCCTGTCTGTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009705 GO:0009838 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048731 GO:0048856 GO:0071840 GO:0090693 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

215

Amino Acids

23.66

Weight (kDa)

5.3

Isoelectric Point (pI)

46.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18425 AT5G46090
fragaria_vesca	FvH4_3g08540
malus_domestica	MD05G1310000.v1.1 MD10G1288800.v1.1
prunus_persica	Prupe.4G052900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0009301
rosa_laevigata	RLG00000031646
rosa_multiflora	Rmu_sc0006233.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066800 Rroxscaffold_1G00067500
rosa_rugosa	Rorug04G0441700
rosa_samantha	Rh5AG072100 Rh5BG068600 Rh5CG081000 Rh5DG068800
rosa_wichuraiana	Rw5G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	424
AclWI	GGATC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	36
AgsI	TTSAA	2 cut(s)	140, 216
AhdI	GACNNNNNGTC	1 cut(s)	258
AluBI	AGCT	7 cut(s)	20, 149, 196, 281, 300, 312, 473
AluI	AGCT	7 cut(s)	20, 149, 196, 281, 300, 312, 473
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	377
AoxI	GGCC	2 cut(s)	38, 156
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	246
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	387
AvaII	GGWCC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	1 cut(s)	371
BcgI	CGANNNNNNTGC	2 cut(s)	389, 423
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	200
BfmI	CTRYAG	1 cut(s)	313
BfoI	RGCGCY	1 cut(s)	613
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	246
BmeRI	GACNNNNNGTC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	246
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	397
Bpu10I	CCTNAGC	2 cut(s)	21, 534
BpuMI	CCSGG	1 cut(s)	31
Bsa29I	ATCGAT	1 cut(s)	375
BsaJI	CCNNGG	3 cut(s)	220, 358, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	36
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	3 cut(s)	41, 178, 557
Bse3DI	GCAATG	1 cut(s)	551
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	220, 358, 613
BseLI	CCNNNNNNNGG	1 cut(s)	36
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	4 cut(s)	12, 249, 287, 548
BseNI	ACTGG	3 cut(s)	41, 178, 557
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	482
BshFI	GGCC	2 cut(s)	40, 158
BshVI	ATCGAT	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	31, 244
BslI	CCNNNNNNNGG	1 cut(s)	36
BsmAI	GTCTC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	40, 158
Bsp143I	GATC	3 cut(s)	6, 369, 487
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	1 cut(s)	424
BspANI	GGCC	2 cut(s)	40, 158
BspCNI	CTCAG	4 cut(s)	13, 248, 288, 547
BspDI	ATCGAT	1 cut(s)	375
BspPI	GGATC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	3 cut(s)	41, 178, 557
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	220, 358, 613
BssMI	GATC	3 cut(s)	6, 369, 487
BssT1I	CCWWGG	2 cut(s)	220, 613
Bst4CI	ACNGT	2 cut(s)	181, 230
BstAPI	GCANNNNNTGC	2 cut(s)	76, 476
BstDEI	CTNAG	4 cut(s)	21, 235, 296, 534
BstDSI	CCRYGG	1 cut(s)	613
BstH2I	RGCGCY	1 cut(s)	613
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	3 cut(s)	9, 372, 490
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	3 cut(s)	6, 369, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 155, 476
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	482
BstXI	CCANNNNNNTGG	1 cut(s)	620
Bsu15I	ATCGAT	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	40, 158
BsuTUI	ATCGAT	1 cut(s)	375
BtgI	CCRYGG	1 cut(s)	613
BtsIMutI	CAGTG	2 cut(s)	34, 303
CfoI	GCGC	1 cut(s)	612
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	375
CviAII	CATG	4 cut(s)	250, 285, 443, 614
DdeI	CTNAG	4 cut(s)	21, 235, 296, 534
DpnI	GATC	3 cut(s)	8, 371, 489
DpnII	GATC	3 cut(s)	6, 369, 487
DriI	GACNNNNNGTC	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	156
Eam1105I	GACNNNNNGTC	1 cut(s)	258
Eco130I	CCWWGG	2 cut(s)	220, 613
Eco47I	GGWCC	1 cut(s)	246
EcoT14I	CCWWGG	2 cut(s)	220, 613
ErhI	CCWWGG	2 cut(s)	220, 613
FaeI	CATG	4 cut(s)	253, 288, 446, 617
FatI	CATG	4 cut(s)	249, 284, 442, 613
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	471
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	1 cut(s)	471
HaeII	RGCGCY	1 cut(s)	613
HaeIII	GGCC	2 cut(s)	40, 158
HapII	CCGG	2 cut(s)	31, 244
HhaI	GCGC	1 cut(s)	612
Hin1II	CATG	4 cut(s)	253, 288, 446, 617
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	3 cut(s)	26, 233, 541
HpaII	CCGG	2 cut(s)	31, 244
HphI	GGTGA	1 cut(s)	387
Hpy166II	GTNNAC	1 cut(s)	384
Hpy188I	TCNGA	3 cut(s)	359, 492, 526
Hpy188III	TCNNGA	2 cut(s)	10, 536
Hpy8I	GTNNAC	1 cut(s)	384
Hpy99I	CGWCG	1 cut(s)	526
HpyCH4III	ACNGT	2 cut(s)	181, 230
HpyCH4IV	ACGT	1 cut(s)	134
HpyCH4V	TGCA	6 cut(s)	70, 188, 410, 470, 479, 579
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 155, 476
HpyF3I	CTNAG	4 cut(s)	21, 235, 296, 534
HpySE526I	ACGT	1 cut(s)	134
Hsp92II	CATG	4 cut(s)	253, 288, 446, 617
HspAI	GCGC	1 cut(s)	610
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	3 cut(s)	6, 369, 487
LmnI	GCTCC	1 cut(s)	278
LpnPI	CCDG	9 cut(s)	22, 44, 54, 143, 159, 243, 257, 521, 570
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	134
MaeIII	GTNAC	2 cut(s)	88, 230
MalI	GATC	3 cut(s)	8, 371, 489
MboI	GATC	3 cut(s)	6, 369, 487
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	4 cut(s)	412, 502, 618, 640
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	4 cut(s)	442, 504, 539, 626
MnlI	CCTC	7 cut(s)	16, 74, 88, 91, 281, 353, 449
Mox20I	TGGCCA	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	506
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	1 cut(s)	643
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	2 cut(s)	31, 244
MspR9I	CCNGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	3 cut(s)	76, 155, 476
NciI	CCSGG	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	613
NdeII	GATC	3 cut(s)	6, 369, 487
NlaIII	CATG	4 cut(s)	253, 288, 446, 617
NmuCI	GTSAC	1 cut(s)	230
PdmI	GAANNNNTTC	1 cut(s)	506
PfeI	GAWTC	2 cut(s)	26, 541
PflFI	GACNNNGTC	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	246
PsyI	GACNNNGTC	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	643
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	3 cut(s)	6, 369, 487
Sau96I	GGNCC	1 cut(s)	246
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	9 cut(s)	22, 110, 137, 151, 198, 283, 302, 314, 475
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	246
Sse9I	AATT	4 cut(s)	412, 502, 618, 640
SsiI	CCGC	1 cut(s)	424
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	2 cut(s)	220, 613
TaaI	ACNGT	2 cut(s)	181, 230
TaiI	ACGT	1 cut(s)	137
TaqI	TCGA	1 cut(s)	375
TasI	AATT	4 cut(s)	412, 502, 618, 640
TfiI	GAWTC	2 cut(s)	26, 541
Tru1I	TTAA	1 cut(s)	643
Tru9I	TTAA	1 cut(s)	643
TscAI	CASTG	2 cut(s)	41, 310
TseFI	GTSAC	1 cut(s)	230
TseI	GCWGC	1 cut(s)	470
Tsp45I	GTSAC	1 cut(s)	230
TspDTI	ATGAA	2 cut(s)	63, 273
TspGWI	ACGGA	1 cut(s)	76
TspRI	CASTG	2 cut(s)	41, 310
Tth111I	GACNNNGTC	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	506
XspI	CTAG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.