Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013980

Physical Location & Seq

Genomic Coordinates Forward (+)

88815696 .. 88816385

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00067500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTTCAAAACAAACCTAGCAAAGAGTCCAAAGCATACGCATTCGTTATCAATGGAGATCAAGATAGGATCAAAGGAATCCAAGCATGATGGTGAGCAAAAACTTCCCCTCTTGCATGATACGCCAGCTCCGGAAATAGATGAGAAAAGAACGTTGATACAGAGAGCCATCAACCAGACGTTTCAGAGCACAGCTCATTTGGCTAATCTTTTACCTACTGGGACAGTTCTTGCATTTCAACTTCTGGCACCTATATTTACGAACCAAGGCAACTGCGACTCGGTCAGCAGGGCCATGACTGCTGGCCTTGTAGGCCTCTGTGGCGCTTCGTGTTTTCTACTGAGTTTCACTGACAGCTATAGGGACAAGAAGGGAAATGTCTGCTATGGATTTGCTACATTCAAAGGCTTATGGGTCATCGATGGATCAGCCACCCTTGCACCAGATGTTGCAGCAAATTTCAAACTGAAGTTTATAGATTTCCTCCACGCCTTCATGTCCATACTTGTATTTGGAGCTGTTGCGTTATTTGATCAGAATGTAGTGAATTGCTTCTACCCAACTCCGTCGGATAAGGCTCAGGAGGTTCTCACATCATTGCCAGTTGCCATTGGTGTCTTCTGCAGTATGTTGTTTGTTGTGTTTCCAACCAAGCGCCATGGAATTAGCTTCCCCCTATCTGCAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009705 GO:0009838 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048731 GO:0048856 GO:0071840 GO:0090693 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

229

Amino Acids

24.92

Weight (kDa)

8.51

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	62 - 224	8.5e-73	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0013980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18425 AT5G46090
fragaria_vesca	FvH4_3g08540
malus_domestica	MD05G1310000.v1.1 MD10G1288800.v1.1
prunus_persica	Prupe.4G052900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0009301
rosa_laevigata	RLG00000031646
rosa_multiflora	Rmu_sc0006233.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066800 Rroxscaffold_1G00067500
rosa_rugosa	Rorug04G0441700
rosa_samantha	Rh5AG072100 Rh5BG068600 Rh5CG081000 Rh5DG068800
rosa_wichuraiana	Rw5G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	247
AccIII	TCCGGA	1 cut(s)	130
AclI	AACGTT	1 cut(s)	152
AclWI	GGATC	2 cut(s)	76, 433
AcsI	RAATTY	1 cut(s)	457
AcuI	CTGAAG	1 cut(s)	488
AgsI	TTSAA	4 cut(s)	7, 239, 403, 463
AluBI	AGCT	6 cut(s)	128, 194, 357, 518, 669, 687
AluI	AGCT	6 cut(s)	128, 194, 357, 518, 669, 687
Alw21I	GWGCWC	1 cut(s)	191
AlwI	GGATC	2 cut(s)	76, 433
Aor13HI	TCCGGA	1 cut(s)	130
AoxI	GGCC	3 cut(s)	291, 304, 313
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	1 cut(s)	457
Asp700I	GAANNNNTTC	1 cut(s)	551
AspLEI	GCGC	2 cut(s)	326, 657
AspS9I	GGNCC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	247
BbsI	GAAGAC	1 cut(s)	610
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	3 cut(s)	83, 176, 416
BclI	TGATCA	1 cut(s)	532
BfaI	CTAG	1 cut(s)	17
BfmI	CTRYAG	2 cut(s)	358, 622
BfoI	RGCGCY	2 cut(s)	327, 658
BglI	GCCNNNNNGGC	2 cut(s)	312, 321
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
BmgT120I	GGNCC	1 cut(s)	291
BmiI	GGNNCC	1 cut(s)	249
BmrI	ACTGGG	1 cut(s)	228
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	1 cut(s)	610
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
Bpu10I	CCTNAGC	1 cut(s)	579
Bsa29I	ATCGAT	1 cut(s)	420
BsaJI	CCNNGG	2 cut(s)	265, 658
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	112, 142
Bse1I	ACTGG	2 cut(s)	223, 602
Bse3DI	GCAATG	1 cut(s)	596
BseAI	TCCGGA	1 cut(s)	130
BseCI	ATCGAT	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	265, 658
BseMI	GCAATG	1 cut(s)	596
BseMII	CTCAG	2 cut(s)	332, 593
BseNI	ACTGG	2 cut(s)	223, 602
BseXI	GCAGC	1 cut(s)	464
BshFI	GGCC	3 cut(s)	293, 306, 315
BshNI	GGYRCC	1 cut(s)	247
BshVI	ATCGAT	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	131
BslFI	GGGAC	2 cut(s)	235, 377
BsmFI	GGGAC	2 cut(s)	235, 377
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	3 cut(s)	293, 306, 315
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp13I	TCCGGA	1 cut(s)	130
Bsp143I	GATC	4 cut(s)	57, 68, 425, 532
Bsp19I	CCATGG	1 cut(s)	658
BspANI	GGCC	3 cut(s)	293, 306, 315
BspCNI	CTCAG	2 cut(s)	333, 592
BspDI	ATCGAT	1 cut(s)	420
BspEI	TCCGGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	626
BspPI	GGATC	2 cut(s)	76, 433
BspT107I	GGYRCC	1 cut(s)	247
BsrDI	GCAATG	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	223, 602
BssECI	CCNNGG	2 cut(s)	265, 658
BssMI	GATC	4 cut(s)	57, 68, 425, 532
BssT1I	CCWWGG	2 cut(s)	265, 658
Bst4CI	ACNGT	1 cut(s)	226
BstC8I	GCNNGC	3 cut(s)	126, 304, 685
BstDEI	CTNAG	2 cut(s)	341, 579
BstDSI	CCRYGG	1 cut(s)	658
BstH2I	RGCGCY	2 cut(s)	327, 658
BstHHI	GCGC	2 cut(s)	326, 657
BstKTI	GATC	4 cut(s)	60, 71, 428, 535
BstMBI	GATC	4 cut(s)	57, 68, 425, 532
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 200, 299, 312, 321, 437
BstSFI	CTRYAG	2 cut(s)	358, 622
BstV1I	GCAGC	1 cut(s)	464
BstV2I	GAAGAC	1 cut(s)	610
Bsu15I	ATCGAT	1 cut(s)	420
BsuRI	GGCC	3 cut(s)	293, 306, 315
BsuTUI	ATCGAT	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	658
BtsIMutI	CAGTG	1 cut(s)	348
Cac8I	GCNNGC	3 cut(s)	126, 304, 685
CfoI	GCGC	2 cut(s)	326, 657
Cfr13I	GGNCC	1 cut(s)	291
ClaI	ATCGAT	1 cut(s)	420
CviAII	CATG	5 cut(s)	86, 116, 295, 496, 659
DdeI	CTNAG	2 cut(s)	341, 579
DpnI	GATC	4 cut(s)	59, 70, 427, 534
DpnII	GATC	4 cut(s)	57, 68, 425, 532
Eco130I	CCWWGG	2 cut(s)	265, 658
Eco147I	AGGCCT	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	488
EcoT14I	CCWWGG	2 cut(s)	265, 658
ErhI	CCWWGG	2 cut(s)	265, 658
FaeI	CATG	5 cut(s)	89, 119, 298, 499, 662
FaqI	GGGAC	2 cut(s)	235, 377
FatI	CATG	5 cut(s)	85, 115, 294, 495, 658
FbaI	TGATCA	1 cut(s)	532
Fnu4HI	GCNGC	1 cut(s)	453
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	1 cut(s)	17
GlaI	GCGC	2 cut(s)	325, 656
GluI	GCNGC	1 cut(s)	453
HaeII	RGCGCY	2 cut(s)	327, 658
HaeIII	GGCC	3 cut(s)	293, 306, 315
HapII	CCGG	1 cut(s)	131
HhaI	GCGC	2 cut(s)	326, 657
Hin1II	CATG	5 cut(s)	89, 119, 298, 499, 662
Hin6I	GCGC	2 cut(s)	324, 655
HinP1I	GCGC	2 cut(s)	324, 655
HinfI	GANTC	3 cut(s)	25, 77, 278
HpaII	CCGG	1 cut(s)	131
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	3 cut(s)	186, 537, 571
Hpy188III	TCNNGA	3 cut(s)	61, 131, 581
Hpy99I	CGWCG	1 cut(s)	571
HpyAV	CCTTC	2 cut(s)	364, 502
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	152, 179
HpyCH4V	TGCA	6 cut(s)	115, 233, 440, 452, 624, 683
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 200, 299, 312, 321, 437
HpyF3I	CTNAG	2 cut(s)	341, 579
HpySE526I	ACGT	2 cut(s)	152, 179
Hsp92II	CATG	5 cut(s)	89, 119, 298, 499, 662
HspAI	GCGC	2 cut(s)	324, 655
Kpn2I	TCCGGA	1 cut(s)	130
Ksp22I	TGATCA	1 cut(s)	532
Kzo9I	GATC	4 cut(s)	57, 68, 425, 532
LmnI	GCTCC	2 cut(s)	133, 515
Lsp1109I	GCAGC	1 cut(s)	464
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	2 cut(s)	152, 179
MalI	GATC	4 cut(s)	59, 70, 427, 534
MboI	GATC	4 cut(s)	57, 68, 425, 532
MboII	GAAGA	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	191
MluCI	AATT	3 cut(s)	457, 547, 663
MlyI	GAGTC	2 cut(s)	34, 272
MmeI	TCCRAC	2 cut(s)	549, 671
MnlI	CCTC	4 cut(s)	119, 326, 494, 577
MroI	TCCGGA	1 cut(s)	130
MroXI	GAANNNNTTC	1 cut(s)	551
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	1 cut(s)	131
Mva1269I	GAATGC	1 cut(s)	40
MwoI	GCNNNNNNNGC	6 cut(s)	121, 200, 299, 312, 321, 437
NcoI	CCATGG	1 cut(s)	658
NdeII	GATC	4 cut(s)	57, 68, 425, 532
NlaIII	CATG	5 cut(s)	89, 119, 298, 499, 662
NlaIV	GGNNCC	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	315
PctI	GAATGC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	551
PfeI	GAWTC	1 cut(s)	77
PflFI	GACNNNGTC	1 cut(s)	281
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	2 cut(s)	33, 272
PpsI	GAGTC	2 cut(s)	33, 272
Psp1406I	AACGTT	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	626
PsyI	GACNNNGTC	1 cut(s)	281
RseI	CAYNNNNRTG	1 cut(s)	90
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	4 cut(s)	57, 68, 425, 532
Sau96I	GGNCC	1 cut(s)	291
SchI	GAGTC	2 cut(s)	34, 272
SduI	GDGCHC	1 cut(s)	191
SfcI	CTRYAG	2 cut(s)	358, 622
SfiI	GGCCNNNNNGGCC	1 cut(s)	312
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	3 cut(s)	457, 547, 663
SseBI	AGGCCT	1 cut(s)	315
SspMI	CTAG	1 cut(s)	17
StuI	AGGCCT	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	265, 658
TaaI	ACNGT	1 cut(s)	226
TaiI	ACGT	2 cut(s)	155, 182
TaqI	TCGA	1 cut(s)	420
TaqII	GACCGA	1 cut(s)	271
TasI	AATT	3 cut(s)	457, 547, 663
TfiI	GAWTC	1 cut(s)	77
TscAI	CASTG	1 cut(s)	355
TseI	GCWGC	1 cut(s)	452
TspDTI	ATGAA	1 cut(s)	484
TspGWI	ACGGA	1 cut(s)	555
TspRI	CASTG	1 cut(s)	355
Tth111I	GACNNNGTC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	551
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.