Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013980

Physical Location & Seq

Genomic Coordinates Forward (+)

37809630 .. 37810435

Gene Structure 806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1288800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGAGATCAAGATAAAAGCTGAGGCATCCCGACACCTGCATGATGAGGATCAGAAACTTCCCCTCTTGCAAGATGCACCAAAATCAGTGACAGAAGAGCAAAGAACGCTGATACAGAAAGCAATTCGCCAGACATTTCAGAGCATGGCTCATTTGGCCAATCTTTTGCCTACGGGAACAGTTCTTGCATTTCAGCTTCTGGCACCCATATTTACAAACCAGGGCAACTGTGACTCAGTCAGCCGGTCCATGACTGCTGGCCTTGTGGCCCTCTGTGGGGCTTCATGTTTTCTACTGAGTTTCACTGACAGCTTAAGGGACAATAAAGGAAATGTCTGTTATGGGTTTGCTACATTCAAAGGCTTATGGATCATTGATGGGTCAGCCAACATATCAACTGAAGTCGCTGCAAATTTCCATCTGCAGTTTATAGATTTCCTCCATGCATTCATGTCAATACTTGTATTCACAGCTGTTGCACTTTTTGATCAGAATGTAGTGAATTGCTTCTATCCAATGCCGTCAGATGAGGCTCAGGAGGTACTCACAGCATTGCCAGTTGGCATTGGCGTCATTTGCAGTATGTTGTTTGTTGTGTTTCCAACCAAGCGCCACGGAATGGGCTTCCCCCTCTCTGCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009705 GO:0009838 GO:0009987 GO:0010256 GO:0012505 GO:0016020 GO:0016043 GO:0031090 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048731 GO:0048856 GO:0071840 GO:0090693 GO:0098588 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF679

Protein Analysis

215

Amino Acids

23.43

Weight (kDa)

5.82

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	48 - 209	8.4e-73	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013980)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18425 AT5G46090
fragaria_vesca	FvH4_3g08540
malus_domestica	MD05G1310000.v1.1 MD10G1288800.v1.1
prunus_persica	Prupe.4G052900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0009301
rosa_laevigata	RLG00000031646
rosa_multiflora	Rmu_sc0006233.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066800 Rroxscaffold_1G00067500
rosa_rugosa	Rorug04G0441700
rosa_samantha	Rh5AG072100 Rh5BG068600 Rh5CG081000 Rh5DG068800
rosa_wichuraiana	Rw5G006740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	45
Acc36I	ACCTGC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	202
AccB7I	CCANNNNNTGG	1 cut(s)	619
AclWI	GGATC	2 cut(s)	57, 377
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	420
AcyI	GRCGYC	1 cut(s)	570
AfaI	GTAC	1 cut(s)	543
AfiI	CCNNNNNNNGG	3 cut(s)	276, 277, 619
AflII	CTTAAG	1 cut(s)	313
AgsI	TTSAA	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	20, 196, 312, 473
AluI	AGCT	4 cut(s)	20, 196, 312, 473
AlwI	GGATC	2 cut(s)	57, 377
AlwNI	CAGNNNCTG	1 cut(s)	199
AoxI	GGCC	3 cut(s)	156, 259, 267
ApeKI	GCWGC	1 cut(s)	407
ApoI	RAATTY	1 cut(s)	412
Asp700I	GAANNNNTTC	1 cut(s)	506
AspLEI	GCGC	1 cut(s)	612
AspS9I	GGNCC	2 cut(s)	246, 268
AvaII	GGWCC	1 cut(s)	246
BalI	TGGCCA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	202
BbvCI	CCTCAGC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	394
BccI	CCATC	2 cut(s)	371, 426
BceAI	ACGGC	1 cut(s)	505
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	487
BfmI	CTRYAG	1 cut(s)	422
BfoI	RGCGCY	1 cut(s)	613
BfrI	CTTAAG	1 cut(s)	313
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	1 cut(s)	408
BlsI	GCNGC	1 cut(s)	409
Bme1390I	CCNGG	1 cut(s)	221
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	2 cut(s)	246, 268
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	35, 64
BplI	GAGNNNNNCTC	2 cut(s)	133, 165
Bpu10I	CCTNAGC	2 cut(s)	21, 534
BsaBI	GATNNNNATC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	570
BsaJI	CCNNGG	2 cut(s)	220, 613
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 277, 619
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	557
Bse3DI	GCAATG	1 cut(s)	551
Bse8I	GATNNNNATC	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	220, 613
BseGI	GGATG	1 cut(s)	26
BseJI	GATNNNNATC	1 cut(s)	48
BseLI	CCNNNNNNNGG	3 cut(s)	276, 277, 619
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	4 cut(s)	12, 249, 287, 548
BseNI	ACTGG	1 cut(s)	557
BseXI	GCAGC	1 cut(s)	394
BshFI	GGCC	3 cut(s)	158, 261, 269
BshNI	GGYRCC	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	3 cut(s)	276, 277, 619
BsmFI	GGGAC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	446
BsnI	GGCC	3 cut(s)	158, 261, 269
Bsp143I	GATC	4 cut(s)	6, 49, 369, 487
BspANI	GGCC	3 cut(s)	158, 261, 269
BspCNI	CTCAG	4 cut(s)	13, 248, 288, 547
BspLI	GGNNCC	1 cut(s)	204
BspMAI	CTGCAG	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	57, 377
BspQI	GCTCTTC	1 cut(s)	90
BspT107I	GGYRCC	1 cut(s)	202
BspTI	CTTAAG	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	2 cut(s)	220, 613
BssMI	GATC	4 cut(s)	6, 49, 369, 487
BssNI	GRCGYC	1 cut(s)	570
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	181, 230
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	570
BstAFI	CTTAAG	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	4 cut(s)	21, 235, 296, 534
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	1 cut(s)	26
BstH2I	RGCGCY	1 cut(s)	613
BstHHI	GCGC	1 cut(s)	612
BstKTI	GATC	4 cut(s)	9, 52, 372, 490
BstMBI	GATC	4 cut(s)	6, 49, 369, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 155, 576
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	394
BsuRI	GGCC	3 cut(s)	158, 261, 269
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	1 cut(s)	26
BtsIMutI	CAGTG	2 cut(s)	93, 303
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	259
CaiI	CAGNNNCTG	1 cut(s)	199
CfoI	GCGC	1 cut(s)	612
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	246, 268
CseI	GACGC	1 cut(s)	559
Csp6I	GTAC	1 cut(s)	542
CviAII	CATG	6 cut(s)	41, 145, 250, 285, 443, 451
CviQI	GTAC	1 cut(s)	542
DdeI	CTNAG	4 cut(s)	21, 235, 296, 534
DpnI	GATC	4 cut(s)	8, 51, 371, 489
DpnII	GATC	4 cut(s)	6, 49, 369, 487
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	448
FaeI	CATG	6 cut(s)	44, 148, 253, 288, 446, 454
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	6 cut(s)	40, 144, 249, 284, 442, 450
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	408
FokI	GGATG	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	408
GlaI	GCGC	1 cut(s)	611
GluI	GCNGC	1 cut(s)	408
HaeII	RGCGCY	1 cut(s)	613
HaeIII	GGCC	3 cut(s)	158, 261, 269
HapII	CCGG	1 cut(s)	244
HgaI	GACGC	1 cut(s)	559
HhaI	GCGC	1 cut(s)	612
Hin1I	GRCGYC	1 cut(s)	570
Hin1II	CATG	6 cut(s)	44, 148, 253, 288, 446, 454
Hin6I	GCGC	1 cut(s)	610
HinP1I	GCGC	1 cut(s)	610
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	1 cut(s)	244
Hpy188I	TCNGA	4 cut(s)	54, 141, 492, 526
Hpy188III	TCNNGA	3 cut(s)	10, 30, 536
HpyCH4III	ACNGT	2 cut(s)	181, 230
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 155, 576
HpyF3I	CTNAG	4 cut(s)	21, 235, 296, 534
Hsp92I	GRCGYC	1 cut(s)	570
Hsp92II	CATG	6 cut(s)	44, 148, 253, 288, 446, 454
HspAI	GCGC	1 cut(s)	610
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	4 cut(s)	6, 49, 369, 487
LguI	GCTCTTC	1 cut(s)	90
LpnPI	CCDG	9 cut(s)	50, 143, 185, 206, 233, 243, 257, 521, 570
Lsp1109I	GCAGC	1 cut(s)	394
LweI	GCATC	2 cut(s)	35, 64
MaeIII	GTNAC	2 cut(s)	88, 230
MalI	GATC	4 cut(s)	8, 51, 371, 489
MboI	GATC	4 cut(s)	6, 49, 369, 487
MboII	GAAGA	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	4 cut(s)	123, 412, 502, 640
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	626
MnlI	CCTC	8 cut(s)	16, 40, 74, 281, 449, 523, 532, 641
Mox20I	TGGCCA	1 cut(s)	158
Mph1103I	ATGCAT	1 cut(s)	448
MroXI	GAANNNNTTC	1 cut(s)	506
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	1 cut(s)	314
MslI	CAYNNNNRTG	1 cut(s)	39
Msp20I	TGGCCA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	473
MspCI	CTTAAG	1 cut(s)	313
MspI	CCGG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	3 cut(s)	106, 155, 576
NdeII	GATC	4 cut(s)	6, 49, 369, 487
NlaIII	CATG	6 cut(s)	44, 148, 253, 288, 446, 454
NlaIV	GGNNCC	1 cut(s)	204
NmuCI	GTSAC	2 cut(s)	88, 230
NsiI	ATGCAT	1 cut(s)	448
PaqCI	CACCTGC	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	90
PctI	GAATGC	1 cut(s)	446
PdmI	GAANNNNTTC	1 cut(s)	506
PflFI	GACNNNGTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	619
PkrI	GCNGC	1 cut(s)	409
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	2 cut(s)	246, 268
PstI	CTGCAG	1 cut(s)	426
PstNI	CAGNNNCTG	1 cut(s)	199
PsyI	GACNNNGTC	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	1 cut(s)	543
RsaNI	GTAC	1 cut(s)	542
RseI	CAYNNNNRTG	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	1 cut(s)	408
Sau3AI	GATC	4 cut(s)	6, 49, 369, 487
Sau96I	GGNCC	2 cut(s)	246, 268
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	6 cut(s)	22, 39, 198, 314, 475, 543
SfaNI	GCATC	2 cut(s)	35, 64
SfcI	CTRYAG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	246
SmiMI	CAYNNNNRTG	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	4 cut(s)	123, 412, 502, 640
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	2 cut(s)	181, 230
TasI	AATT	4 cut(s)	123, 412, 502, 640
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	2 cut(s)	93, 310
TseFI	GTSAC	2 cut(s)	88, 230
TseI	GCWGC	1 cut(s)	407
Tsp45I	GTSAC	2 cut(s)	88, 230
TspDTI	ATGAA	2 cut(s)	273, 439
TspGWI	ACGGA	1 cut(s)	630
TspRI	CASTG	2 cut(s)	93, 310
Tth111I	GACNNNGTC	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	619
Vha464I	CTTAAG	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	412
XmnI	GAANNNNTTC	1 cut(s)	506
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.