Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008795

Physical Location & Seq

Genomic Coordinates Forward (+)

18755280 .. 18758333

Gene Structure 3054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGTCTTCTCTTCCTCTTCGCTCCGGTGAGAAGATGGAATCGCCTTCCATCTCCGACGCCGTTCCACTTCACGCACCAGAAGACGCGACCGCGGATTTTTCCCAACCGCAATCGCCGTTACATGAAGTTGATTCGTTTCCAGTTACTGAATCCTCCGATGATGTTGTTGTTAACGTCTCGGAGATACCGAATTTATCTCCGTCTGATGATGATTTTGACCACGAGCGAAATAGCGGCGAGGATCGCGATCAGGATCACGGCGAGAATCCGGTTGAGACCGATGGTGTTGTTGTTCCAATCGATGAGTTGAATCAGAAGATCATTAGACAGGTTGAATACTACTTTAGTGACGAGAATTTGCCTACTGACAAATTTCTTCTGAATGCAATGAAGAGAAACAAAAAAGGCTTTGTTCCTATTTCTACCATTGCTACGTTCCACAAAATGAAGAAGCTTACTCGAGATCATGCTTTGATAGTATCAGCCTTAAAGGAGTCATCGTTTCTTGTTGTTAGCGCTGATGAGAAGAAGGTGAAGCGGCTGAGTCCTCTTCCTGAGATCAGAGATCCAAAGATTTTCACTGTTTTGGTAGAAAATTTGCCAGAGGATCATTCAAATGAGAATATTCGAGAGATATTTGGTAAAGCTGGAAGTATTAAAAGTGTATCCATATGTGATCCAAATGCTGTTGAAGAATCAGAGAAGGGTGGGAAGAAGGAAAATTTCATCAGAACCAGATTACATGCCTTTGTGGAGTATGAAACGGTGGAGGCAGCTGAAAAAGCGGCAGCTACATTGAATAATGAGCAAGACTGGAGAAATGGGTTGCGAGTTAAGCTTCTTGAACAAGCAGCAGGAAAGTTTGCACAGAGAAGACCAGCTCGGAGGGAAGTCGATAAAGAAAAGGACACTACAGGCAGAGTTCATGATCAAACTGGAGGAGAGAAAAACAAAAAGACGCGTGAACATCAAAATCACCGTCTCCATCATTCTGATAATCCTGCTGATGATGACGGTGGCAATCATCAGAAGGATAAAAATGGAAACAAAGGCAGAGTTGTAGGACAAGGAAGACGACAGAATCATCAAGGCGGCAACGGCATTGGACATGGAACAGCTTCATCATCTTCTCATCCTAATTATCATCCTGTTGAGGTCTCAAAGCGTCCACCTGGCCCGAGAATGCCTGATGGGACGAGAGGGTTCACAATGGGGCGTGGTAAAGCGATTCCTCCTCCCACATCTACTCAAACCAGTCATGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

La RRM_1

Protein Analysis

422

Amino Acids

46.84

Weight (kDa)

6.11

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	107 - 165	3e-27	La domain
RRM_1	PF00076	195 - 269	2.4e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46250 AT5G46250 AT5G46250
fragaria_vesca	FvH4_3g05700 FvH4_3g05700 FvH4_3g05711
malus_domestica	MD05G1284700.v1.1 MD10G1263100.v1.1
prunus_persica	Prupe.1G274200_v2.0.a1 Prupe.4G079700_v2.0.a1 Prupe.4G079700_v2.0.a1
pyrus_communis	pycom05g26400 pycom10g21930
rosa_chinensis	RchiOBHm_Chr5g0013961
rosa_laevigata	RLG00000032055
rosa_multiflora	Rmu_sc0005803.1_g000018
rosa_roxburghii	Rroxscaffold_1G00062760
rosa_rugosa	Rorug05G0013600
rosa_samantha	Rh5AG107800 Rh5BG104500 Rh5CG116400 Rh5DG103100
rosa_wichuraiana	Rw5G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	86, 92, 246, 961
AciI	CCGC	7 cut(s)	90, 92, 107, 234, 538, 785, 1092
AclWI	GGATC	5 cut(s)	249, 261, 560, 615, 671
AcsI	RAATTY	5 cut(s)	190, 355, 371, 595, 721
AcyI	GRCGYC	1 cut(s)	57
AfeI	AGCGCT	1 cut(s)	517
AflIII	ACRYGT	1 cut(s)	959
AgsI	TTSAA	6 cut(s)	310, 335, 615, 692, 799, 845
AjnI	CCWGG	1 cut(s)	1171
AluBI	AGCT	7 cut(s)	454, 647, 776, 791, 838, 881, 1118
AluI	AGCT	7 cut(s)	454, 647, 776, 791, 838, 881, 1118
Alw26I	GTCTC	4 cut(s)	181, 269, 986, 1162
AlwI	GGATC	5 cut(s)	249, 261, 560, 615, 671
AlwNI	CAGNNNCTG	1 cut(s)	146
Ama87I	CYCGRG	2 cut(s)	459, 1177
Aor51HI	AGCGCT	1 cut(s)	517
AoxI	GGCC	1 cut(s)	1174
ApeKI	GCWGC	3 cut(s)	773, 788, 851
ApoI	RAATTY	5 cut(s)	190, 355, 371, 595, 721
ArsI	GACNNNNNNTTYG	2 cut(s)	964, 996
Asp700I	GAANNNNTTC	1 cut(s)	1117
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	1175
AsuHPI	GGTGA	3 cut(s)	38, 544, 968
AvaI	CYCGRG	2 cut(s)	459, 1177
BauI	CACGAG	1 cut(s)	221
BbsI	GAAGAC	3 cut(s)	87, 880, 1078
BbvI	GCAGC	3 cut(s)	785, 800, 863
BccI	CCATC	5 cut(s)	28, 56, 275, 993, 1184
BceAI	ACGGC	4 cut(s)	44, 100, 274, 1114
BciT130I	CCWGG	1 cut(s)	1173
BciVI	GTATCC	1 cut(s)	676
BclI	TGATCA	1 cut(s)	928
BcoDI	GTCTC	4 cut(s)	181, 269, 986, 1162
BfmI	CTRYAG	1 cut(s)	912
BfoI	RGCGCY	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	676
BisI	GCNGC	7 cut(s)	235, 539, 774, 786, 789, 852, 1093
BlsI	GCNGC	7 cut(s)	236, 540, 775, 787, 790, 853, 1094
Bme1390I	CCNGG	1 cut(s)	1173
BmeT110I	CYCGRG	2 cut(s)	459, 1177
BmgT120I	GGNCC	1 cut(s)	1175
BmrFI	CCNGG	1 cut(s)	1173
BpiI	GAAGAC	3 cut(s)	87, 880, 1078
BpmI	CTGGAG	2 cut(s)	835, 957
Bsa29I	ATCGAT	1 cut(s)	300
BsaBI	GATNNNNATC	2 cut(s)	246, 252
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	2 cut(s)	269, 1162
BsaJI	CCNNGG	1 cut(s)	90
BsaWI	WCCGGW	2 cut(s)	23, 268
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bse1I	ACTGG	4 cut(s)	140, 818, 940, 1254
Bse3DI	GCAATG	2 cut(s)	393, 426
Bse8I	GATNNNNATC	2 cut(s)	246, 252
BseBI	CCWGG	1 cut(s)	1173
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	1132, 1144
BseJI	GATNNNNATC	2 cut(s)	246, 252
BseMI	GCAATG	2 cut(s)	393, 426
BseMII	CTCAG	2 cut(s)	533, 546
BseNI	ACTGG	4 cut(s)	140, 818, 940, 1254
BseRI	GAGGAG	2 cut(s)	954, 1224
BseXI	GCAGC	3 cut(s)	785, 800, 863
Bsh1236I	CGCG	4 cut(s)	86, 92, 246, 961
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	1176
BshVI	ATCGAT	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	90
BsiHKCI	CYCGRG	2 cut(s)	459, 1177
BsiSI	CCGG	2 cut(s)	24, 269
BslFI	GGGAC	1 cut(s)	1207
BsmAI	GTCTC	4 cut(s)	181, 269, 986, 1162
BsmBI	CGTCTC	2 cut(s)	181, 986
BsmFI	GGGAC	1 cut(s)	1207
BsmI	GAATGC	2 cut(s)	388, 1188
BsnI	GGCC	1 cut(s)	1176
Bso31I	GGTCTC	2 cut(s)	269, 1162
BsoBI	CYCGRG	2 cut(s)	459, 1177
Bsp68I	TCGCGA	1 cut(s)	246
BspACI	CCGC	7 cut(s)	90, 92, 107, 234, 538, 785, 1092
BspANI	GGCC	1 cut(s)	1176
BspCNI	CTCAG	2 cut(s)	534, 547
BspDI	ATCGAT	1 cut(s)	300
BspFNI	CGCG	4 cut(s)	86, 92, 246, 961
BspHI	TCATGA	2 cut(s)	925, 1258
BspPI	GGATC	5 cut(s)	249, 261, 560, 615, 671
BspTNI	GGTCTC	2 cut(s)	269, 1162
BsrDI	GCAATG	2 cut(s)	393, 426
BsrI	ACTGG	4 cut(s)	140, 818, 940, 1254
BssECI	CCNNGG	1 cut(s)	90
BssNI	GRCGYC	1 cut(s)	57
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	1173
Bst4CI	ACNGT	4 cut(s)	583, 766, 980, 1016
Bst6I	CTCTTC	4 cut(s)	15, 21, 386, 555
BstACI	GRCGYC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	542, 555
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	1132, 1144
BstFNI	CGCG	4 cut(s)	86, 92, 246, 961
BstH2I	RGCGCY	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	518
BstMAI	GTCTC	4 cut(s)	181, 269, 986, 1162
BstMCI	CGRYCG	1 cut(s)	90
BstMWI	GCNNNNNNNGC	4 cut(s)	243, 782, 835, 1098
BstNI	CCWGG	1 cut(s)	1173
BstNSI	RCATGY	1 cut(s)	746
BstSCI	CCNGG	1 cut(s)	1171
BstSFI	CTRYAG	1 cut(s)	912
BstUI	CGCG	4 cut(s)	86, 92, 246, 961
BstV1I	GCAGC	3 cut(s)	785, 800, 863
BstV2I	GAAGAC	3 cut(s)	87, 880, 1078
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
Bsu15I	ATCGAT	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	1 cut(s)	1176
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	1132, 1144
BtsIMutI	CAGTG	1 cut(s)	579
BtuMI	TCGCGA	1 cut(s)	246
CaiI	CAGNNNCTG	1 cut(s)	146
CciI	TCATGA	2 cut(s)	925, 1258
CfoI	GCGC	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	1175
Cfr42I	CCGCGG	1 cut(s)	93
ClaI	ATCGAT	1 cut(s)	300
CseI	GACGC	4 cut(s)	65, 92, 967, 1154
CviAII	CATG	6 cut(s)	122, 467, 743, 926, 1109, 1259
DdeI	CTNAG	2 cut(s)	542, 555
Eam1104I	CTCTTC	4 cut(s)	15, 21, 386, 555
EarI	CTCTTC	4 cut(s)	15, 21, 386, 555
Eco31I	GGTCTC	2 cut(s)	269, 1162
Eco47III	AGCGCT	1 cut(s)	517
Eco88I	CYCGRG	2 cut(s)	459, 1177
EcoRII	CCWGG	1 cut(s)	1171
Esp3I	CGTCTC	2 cut(s)	181, 986
FaeI	CATG	6 cut(s)	125, 470, 746, 929, 1112, 1262
FaiI	YATR	9 cut(s)	123, 468, 671, 673, 744, 759, 927, 1110, 1260
FaqI	GGGAC	1 cut(s)	1207
FatI	CATG	6 cut(s)	121, 466, 742, 925, 1108, 1258
FauNDI	CATATG	1 cut(s)	671
FbaI	TGATCA	1 cut(s)	928
Fnu4HI	GCNGC	7 cut(s)	235, 539, 774, 786, 789, 852, 1093
FokI	GGATG	2 cut(s)	1119, 1131
Fsp4HI	GCNGC	7 cut(s)	235, 539, 774, 786, 789, 852, 1093
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	7 cut(s)	235, 539, 774, 786, 789, 852, 1093
GsuI	CTGGAG	2 cut(s)	835, 957
HaeII	RGCGCY	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	1176
HapII	CCGG	2 cut(s)	24, 269
HgaI	GACGC	4 cut(s)	65, 92, 967, 1154
HhaI	GCGC	1 cut(s)	518
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	6 cut(s)	125, 470, 746, 929, 1112, 1262
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	2 cut(s)	452, 836
HpaI	GTTAAC	1 cut(s)	172
HpaII	CCGG	2 cut(s)	24, 269
HphI	GGTGA	3 cut(s)	38, 544, 968
Hpy166II	GTNNAC	4 cut(s)	172, 965, 1169, 1206
Hpy188III	TCNNGA	8 cut(s)	245, 251, 461, 554, 629, 842, 926, 1259
Hpy8I	GTNNAC	4 cut(s)	172, 965, 1169, 1206
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	5 cut(s)	54, 523, 697, 709, 1024
HpyCH4III	ACNGT	4 cut(s)	583, 766, 980, 1016
HpyCH4IV	ACGT	2 cut(s)	174, 434
HpyCH4V	TGCA	2 cut(s)	386, 866
HpyF10VI	GCNNNNNNNGC	4 cut(s)	243, 782, 835, 1098
HpyF3I	CTNAG	2 cut(s)	542, 555
HpySE526I	ACGT	2 cut(s)	174, 434
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	6 cut(s)	125, 470, 746, 929, 1112, 1262
HspAI	GCGC	1 cut(s)	516
Ksp22I	TGATCA	1 cut(s)	928
KspAI	GTTAAC	1 cut(s)	172
KspI	CCGCGG	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	3 cut(s)	785, 800, 863
MaeII	ACGT	2 cut(s)	174, 434
MaeIII	GTNAC	3 cut(s)	117, 142, 347
MflI	RGATCY	1 cut(s)	565
MluCI	AATT	6 cut(s)	190, 355, 371, 595, 721, 1138
MluI	ACGCGT	1 cut(s)	959
MlyI	GAGTC	2 cut(s)	503, 553
MmeI	TCCRAC	1 cut(s)	78
MroXI	GAANNNNTTC	1 cut(s)	1117
MseI	TTAA	4 cut(s)	171, 488, 657, 834
MslI	CAYNNNNRTG	1 cut(s)	615
MspA1I	CMGCKG	2 cut(s)	92, 776
MspI	CCGG	2 cut(s)	24, 269
MspR9I	CCNGG	1 cut(s)	1173
Mva1269I	GAATGC	2 cut(s)	388, 1188
MvaI	CCWGG	1 cut(s)	1173
MvnI	CGCG	4 cut(s)	86, 92, 246, 961
MwoI	GCNNNNNNNGC	4 cut(s)	243, 782, 835, 1098
NdeI	CATATG	1 cut(s)	671
NlaIII	CATG	6 cut(s)	125, 470, 746, 929, 1112, 1262
NmuCI	GTSAC	1 cut(s)	347
NruI	TCGCGA	1 cut(s)	246
NspI	RCATGY	1 cut(s)	746
PaeR7I	CTCGAG	1 cut(s)	459
PagI	TCATGA	2 cut(s)	925, 1258
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PctI	GAATGC	2 cut(s)	388, 1188
PdmI	GAANNNNTTC	1 cut(s)	1117
PfeI	GAWTC	8 cut(s)	38, 131, 149, 265, 310, 695, 1081, 1228
PkrI	GCNGC	7 cut(s)	236, 540, 775, 787, 790, 853, 1094
PleI	GAGTC	2 cut(s)	502, 552
PpsI	GAGTC	2 cut(s)	502, 552
Psp6I	CCWGG	1 cut(s)	1171
PspGI	CCWGG	1 cut(s)	1171
PspPI	GGNCC	1 cut(s)	1175
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	776
RruI	TCGCGA	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	615
SacII	CCGCGG	1 cut(s)	93
SaqAI	TTAA	4 cut(s)	171, 488, 657, 834
SatI	GCNGC	7 cut(s)	235, 539, 774, 786, 789, 852, 1093
Sau96I	GGNCC	1 cut(s)	1175
SchI	GAGTC	2 cut(s)	503, 553
ScrFI	CCNGG	1 cut(s)	1173
SfcI	CTRYAG	1 cut(s)	912
Sfr274I	CTCGAG	1 cut(s)	459
Sfr303I	CCGCGG	1 cut(s)	93
SgrBI	CCGCGG	1 cut(s)	93
SlaI	CTCGAG	1 cut(s)	459
SmiMI	CAYNNNNRTG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	459
SmoI	CTYRAG	1 cut(s)	459
Sse9I	AATT	6 cut(s)	190, 355, 371, 595, 721, 1138
SsiI	CCGC	7 cut(s)	90, 92, 107, 234, 538, 785, 1092
SspI	AATATT	1 cut(s)	625
StyD4I	CCNGG	1 cut(s)	1171
TaaI	ACNGT	4 cut(s)	583, 766, 980, 1016
TaiI	ACGT	2 cut(s)	177, 437
TaqI	TCGA	4 cut(s)	300, 460, 628, 894
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	6 cut(s)	190, 355, 371, 595, 721, 1138
TauI	GCSGC	4 cut(s)	237, 541, 788, 1095
TfiI	GAWTC	8 cut(s)	38, 131, 149, 265, 310, 695, 1081, 1228
Tru1I	TTAA	4 cut(s)	171, 488, 657, 834
Tru9I	TTAA	4 cut(s)	171, 488, 657, 834
TscAI	CASTG	1 cut(s)	586
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	3 cut(s)	773, 788, 851
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	7 cut(s)	138, 404, 461, 715, 774, 914, 1110
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	586
XapI	RAATTY	5 cut(s)	190, 355, 371, 595, 721
XceI	RCATGY	1 cut(s)	746
XhoI	CTCGAG	1 cut(s)	459
XmnI	GAANNNNTTC	1 cut(s)	1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.