FvH4_3g05711

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008795
Physical Location & Seq
Forward (+)
3334609 .. 3338380
3772 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05711.t1

Sequence Viewer

Length: 1200 bp
ATGGGCCAGGGACAGGTGGGAACAGCGTCCAAGTTGGGCCATAATTCAGATGTATTAAGTGATGATGTGCAGCCTCGTCTGCCAATTCAGGTGGGAACCGACGCCGCCATCGTCGCCGTCCCCACAGCCACCGACTCCACTCCTCCACCGTCTCCGCCTCACGACTCCGATGTCTCCCCCGTCGGATCCCCCGATCGCGCGGCCGCCGAGGTTCAACGCCTGCCGTCCGACGAAGACCCCGATCAAGCCGCCGCCGGCGGTCTCACCGAGGATCTGAAGCAGAAGATTATCAAGCAGGTGGAATACTACTTTAGTGACGAAAACTTGTCTAACGACAAACACATGTTGAGTTGGATTAAAAAGGACGAAGAAGGCTTTGTTCCTATTTCAGTCATTGCTTCCTACAAGAAAACGAAGAAGCTCGTTCGTAACAACTCGTCGATAGCGGTTGCTTTGAAGGAATCTTCTCTCCTTGTTGTGAGTTCGAATGGGAAGAAGGTGAAACGACTTCATCCTCTACCATCACTTGAAACCAGGGATCCAAAGCAGTTCACTGTTTTGGTAGAGAATCTACCAGCTGATCATTCAGTGGAGAACCTTAAGAAAATGTTTAGTGAAGCCGGAAATATAAAAGATATATGCATACTTGACCCAAGTGCCATAGATGCATCAGCAAAAGGCGGGAAGGTTGAGAAGCCAATCAGTAATAAGTTGCATGCCCTTATAGAGTATGATACTGTGGAGGCTACTGAGAAAGCTGTTGCTATTTTAAACAACGAGGAAGATTGGAGAAATGGCATGCGGGTGAAGCTTCTAAAGCAGATGAGTAAGTATGGGCAGAGTGCACAGCGCAGACAATCTCGAGGGGGCTTTGATTCTGAGAAGAGTAGCAGTATCCGAACATCTGAAGCAGGGATTGAGGAGACTCATAATGCAAGTGAACATCACAACGGTACACCTGATGAAGAGGATGGAGGAGGCCAGTTGCCTAAGGAGAAAACTGGGCACAGGGGTCGAAATCGAGGGCAATCTGGCAGGCAGAAGTATCTTGGCCTCAATGGGTTTGGCCACGGAACTACTTCGTCTGCTCATCCAATTGAACCTTCAAAGCCACCACCTGGCCCCAGAATGCCTGATGGAACCAGGGGATTCACAACGGGACGAGGCCGGACTCCGGTGTCAGTTGTAGTTGTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La RRM_1

Protein Analysis

400

Amino Acids

43.05

Weight (kDa)

6.88

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 96 - 154 4.3e-21 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 286
AasI GACNNNNNNGTC 2 cut(s) 170, 1177
Acc36I ACCTGC 1 cut(s) 286
AccB7I CCANNNNNTGG 1 cut(s) 1118
AccII CGCG 2 cut(s) 198, 200
AclWI GGATC 5 cut(s) 180, 193, 279, 533, 546
AcoI YGGCCR 2 cut(s) 201, 1066
AcuI CTGAAG 2 cut(s) 296, 927
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 1 cut(s) 955
AfiI CCNNNNNNNGG 3 cut(s) 13, 1118, 1174
AflII CTTAAG 1 cut(s) 599
AflIII ACRYGT 1 cut(s) 342
AgsI TTSAA 5 cut(s) 215, 457, 530, 1100, 1107
AjnI CCWGG 4 cut(s) 6, 533, 1117, 1142
AjuI GAANNNNNNNTTGG 2 cut(s) 1087, 1119
AluBI AGCT 4 cut(s) 421, 578, 758, 811
AluI AGCT 4 cut(s) 421, 578, 758, 811
Alw21I GWGCWC 1 cut(s) 847
Alw26I GTCTC 4 cut(s) 156, 178, 266, 917
Alw44I GTGCAC 1 cut(s) 843
AlwI GGATC 5 cut(s) 180, 193, 279, 533, 546
Ama87I CYCGRG 1 cut(s) 861
AoxI GGCC 8 cut(s) 4, 37, 201, 979, 1051, 1066, 1120, 1165
ApaLI GTGCAC 1 cut(s) 843
ApeKI GCWGC 1 cut(s) 70
Asp700I GAANNNNTTC 1 cut(s) 1078
AspLEI GCGC 2 cut(s) 200, 852
AspS9I GGNCC 3 cut(s) 4, 37, 1121
AsuHPI GGTGA 3 cut(s) 256, 511, 817
AsuII TTCGAA 1 cut(s) 485
AvaI CYCGRG 1 cut(s) 861
AxyI CCTNAGG 1 cut(s) 990
BaeGI GKGCMC 2 cut(s) 847, 1008
BalI TGGCCA 1 cut(s) 1068
BamHI GGATCC 2 cut(s) 185, 538
BbsI GAAGAC 1 cut(s) 240
Bbv12I GWGCWC 1 cut(s) 847
BbvI GCAGC 1 cut(s) 82
BccI CCATC 4 cut(s) 116, 529, 965, 1130
BceAI ACGGC 2 cut(s) 101, 208
BcgI CGANNNNNNTGC 2 cut(s) 995, 1029
BciT130I CCWGG 4 cut(s) 8, 535, 1119, 1144
BciVI GTATCC 1 cut(s) 905
BclI TGATCA 1 cut(s) 580
BcoDI GTCTC 4 cut(s) 156, 178, 266, 917
BfrI CTTAAG 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 286
BfuI GTATCC 1 cut(s) 905
BisI GCNGC 6 cut(s) 71, 105, 201, 204, 249, 252
BlsI GCNGC 6 cut(s) 72, 106, 202, 205, 250, 253
Bme1390I CCNGG 4 cut(s) 8, 535, 1119, 1144
BmeT110I CYCGRG 1 cut(s) 861
BmgT120I GGNCC 3 cut(s) 4, 37, 1121
BmiI GGNNCC 5 cut(s) 97, 187, 540, 1123, 1141
BmrFI CCNGG 4 cut(s) 8, 535, 1119, 1144
BmrI ACTGGG 1 cut(s) 1011
BmsI GCATC 2 cut(s) 655, 677
BmuI ACTGGG 1 cut(s) 1011
BpiI GAAGAC 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 485
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 6 cut(s) 7, 207, 267, 534, 1069, 1143
BsaWI WCCGGW 1 cut(s) 1174
Bsc4I CCNNNNNNNGG 3 cut(s) 13, 1118, 1174
Bse118I RCCGGY 1 cut(s) 254
Bse1I ACTGG 2 cut(s) 982, 1006
Bse21I CCTNAGG 1 cut(s) 990
Bse3DI GCAATG 1 cut(s) 393
BseBI CCWGG 4 cut(s) 8, 535, 1119, 1144
BseDI CCNNGG 6 cut(s) 7, 207, 267, 534, 1069, 1143
BseGI GGATG 3 cut(s) 511, 976, 1090
BseLI CCNNNNNNNGG 3 cut(s) 13, 1118, 1174
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 2 cut(s) 741, 870
BseNI ACTGG 2 cut(s) 982, 1006
BseRI GAGGAG 3 cut(s) 132, 935, 990
BseSI GKGCMC 2 cut(s) 847, 1008
BseX3I CGGCCG 1 cut(s) 201
BseXI GCAGC 1 cut(s) 82
BsgI GTGCAG 1 cut(s) 89
Bsh1236I CGCG 2 cut(s) 198, 200
Bsh1285I CGRYCG 2 cut(s) 196, 204
BshFI GGCC 8 cut(s) 6, 39, 203, 981, 1053, 1068, 1122, 1167
BsiEI CGRYCG 2 cut(s) 196, 204
BsiHKAI GWGCWC 1 cut(s) 847
BsiHKCI CYCGRG 1 cut(s) 861
BsiSI CCGG 4 cut(s) 255, 621, 1168, 1175
BslFI GGGAC 3 cut(s) 24, 104, 1173
BslI CCNNNNNNNGG 3 cut(s) 13, 1118, 1174
BsmAI GTCTC 4 cut(s) 156, 178, 266, 917
BsmBI CGTCTC 1 cut(s) 156
BsmFI GGGAC 3 cut(s) 24, 104, 1173
BsmI GAATGC 1 cut(s) 1134
BsnI GGCC 8 cut(s) 6, 39, 203, 981, 1053, 1068, 1122, 1167
Bso31I GGTCTC 1 cut(s) 266
BsoBI CYCGRG 1 cut(s) 861
Bsp119I TTCGAA 1 cut(s) 485
Bsp1286I GDGCHC 2 cut(s) 847, 1008
Bsp143I GATC 6 cut(s) 185, 193, 241, 271, 538, 580
BspANI GGCC 8 cut(s) 6, 39, 203, 981, 1053, 1068, 1122, 1167
BspCNI CTCAG 2 cut(s) 742, 871
BspFNI CGCG 2 cut(s) 198, 200
BspLI GGNNCC 5 cut(s) 97, 187, 540, 1123, 1141
BspMI ACCTGC 1 cut(s) 286
BspPI GGATC 5 cut(s) 180, 193, 279, 533, 546
BspT104I TTCGAA 1 cut(s) 485
BspTI CTTAAG 1 cut(s) 599
BspTNI GGTCTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 393
BsrFI RCCGGY 1 cut(s) 254
BsrI ACTGG 2 cut(s) 982, 1006
BssAI RCCGGY 1 cut(s) 254
BssECI CCNNGG 6 cut(s) 7, 207, 267, 534, 1069, 1143
BssMI GATC 6 cut(s) 185, 193, 241, 271, 538, 580
BssNI GRCGYC 1 cut(s) 102
Bst2UI CCWGG 4 cut(s) 8, 535, 1119, 1144
Bst4CI ACNGT 4 cut(s) 150, 556, 739, 953
Bst6I CTCTTC 2 cut(s) 878, 960
BstACI GRCGYC 1 cut(s) 102
BstAFI CTTAAG 1 cut(s) 599
BstBI TTCGAA 1 cut(s) 485
BstC8I GCNNGC 5 cut(s) 221, 256, 717, 800, 1037
BstDEI CTNAG 3 cut(s) 750, 879, 990
BstDSI CCRYGG 1 cut(s) 1069
BstF5I GGATG 3 cut(s) 511, 976, 1090
BstFNI CGCG 2 cut(s) 198, 200
BstHHI GCGC 2 cut(s) 200, 852
BstKTI GATC 6 cut(s) 188, 196, 244, 274, 541, 583
BstMAI GTCTC 4 cut(s) 156, 178, 266, 917
BstMBI GATC 6 cut(s) 185, 193, 241, 271, 538, 580
BstMCI CGRYCG 2 cut(s) 196, 204
BstMWI GCNNNNNNNGC 5 cut(s) 79, 113, 665, 808, 817
BstNI CCWGG 4 cut(s) 8, 535, 1119, 1144
BstNSI RCATGY 3 cut(s) 346, 719, 802
BstSCI CCNGG 4 cut(s) 6, 533, 1117, 1142
BstSLI GKGCMC 2 cut(s) 847, 1008
BstUI CGCG 2 cut(s) 198, 200
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 3 cut(s) 185, 271, 538
BstYI RGATCY 3 cut(s) 185, 271, 538
BstZI CGGCCG 1 cut(s) 201
Bsu36I CCTNAGG 1 cut(s) 990
BsuI GTATCC 1 cut(s) 905
BsuRI GGCC 8 cut(s) 6, 39, 203, 981, 1053, 1068, 1122, 1167
BtgI CCRYGG 1 cut(s) 1069
BtsCI GGATG 3 cut(s) 511, 976, 1090
BtsIMutI CAGTG 2 cut(s) 552, 594
BveI ACCTGC 1 cut(s) 286
Cac8I GCNNGC 5 cut(s) 221, 256, 717, 800, 1037
CciNI GCGGCCGC 1 cut(s) 201
CfoI GCGC 2 cut(s) 200, 852
Cfr10I RCCGGY 1 cut(s) 254
Cfr13I GGNCC 3 cut(s) 4, 37, 1121
CseI GACGC 2 cut(s) 15, 110
Csp6I GTAC 1 cut(s) 954
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 3 cut(s) 343, 716, 799
CviQI GTAC 1 cut(s) 954
DdeI CTNAG 3 cut(s) 750, 879, 990
DpnI GATC 6 cut(s) 187, 195, 243, 273, 540, 582
DpnII GATC 6 cut(s) 185, 193, 241, 271, 538, 580
DraI TTTAAA 1 cut(s) 771
DrdI GACNNNNNNGTC 2 cut(s) 170, 1177
DseDI GACNNNNNNGTC 2 cut(s) 170, 1177
EaeI YGGCCR 2 cut(s) 201, 1066
EagI CGGCCG 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 878, 960
EarI CTCTTC 2 cut(s) 878, 960
EciI GGCGGA 1 cut(s) 144
EclXI CGGCCG 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 266
Eco52I CGGCCG 1 cut(s) 201
Eco57I CTGAAG 2 cut(s) 296, 927
Eco81I CCTNAGG 1 cut(s) 990
Eco88I CYCGRG 1 cut(s) 861
EcoRII CCWGG 4 cut(s) 6, 533, 1117, 1142
EcoT22I ATGCAT 2 cut(s) 644, 670
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 3 cut(s) 346, 719, 802
FaqI GGGAC 3 cut(s) 24, 104, 1173
FatI CATG 3 cut(s) 342, 715, 798
FauI CCCGC 2 cut(s) 674, 795
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 6 cut(s) 71, 105, 201, 204, 249, 252
FokI GGATG 3 cut(s) 498, 983, 1077
Fsp4HI GCNGC 6 cut(s) 71, 105, 201, 204, 249, 252
GlaI GCGC 2 cut(s) 199, 851
GluI GCNGC 6 cut(s) 71, 105, 201, 204, 249, 252
HaeIII GGCC 8 cut(s) 6, 39, 203, 981, 1053, 1068, 1122, 1167
HapII CCGG 4 cut(s) 255, 621, 1168, 1175
HgaI GACGC 2 cut(s) 15, 110
HhaI GCGC 2 cut(s) 200, 852
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 3 cut(s) 346, 719, 802
Hin6I GCGC 2 cut(s) 198, 850
HinP1I GCGC 2 cut(s) 198, 850
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 8 cut(s) 134, 164, 461, 568, 875, 925, 1149, 1171
HpaII CCGG 4 cut(s) 255, 621, 1168, 1175
HphI GGTGA 3 cut(s) 256, 511, 817
Hpy166II GTNNAC 4 cut(s) 552, 845, 941, 956
Hpy188I TCNGA 8 cut(s) 49, 169, 185, 229, 276, 880, 899, 907
Hpy188III TCNNGA 2 cut(s) 161, 861
Hpy8I GTNNAC 4 cut(s) 552, 845, 941, 956
Hpy99I CGWCG 5 cut(s) 104, 116, 185, 233, 442
HpyAV CCTTC 5 cut(s) 365, 451, 490, 679, 1113
HpyCH4III ACNGT 4 cut(s) 150, 556, 739, 953
HpyCH4V TGCA 6 cut(s) 70, 642, 668, 715, 845, 935
HpyF10VI GCNNNNNNNGC 5 cut(s) 79, 113, 665, 808, 817
HpyF3I CTNAG 3 cut(s) 750, 879, 990
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 3 cut(s) 346, 719, 802
HspAI GCGC 2 cut(s) 198, 850
KroI GCCGGC 1 cut(s) 254
KroNI GCCGGC 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 6 cut(s) 185, 193, 241, 271, 538, 580
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 2 cut(s) 655, 677
MaeIII GTNAC 2 cut(s) 314, 428
MalI GATC 6 cut(s) 187, 195, 243, 273, 540, 582
MboI GATC 6 cut(s) 185, 193, 241, 271, 538, 580
MboII GAAGA 9 cut(s) 245, 295, 380, 427, 456, 505, 794, 895, 977
MfeI CAATTG 1 cut(s) 1095
MflI RGATCY 3 cut(s) 185, 271, 538
MhlI GDGCHC 2 cut(s) 847, 1008
MlsI TGGCCA 1 cut(s) 1068
MluCI AATT 3 cut(s) 43, 84, 1095
MluNI TGGCCA 1 cut(s) 1068
MlyI GAGTC 4 cut(s) 128, 158, 919, 1165
MmeI TCCRAC 3 cut(s) 163, 252, 332
Mox20I TGGCCA 1 cut(s) 1068
Mph1103I ATGCAT 2 cut(s) 644, 670
MreI CGCCGGCG 1 cut(s) 254
MroNI GCCGGC 1 cut(s) 254
MroXI GAANNNNTTC 1 cut(s) 1078
MscI TGGCCA 1 cut(s) 1068
MseI TTAA 4 cut(s) 56, 357, 600, 770
MslI CAYNNNNRTG 1 cut(s) 803
Msp20I TGGCCA 1 cut(s) 1068
MspA1I CMGCKG 1 cut(s) 578
MspCI CTTAAG 1 cut(s) 599
MspI CCGG 4 cut(s) 255, 621, 1168, 1175
MspR9I CCNGG 4 cut(s) 8, 535, 1119, 1144
MunI CAATTG 1 cut(s) 1095
Mva1269I GAATGC 1 cut(s) 1134
MvaI CCWGG 4 cut(s) 8, 535, 1119, 1144
MvnI CGCG 2 cut(s) 198, 200
MwoI GCNNNNNNNGC 5 cut(s) 79, 113, 665, 808, 817
NaeI GCCGGC 1 cut(s) 256
NdeII GATC 6 cut(s) 185, 193, 241, 271, 538, 580
NgoMIV GCCGGC 1 cut(s) 254
NlaIII CATG 3 cut(s) 346, 719, 802
NlaIV GGNNCC 5 cut(s) 97, 187, 540, 1123, 1141
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 1 cut(s) 314
NotI GCGGCCGC 1 cut(s) 201
NsiI ATGCAT 2 cut(s) 644, 670
NspI RCATGY 3 cut(s) 346, 719, 802
NspV TTCGAA 1 cut(s) 485
PaeI GCATGC 2 cut(s) 719, 802
PaeR7I CTCGAG 1 cut(s) 861
PaqCI CACCTGC 1 cut(s) 286
PciI ACATGT 1 cut(s) 342
PcsI WCGNNNNNNNCGW 3 cut(s) 108, 189, 237
PctI GAATGC 1 cut(s) 1134
PdiI GCCGGC 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 1078
PfeI GAWTC 4 cut(s) 461, 568, 875, 1149
PflMI CCANNNNNTGG 1 cut(s) 1118
PkrI GCNGC 6 cut(s) 72, 106, 202, 205, 250, 253
Ple19I CGATCG 1 cut(s) 196
PleI GAGTC 4 cut(s) 128, 158, 919, 1165
PpsI GAGTC 4 cut(s) 128, 158, 919, 1165
PscI ACATGT 1 cut(s) 342
Psp6I CCWGG 4 cut(s) 6, 533, 1117, 1142
PspGI CCWGG 4 cut(s) 6, 533, 1117, 1142
PspN4I GGNNCC 5 cut(s) 97, 187, 540, 1123, 1141
PspPI GGNCC 3 cut(s) 4, 37, 1121
PsuI RGATCY 3 cut(s) 185, 271, 538
PvuI CGATCG 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 578
RsaI GTAC 1 cut(s) 955
RsaNI GTAC 1 cut(s) 954
RseI CAYNNNNRTG 1 cut(s) 803
SaqAI TTAA 4 cut(s) 56, 357, 600, 770
SatI GCNGC 6 cut(s) 71, 105, 201, 204, 249, 252
Sau3AI GATC 6 cut(s) 185, 193, 241, 271, 538, 580
Sau96I GGNCC 3 cut(s) 4, 37, 1121
SchI GAGTC 4 cut(s) 128, 158, 919, 1165
ScrFI CCNGG 4 cut(s) 8, 535, 1119, 1144
SduI GDGCHC 2 cut(s) 847, 1008
SfaNI GCATC 2 cut(s) 655, 677
Sfr274I CTCGAG 1 cut(s) 861
SfuI TTCGAA 1 cut(s) 485
SgrAI CRCCGGYG 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 861
SmiMI CAYNNNNRTG 1 cut(s) 803
SmlI CTYRAG 2 cut(s) 599, 861
SmoI CTYRAG 2 cut(s) 599, 861
SphI GCATGC 2 cut(s) 719, 802
Sse9I AATT 3 cut(s) 43, 84, 1095
StyD4I CCNGG 4 cut(s) 6, 533, 1117, 1142
TaaI ACNGT 4 cut(s) 150, 556, 739, 953
TaqI TCGA 5 cut(s) 440, 485, 862, 1015, 1021
TasI AATT 3 cut(s) 43, 84, 1095
TauI GCSGC 5 cut(s) 107, 203, 206, 251, 254
TfiI GAWTC 4 cut(s) 461, 568, 875, 1149
Tru1I TTAA 4 cut(s) 56, 357, 600, 770
Tru9I TTAA 4 cut(s) 56, 357, 600, 770
TscAI CASTG 2 cut(s) 559, 594
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 500, 978
TspGWI ACGGA 1 cut(s) 1086
TspRI CASTG 2 cut(s) 559, 594
Van91I CCANNNNNTGG 1 cut(s) 1118
Vha464I CTTAAG 1 cut(s) 599
VneI GTGCAC 1 cut(s) 843
XceI RCATGY 3 cut(s) 346, 719, 802
XhoI CTCGAG 1 cut(s) 861
XmnI GAANNNNTTC 1 cut(s) 1078
Zsp2I ATGCAT 2 cut(s) 644, 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.