FvH4_3g05700

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0008795
Physical Location & Seq
Forward (+)
3318986 .. 3323317
4332 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g05700.t2

Sequence Viewer

Length: 1116 bp
ATGGAAGACGAGGAGGGGCCCACCGACGCCGCCATCGTCGCCGTCCCCACGGCCACCGACTCCACTCCTCCACCGTCTCCGCCTCACGACTCCGATGTCTCCCCCGTCGGATCCCCCGATCGCGCGGCCGCCGAGGTTCAACGCCTGCCGTCCGACGACGACCCCGATCAAGCCGCCGCCGGCGGTCTCACCGAGGATCTGAAGCAGAAGATTATCAAGCAGGTGGAATACTACTTTAGTGATGAAAACTTGCCGAACGACAAATACATGTTGAGTTTGATTAAAAAGAACAAAGAAGGCTTTGTTCCTATTTCAGTCATTGCTTCCTTCAAGAAAATGAAGAAGCTCGTTCGTAACAACTCGTTGATAGCGGCAGCTTTGAAGGACTCTTCTCTCCTTGTTGTGAGTTCGAATGGGAAGAAGGTGAAACGACTTCATCCTCTACCATCACTTGAAACCAGGGATCCAAAGTTCACTGTTTTGGTAGAGAATCTACCAGCTGATCATTCAGTGGAGAACCTTAAGAAAATGTTTAGTGAAGCCGGAAATGTAAAAGATATATGCATACTTGACCCAAGTGCCATAGATGCATCAGCAAAAGGCGGGAAGGTTGAGAAGCCAATCAGTAATAAGTTGCATGCCCTTATAGAGTATGATACTGTGGAGGCTACTGAGAAAGCTGTTGCTATTTTAAACAATGAGGAAGATTGGAGAAATGGCATGCGGGTGAAGCTTCTAAAGCAGATGAGTAAGTATGGGCAGAGTGCACAGCGTAGACAATCTCGCAGGGGCTTTGATTCTGAGAAGAGTAGCAGTATCCGAACATCTGAAGCAGGGATTGAGGAGACTCATAATGCGAGCGAACATCACAATGGTACACCTGATGAAGAGGATGGAGGAGATCAGTTCCCTAAGGAGAAAACTGGGCACAGGGGTCGAAGTCGAGGACAATCTGGCAGGCCGAAGTATCGTGGCCTCAACGGGTTTGGCCATGGAACTTCTTCGTCTGCTCATCTAATTGAATCTTCAAAGCCACCACCTGGCCCTAGAATGCCTGATGGAACCAGGGGATTCACAATGGGACGAGGCCGGACTCCGGTGCCTAAGCAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La RRM_1

Protein Analysis

372

Amino Acids

40.39

Weight (kDa)

7.8

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 71 - 129 4.6e-27 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 211
AasI GACNNNNNNGTC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 211
AccB1I GGYRCC 1 cut(s) 1099
AccB7I CCANNNNNTGG 1 cut(s) 1040
AccI GTMKAC 1 cut(s) 775
AccII CGCG 2 cut(s) 123, 125
AclWI GGATC 5 cut(s) 105, 118, 204, 458, 471
AcoI YGGCCR 3 cut(s) 51, 126, 988
AcuI CTGAAG 2 cut(s) 221, 849
AcyI GRCGYC 1 cut(s) 27
AfaI GTAC 1 cut(s) 877
AfiI CCNNNNNNNGG 2 cut(s) 1040, 1096
AflII CTTAAG 1 cut(s) 521
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 6 cut(s) 140, 331, 382, 455, 1022, 1029
AjnI CCWGG 3 cut(s) 458, 1039, 1064
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
AluBI AGCT 5 cut(s) 346, 377, 500, 680, 733
AluI AGCT 5 cut(s) 346, 377, 500, 680, 733
Alw21I GWGCWC 1 cut(s) 769
Alw26I GTCTC 4 cut(s) 81, 103, 191, 839
Alw44I GTGCAC 1 cut(s) 765
AlwI GGATC 5 cut(s) 105, 118, 204, 458, 471
AoxI GGCC 8 cut(s) 17, 51, 126, 959, 973, 988, 1042, 1087
ApaI GGGCCC 1 cut(s) 21
ApaLI GTGCAC 1 cut(s) 765
ApeKI GCWGC 1 cut(s) 374
Asp700I GAANNNNTTC 1 cut(s) 1000
AspLEI GCGC 1 cut(s) 125
AspS9I GGNCC 3 cut(s) 17, 18, 1043
AsuHPI GGTGA 3 cut(s) 181, 436, 739
AsuII TTCGAA 1 cut(s) 410
AxyI CCTNAGG 1 cut(s) 912
BaeGI GKGCMC 3 cut(s) 21, 769, 930
BalI TGGCCA 1 cut(s) 990
BamHI GGATCC 2 cut(s) 110, 463
BanI GGYRCC 1 cut(s) 1099
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 769
BbvI GCAGC 1 cut(s) 386
BccI CCATC 4 cut(s) 41, 454, 887, 1052
BceAI ACGGC 3 cut(s) 26, 66, 133
BcgI CGANNNNNNTGC 2 cut(s) 917, 951
BciT130I CCWGG 3 cut(s) 460, 1041, 1066
BciVI GTATCC 1 cut(s) 827
BclI TGATCA 1 cut(s) 502
BcoDI GTCTC 4 cut(s) 81, 103, 191, 839
BfaI CTAG 1 cut(s) 1047
BfrI CTTAAG 1 cut(s) 521
BfuAI ACCTGC 1 cut(s) 211
BfuI GTATCC 1 cut(s) 827
BisI GCNGC 7 cut(s) 30, 126, 129, 174, 177, 372, 375
BlsI GCNGC 7 cut(s) 31, 127, 130, 175, 178, 373, 376
Bme1390I CCNGG 3 cut(s) 460, 1041, 1066
BmgT120I GGNCC 3 cut(s) 17, 18, 1043
BmiI GGNNCC 6 cut(s) 18, 19, 112, 465, 1063, 1101
BmrFI CCNGG 3 cut(s) 460, 1041, 1066
BmrI ACTGGG 1 cut(s) 933
BmsI GCATC 2 cut(s) 577, 599
BmuI ACTGGG 1 cut(s) 933
BpiI GAAGAC 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 1104
Bpu14I TTCGAA 1 cut(s) 410
BsaHI GRCGYC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 191
BsaJI CCNNGG 6 cut(s) 48, 132, 192, 459, 991, 1065
BsaWI WCCGGW 1 cut(s) 1096
Bsc4I CCNNNNNNNGG 2 cut(s) 1040, 1096
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 928
Bse21I CCTNAGG 1 cut(s) 912
Bse3DI GCAATG 1 cut(s) 318
BseBI CCWGG 3 cut(s) 460, 1041, 1066
BseDI CCNNGG 6 cut(s) 48, 132, 192, 459, 991, 1065
BseGI GGATG 2 cut(s) 436, 898
BseLI CCNNNNNNNGG 2 cut(s) 1040, 1096
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 2 cut(s) 663, 792
BseNI ACTGG 1 cut(s) 928
BseRI GAGGAG 4 cut(s) 26, 57, 857, 912
BseSI GKGCMC 3 cut(s) 21, 769, 930
BseX3I CGGCCG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 386
Bsh1236I CGCG 2 cut(s) 123, 125
Bsh1285I CGRYCG 2 cut(s) 121, 129
BshFI GGCC 8 cut(s) 19, 53, 128, 961, 975, 990, 1044, 1089
BshNI GGYRCC 1 cut(s) 1099
BsiEI CGRYCG 2 cut(s) 121, 129
BsiHKAI GWGCWC 1 cut(s) 769
BsiSI CCGG 4 cut(s) 180, 543, 1090, 1097
BslFI GGGAC 2 cut(s) 29, 1095
BslI CCNNNNNNNGG 2 cut(s) 1040, 1096
BsmAI GTCTC 4 cut(s) 81, 103, 191, 839
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 2 cut(s) 29, 1095
BsmI GAATGC 1 cut(s) 1056
BsnI GGCC 8 cut(s) 19, 53, 128, 961, 975, 990, 1044, 1089
Bso31I GGTCTC 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 410
Bsp120I GGGCCC 1 cut(s) 17
Bsp1286I GDGCHC 3 cut(s) 21, 769, 930
Bsp143I GATC 7 cut(s) 110, 118, 166, 196, 463, 502, 901
Bsp19I CCATGG 1 cut(s) 991
BspANI GGCC 8 cut(s) 19, 53, 128, 961, 975, 990, 1044, 1089
BspCNI CTCAG 2 cut(s) 664, 793
BspFNI CGCG 2 cut(s) 123, 125
BspLI GGNNCC 6 cut(s) 18, 19, 112, 465, 1063, 1101
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 5 cut(s) 105, 118, 204, 458, 471
BspT104I TTCGAA 1 cut(s) 410
BspT107I GGYRCC 1 cut(s) 1099
BspTI CTTAAG 1 cut(s) 521
BspTNI GGTCTC 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 1 cut(s) 928
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 6 cut(s) 48, 132, 192, 459, 991, 1065
BssMI GATC 7 cut(s) 110, 118, 166, 196, 463, 502, 901
BssNI GRCGYC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 991
Bst2UI CCWGG 3 cut(s) 460, 1041, 1066
Bst4CI ACNGT 3 cut(s) 75, 478, 661
Bst6I CTCTTC 3 cut(s) 394, 800, 882
BstACI GRCGYC 1 cut(s) 27
BstAFI CTTAAG 1 cut(s) 521
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 6 cut(s) 146, 181, 639, 722, 859, 959
BstDEI CTNAG 4 cut(s) 672, 801, 912, 1104
BstDSI CCRYGG 2 cut(s) 48, 991
BstF5I GGATG 2 cut(s) 436, 898
BstFNI CGCG 2 cut(s) 123, 125
BstHHI GCGC 1 cut(s) 125
BstKTI GATC 7 cut(s) 113, 121, 169, 199, 466, 505, 904
BstMAI GTCTC 4 cut(s) 81, 103, 191, 839
BstMBI GATC 7 cut(s) 110, 118, 166, 196, 463, 502, 901
BstMCI CGRYCG 2 cut(s) 121, 129
BstMWI GCNNNNNNNGC 4 cut(s) 38, 587, 730, 739
BstNI CCWGG 3 cut(s) 460, 1041, 1066
BstNSI RCATGY 3 cut(s) 271, 641, 724
BstSCI CCNGG 3 cut(s) 458, 1039, 1064
BstSLI GKGCMC 3 cut(s) 21, 769, 930
BstUI CGCG 2 cut(s) 123, 125
BstV1I GCAGC 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 3 cut(s) 110, 196, 463
BstYI RGATCY 3 cut(s) 110, 196, 463
BstZI CGGCCG 1 cut(s) 126
Bsu36I CCTNAGG 1 cut(s) 912
BsuI GTATCC 1 cut(s) 827
BsuRI GGCC 8 cut(s) 19, 53, 128, 961, 975, 990, 1044, 1089
BtgI CCRYGG 2 cut(s) 48, 991
BtsCI GGATG 2 cut(s) 436, 898
BtsIMutI CAGTG 2 cut(s) 474, 516
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 6 cut(s) 146, 181, 639, 722, 859, 959
CciNI GCGGCCGC 1 cut(s) 126
CfoI GCGC 1 cut(s) 125
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 3 cut(s) 17, 18, 1043
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 876
CviAII CATG 4 cut(s) 268, 638, 721, 992
CviQI GTAC 1 cut(s) 876
DdeI CTNAG 4 cut(s) 672, 801, 912, 1104
DpnI GATC 7 cut(s) 112, 120, 168, 198, 465, 504, 903
DpnII GATC 7 cut(s) 110, 118, 166, 196, 463, 502, 901
DraI TTTAAA 1 cut(s) 693
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 3 cut(s) 51, 126, 988
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 3 cut(s) 394, 800, 882
EarI CTCTTC 3 cut(s) 394, 800, 882
EciI GGCGGA 1 cut(s) 69
EclXI CGGCCG 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 991
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 191
Eco52I CGGCCG 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 221, 849
Eco81I CCTNAGG 1 cut(s) 912
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 3 cut(s) 458, 1039, 1064
EcoT14I CCWWGG 1 cut(s) 991
EcoT22I ATGCAT 2 cut(s) 566, 592
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 991
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 4 cut(s) 271, 641, 724, 995
FaqI GGGAC 2 cut(s) 29, 1095
FatI CATG 4 cut(s) 267, 637, 720, 991
FauI CCCGC 2 cut(s) 596, 717
FbaI TGATCA 1 cut(s) 502
FblI GTMKAC 1 cut(s) 775
Fnu4HI GCNGC 7 cut(s) 30, 126, 129, 174, 177, 372, 375
FokI GGATG 2 cut(s) 423, 905
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 7 cut(s) 30, 126, 129, 174, 177, 372, 375
FspBI CTAG 1 cut(s) 1047
GlaI GCGC 1 cut(s) 124
GluI GCNGC 7 cut(s) 30, 126, 129, 174, 177, 372, 375
HaeIII GGCC 8 cut(s) 19, 53, 128, 961, 975, 990, 1044, 1089
HapII CCGG 4 cut(s) 180, 543, 1090, 1097
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 125
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 4 cut(s) 271, 641, 724, 995
Hin6I GCGC 1 cut(s) 123
HinP1I GCGC 1 cut(s) 123
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 9 cut(s) 59, 89, 386, 490, 797, 847, 1022, 1071, 1093
HpaII CCGG 4 cut(s) 180, 543, 1090, 1097
HphI GGTGA 3 cut(s) 181, 436, 739
Hpy166II GTNNAC 4 cut(s) 474, 767, 776, 878
Hpy188I TCNGA 7 cut(s) 94, 110, 154, 201, 802, 821, 829
Hpy188III TCNNGA 2 cut(s) 86, 331
Hpy8I GTNNAC 4 cut(s) 474, 767, 776, 878
Hpy99I CGWCG 5 cut(s) 29, 41, 110, 158, 161
HpyAV CCTTC 5 cut(s) 290, 337, 376, 415, 601
HpyCH4III ACNGT 3 cut(s) 75, 478, 661
HpyCH4V TGCA 4 cut(s) 564, 590, 637, 767
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 587, 730, 739
HpyF3I CTNAG 4 cut(s) 672, 801, 912, 1104
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 4 cut(s) 271, 641, 724, 995
HspAI GCGC 1 cut(s) 123
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 502
Kzo9I GATC 7 cut(s) 110, 118, 166, 196, 463, 502, 901
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 2 cut(s) 577, 599
MaeI CTAG 1 cut(s) 1047
MaeIII GTNAC 1 cut(s) 353
MalI GATC 7 cut(s) 112, 120, 168, 198, 465, 504, 903
MboI GATC 7 cut(s) 110, 118, 166, 196, 463, 502, 901
MflI RGATCY 3 cut(s) 110, 196, 463
MhlI GDGCHC 3 cut(s) 21, 769, 930
MlsI TGGCCA 1 cut(s) 990
MluCI AATT 1 cut(s) 1017
MluNI TGGCCA 1 cut(s) 990
MlyI GAGTC 5 cut(s) 53, 83, 380, 841, 1087
MmeI TCCRAC 2 cut(s) 88, 177
Mox20I TGGCCA 1 cut(s) 990
Mph1103I ATGCAT 2 cut(s) 566, 592
MreI CGCCGGCG 1 cut(s) 179
MroNI GCCGGC 1 cut(s) 179
MroXI GAANNNNTTC 1 cut(s) 1000
MscI TGGCCA 1 cut(s) 990
MseI TTAA 4 cut(s) 282, 522, 692, 1114
MslI CAYNNNNRTG 2 cut(s) 725, 870
Msp20I TGGCCA 1 cut(s) 990
MspA1I CMGCKG 1 cut(s) 500
MspCI CTTAAG 1 cut(s) 521
MspI CCGG 4 cut(s) 180, 543, 1090, 1097
MspR9I CCNGG 3 cut(s) 460, 1041, 1066
Mva1269I GAATGC 1 cut(s) 1056
MvaI CCWGG 3 cut(s) 460, 1041, 1066
MvnI CGCG 2 cut(s) 123, 125
MwoI GCNNNNNNNGC 4 cut(s) 38, 587, 730, 739
NaeI GCCGGC 1 cut(s) 181
NcoI CCATGG 1 cut(s) 991
NdeII GATC 7 cut(s) 110, 118, 166, 196, 463, 502, 901
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 4 cut(s) 271, 641, 724, 995
NlaIV GGNNCC 6 cut(s) 18, 19, 112, 465, 1063, 1101
NmeAIII GCCGAG 1 cut(s) 157
NotI GCGGCCGC 1 cut(s) 126
NsiI ATGCAT 2 cut(s) 566, 592
NspI RCATGY 3 cut(s) 271, 641, 724
NspV TTCGAA 1 cut(s) 410
PaeI GCATGC 2 cut(s) 641, 724
PaqCI CACCTGC 1 cut(s) 211
PciI ACATGT 1 cut(s) 267
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 114, 162
PctI GAATGC 1 cut(s) 1056
PdiI GCCGGC 1 cut(s) 181
PdmI GAANNNNTTC 1 cut(s) 1000
PfeI GAWTC 4 cut(s) 490, 797, 1022, 1071
PflMI CCANNNNNTGG 1 cut(s) 1040
PkrI GCNGC 7 cut(s) 31, 127, 130, 175, 178, 373, 376
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 5 cut(s) 53, 83, 380, 841, 1087
PpsI GAGTC 5 cut(s) 53, 83, 380, 841, 1087
PscI ACATGT 1 cut(s) 267
Psp6I CCWGG 3 cut(s) 458, 1039, 1064
PspGI CCWGG 3 cut(s) 458, 1039, 1064
PspN4I GGNNCC 6 cut(s) 18, 19, 112, 465, 1063, 1101
PspOMI GGGCCC 1 cut(s) 17
PspPI GGNCC 3 cut(s) 17, 18, 1043
PsrI GAACNNNNNNTAC 2 cut(s) 248, 280
PsuI RGATCY 3 cut(s) 110, 196, 463
PvuI CGATCG 1 cut(s) 121
PvuII CAGCTG 1 cut(s) 500
RsaI GTAC 1 cut(s) 877
RsaNI GTAC 1 cut(s) 876
RseI CAYNNNNRTG 2 cut(s) 725, 870
SaqAI TTAA 4 cut(s) 282, 522, 692, 1114
SatI GCNGC 7 cut(s) 30, 126, 129, 174, 177, 372, 375
Sau3AI GATC 7 cut(s) 110, 118, 166, 196, 463, 502, 901
Sau96I GGNCC 3 cut(s) 17, 18, 1043
SchI GAGTC 5 cut(s) 53, 83, 380, 841, 1087
ScrFI CCNGG 3 cut(s) 460, 1041, 1066
SduI GDGCHC 3 cut(s) 21, 769, 930
SfaNI GCATC 2 cut(s) 577, 599
SfuI TTCGAA 1 cut(s) 410
SgrAI CRCCGGYG 1 cut(s) 179
SmiMI CAYNNNNRTG 2 cut(s) 725, 870
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
SphI GCATGC 2 cut(s) 641, 724
Sse9I AATT 1 cut(s) 1017
SspMI CTAG 1 cut(s) 1047
StyD4I CCNGG 3 cut(s) 458, 1039, 1064
StyI CCWWGG 1 cut(s) 991
TaaI ACNGT 3 cut(s) 75, 478, 661
TaqI TCGA 3 cut(s) 410, 937, 943
TasI AATT 1 cut(s) 1017
TauI GCSGC 6 cut(s) 32, 128, 131, 176, 179, 374
TfiI GAWTC 4 cut(s) 490, 797, 1022, 1071
Tru1I TTAA 4 cut(s) 282, 522, 692, 1114
Tru9I TTAA 4 cut(s) 282, 522, 692, 1114
TscAI CASTG 2 cut(s) 481, 516
TseI GCWGC 1 cut(s) 374
TspDTI ATGAA 4 cut(s) 258, 353, 425, 900
TspRI CASTG 2 cut(s) 481, 516
Van91I CCANNNNNTGG 1 cut(s) 1040
Vha464I CTTAAG 1 cut(s) 521
VneI GTGCAC 1 cut(s) 765
XceI RCATGY 3 cut(s) 271, 641, 724
XmiI GTMKAC 1 cut(s) 775
XmnI GAANNNNTTC 1 cut(s) 1000
XspI CTAG 1 cut(s) 1047
Zsp2I ATGCAT 2 cut(s) 566, 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.