MD05G1284700.v1.1

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0008795
Physical Location & Seq
Forward (+)
41862873 .. 41867383
4511 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1284700.v1.1.491

Sequence Viewer

Length: 1128 bp
ATGGAAGGCGAAGAGGGGCCCACCGTCACCACTCCCGCCGACACCACCCCCACCGTCATCACATGCGGCATCGACGCCCCCCCACCATCTCCGCCGCACGGTTCTGATATCTCACCCGTTGGATCTCCCGGTCGCGCCTCCTCTGAGATTCAACCACAGCCGTCGGATGATGACCCTGATCAATCGTCTGGGACTGGCGGTCTCTCTGAGGATCTCAAACAGAAGATTATTAAGCAGGTGGAATATTATTTCAGCGATGAAAACTTGCCCGCTGACAAGTATATGTTGAGTATGATTAAAAAGAACAAAGAAGGTTATGTTCCAATTTCAGTTATTGCTTCTTTTAGAAAAATGAAAAAGCTCATCCAAAACAATTCGTCAATAGCAGCTGCATTGAGGGAGTCTTCCCTCCTTGTTGTGAGTTCGAATGGGAAGAAGGTGAAACGGATTCATCCCCTTCCATTAACTGAAAACAAAGATCCAAAGTGCACTGTCTTGGTAGAGAACCTACCTGAGGATCATTCAGTGGAGAACCTTAAGAGTATACTTGGTGAAGCTGGAAAAATAAAAGATTTGTACATACTCAACCCACATGCAATAGAAGTGTCTACAAAAGGCGGCAAGGCTAAGAAGCTGATTAGTAATAAGTTGCATGCCCTTGTGAAGTATGATACCGTGGAGGCTGCTGACAAAGCTGTCACTACTTTAAATAATGAGGAGGATTGGAGAAATGGCATGCGGGTGAAGCTTCTAAAACAAGTGGGGAAGTATGGACAGAGAAAACAACCCTGGAAGGGTTTCGAATCTGAGAAGAGTAGCGGCAACAGAAGTAATGATCAAACAGGAGACGAGGAGTACCATACTGTAAGTGTGAAACATAATGATGCACGGACAATTGATGAAGAGGATGGAGAGCGAGTTCCCAAGGAGAAAACTGGGCATAGAGGTCGAAATAGGGGGCAGTCAGGAAGGCAAAAATACCGTGGGACCAATGGATTTGGTCATGGAACTACTACGGCCAATCACGGCATTGAACCTTGGAAGCCACCACCCGGCCCAAGGATGCCTGACGGAACCAGGGGATTCACATTGGGGCGAGGGCGGACTCTGAGCACAGCCCAGAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La RRM_1

Protein Analysis

376

Amino Acids

40.99

Weight (kDa)

8.99

Isoelectric Point (pI)

42.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 76 - 134 5.8e-26 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 226
AasI GACNNNNNNGTC 1 cut(s) 695
Acc36I ACCTGC 1 cut(s) 226
AccI GTMKAC 2 cut(s) 544, 608
AccII CGCG 1 cut(s) 135
AclWI GGATC 4 cut(s) 130, 219, 473, 525
AcoI YGGCCR 1 cut(s) 1017
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 578, 857
AfiI CCNNNNNNNGG 5 cut(s) 98, 514, 794, 1052, 1059
AflII CTTAAG 1 cut(s) 536
AgsI TTSAA 2 cut(s) 152, 1034
AhdI GACNNNNNGTC 1 cut(s) 198
AjnI CCWGG 2 cut(s) 788, 1076
AloI GAACNNNNNNTCC 2 cut(s) 903, 935
AluBI AGCT 6 cut(s) 361, 389, 557, 634, 695, 748
AluI AGCT 6 cut(s) 361, 389, 557, 634, 695, 748
Alw21I GWGCWC 2 cut(s) 491, 1115
Alw26I GTCTC 2 cut(s) 206, 840
Alw44I GTGCAC 1 cut(s) 487
AlwI GGATC 4 cut(s) 130, 219, 473, 525
AoxI GGCC 3 cut(s) 17, 1017, 1054
ApaI GGGCCC 1 cut(s) 21
ApaLI GTGCAC 1 cut(s) 487
ApeKI GCWGC 3 cut(s) 386, 389, 683
Asp700I GAANNNNTTC 1 cut(s) 797
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 4 cut(s) 17, 18, 987, 1055
AsuC2I CCSGG 2 cut(s) 129, 1053
AsuHPI GGTGA 5 cut(s) 19, 105, 451, 563, 754
AsuII TTCGAA 2 cut(s) 425, 801
AvaII GGWCC 1 cut(s) 987
AxyI CCTNAGG 1 cut(s) 513
BaeGI GKGCMC 2 cut(s) 21, 491
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 396
Bbv12I GWGCWC 2 cut(s) 491, 1115
BbvI GCAGC 3 cut(s) 376, 398, 670
BccI CCATC 2 cut(s) 94, 902
BceAI ACGGC 3 cut(s) 145, 1032, 1042
BcgI CGANNNNNNTGC 2 cut(s) 929, 963
BciT130I CCWGG 2 cut(s) 790, 1078
BclI TGATCA 2 cut(s) 178, 835
BcnI CCSGG 2 cut(s) 129, 1053
BcoDI GTCTC 2 cut(s) 206, 840
BfrI CTTAAG 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 226
BisI GCNGC 7 cut(s) 67, 95, 387, 390, 619, 684, 820
BlsI GCNGC 7 cut(s) 68, 96, 388, 391, 620, 685, 821
Bme1390I CCNGG 4 cut(s) 129, 790, 1053, 1078
Bme18I GGWCC 1 cut(s) 987
BmeRI GACNNNNNGTC 1 cut(s) 198
BmgT120I GGNCC 4 cut(s) 17, 18, 987, 1055
BmiI GGNNCC 4 cut(s) 18, 19, 988, 1075
BmrFI CCNGG 4 cut(s) 129, 790, 1053, 1078
BmrI ACTGGG 1 cut(s) 945
BmsI GCATC 3 cut(s) 78, 874, 1053
BmuI ACTGGG 1 cut(s) 945
BpiI GAAGAC 1 cut(s) 396
Bpu14I TTCGAA 2 cut(s) 425, 801
BpuMI CCSGG 2 cut(s) 129, 1053
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 7 cut(s) 675, 788, 924, 982, 1037, 1058, 1077
BsaXI ACNNNNNCTCC 2 cut(s) 903, 933
Bsc4I CCNNNNNNNGG 5 cut(s) 98, 514, 794, 1052, 1059
Bse1I ACTGG 2 cut(s) 199, 940
Bse21I CCTNAGG 1 cut(s) 513
BseBI CCWGG 2 cut(s) 790, 1078
BseDI CCNNGG 7 cut(s) 675, 788, 924, 982, 1037, 1058, 1077
BseGI GGATG 5 cut(s) 172, 363, 451, 913, 1068
BseLI CCNNNNNNNGG 5 cut(s) 98, 514, 794, 1052, 1059
BseMII CTCAG 5 cut(s) 135, 198, 504, 798, 1100
BseNI ACTGG 2 cut(s) 199, 940
BseRI GAGGAG 3 cut(s) 130, 731, 866
BseSI GKGCMC 2 cut(s) 21, 491
BseXI GCAGC 3 cut(s) 376, 398, 670
Bsh1236I CGCG 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 133
BshFI GGCC 3 cut(s) 19, 1019, 1056
BsiEI CGRYCG 1 cut(s) 133
BsiHKAI GWGCWC 2 cut(s) 491, 1115
BsiSI CCGG 2 cut(s) 129, 1053
BslFI GGGAC 2 cut(s) 205, 1000
BslI CCNNNNNNNGG 5 cut(s) 98, 514, 794, 1052, 1059
BsmAI GTCTC 2 cut(s) 206, 840
BsmBI CGTCTC 1 cut(s) 840
BsmFI GGGAC 2 cut(s) 205, 1000
BsnI GGCC 3 cut(s) 19, 1019, 1056
Bso31I GGTCTC 1 cut(s) 206
Bsp119I TTCGAA 2 cut(s) 425, 801
Bsp120I GGGCCC 1 cut(s) 17
Bsp1286I GDGCHC 3 cut(s) 21, 491, 1115
Bsp1407I TGTACA 1 cut(s) 576
Bsp143I GATC 6 cut(s) 122, 178, 211, 478, 517, 835
BspANI GGCC 3 cut(s) 19, 1019, 1056
BspCNI CTCAG 5 cut(s) 136, 199, 505, 799, 1101
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 4 cut(s) 18, 19, 988, 1075
BspMI ACCTGC 1 cut(s) 226
BspPI GGATC 4 cut(s) 130, 219, 473, 525
BspT104I TTCGAA 2 cut(s) 425, 801
BspTI CTTAAG 1 cut(s) 536
BspTNI GGTCTC 1 cut(s) 206
BsrGI TGTACA 1 cut(s) 576
BsrI ACTGG 2 cut(s) 199, 940
BssECI CCNNGG 7 cut(s) 675, 788, 924, 982, 1037, 1058, 1077
BssMI GATC 6 cut(s) 122, 178, 211, 478, 517, 835
BssNAI GTATAC 1 cut(s) 545
BssNI GRCGYC 1 cut(s) 75
BssT1I CCWWGG 3 cut(s) 924, 1037, 1058
Bst1107I GTATAC 1 cut(s) 545
Bst2UI CCWGG 2 cut(s) 790, 1078
Bst4CI ACNGT 7 cut(s) 25, 55, 101, 493, 676, 865, 983
Bst6I CTCTTC 3 cut(s) 6, 806, 897
BstACI GRCGYC 1 cut(s) 75
BstAFI CTTAAG 1 cut(s) 536
BstAUI TGTACA 1 cut(s) 576
BstBI TTCGAA 2 cut(s) 425, 801
BstC8I GCNNGC 3 cut(s) 270, 654, 737
BstDEI CTNAG 6 cut(s) 144, 207, 513, 627, 807, 1109
BstDSI CCRYGG 2 cut(s) 675, 982
BstENI CCTNNNNNAGG 1 cut(s) 512
BstF5I GGATG 5 cut(s) 172, 363, 451, 913, 1068
BstFNI CGCG 1 cut(s) 135
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 6 cut(s) 125, 181, 214, 481, 520, 838
BstMAI GTCTC 2 cut(s) 206, 840
BstMBI GATC 6 cut(s) 122, 178, 211, 478, 517, 835
BstMCI CGRYCG 1 cut(s) 133
BstMWI GCNNNNNNNGC 2 cut(s) 692, 745
BstNI CCWGG 2 cut(s) 790, 1078
BstNSI RCATGY 4 cut(s) 66, 596, 656, 739
BstSCI CCNGG 4 cut(s) 127, 788, 1051, 1076
BstSLI GKGCMC 2 cut(s) 21, 491
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 3 cut(s) 376, 398, 670
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 3 cut(s) 122, 211, 478
BstYI RGATCY 3 cut(s) 122, 211, 478
BstZ17I GTATAC 1 cut(s) 545
Bsu36I CCTNAGG 1 cut(s) 513
BsuRI GGCC 3 cut(s) 19, 1019, 1056
BtgI CCRYGG 2 cut(s) 675, 982
BtgZI GCGATG 1 cut(s) 270
BtsCI GGATG 5 cut(s) 172, 363, 451, 913, 1068
BtsIMutI CAGTG 2 cut(s) 489, 531
BveI ACCTGC 1 cut(s) 226
Cac8I GCNNGC 3 cut(s) 270, 654, 737
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 4 cut(s) 17, 18, 987, 1055
CseI GACGC 1 cut(s) 83
Csp6I GTAC 2 cut(s) 577, 856
CviAII CATG 5 cut(s) 63, 593, 653, 736, 1004
CviQI GTAC 2 cut(s) 577, 856
DdeI CTNAG 6 cut(s) 144, 207, 513, 627, 807, 1109
DpnI GATC 6 cut(s) 124, 180, 213, 480, 519, 837
DpnII GATC 6 cut(s) 122, 178, 211, 478, 517, 835
DraI TTTAAA 1 cut(s) 708
DrdI GACNNNNNNGTC 1 cut(s) 695
DriI GACNNNNNGTC 1 cut(s) 198
DseDI GACNNNNNNGTC 1 cut(s) 695
EaeI YGGCCR 1 cut(s) 1017
Eam1104I CTCTTC 3 cut(s) 6, 806, 897
Eam1105I GACNNNNNGTC 1 cut(s) 198
EarI CTCTTC 3 cut(s) 6, 806, 897
EciI GGCGGA 2 cut(s) 81, 1117
Eco130I CCWWGG 3 cut(s) 924, 1037, 1058
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 206
Eco32I GATATC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 987
Eco81I CCTNAGG 1 cut(s) 513
EcoNI CCTNNNNNAGG 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 2 cut(s) 788, 1076
EcoRV GATATC 1 cut(s) 109
EcoT14I CCWWGG 3 cut(s) 924, 1037, 1058
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 3 cut(s) 924, 1037, 1058
Esp3I CGTCTC 1 cut(s) 840
FaeI CATG 5 cut(s) 66, 596, 656, 739, 1007
FaqI GGGAC 2 cut(s) 205, 1000
FatI CATG 5 cut(s) 62, 592, 652, 735, 1003
FauI CCCGC 3 cut(s) 43, 277, 732
FbaI TGATCA 2 cut(s) 178, 835
FblI GTMKAC 2 cut(s) 544, 608
Fnu4HI GCNGC 7 cut(s) 67, 95, 387, 390, 619, 684, 820
FokI GGATG 5 cut(s) 179, 350, 438, 920, 1075
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 7 cut(s) 67, 95, 387, 390, 619, 684, 820
GlaI GCGC 1 cut(s) 136
GluI GCNGC 7 cut(s) 67, 95, 387, 390, 619, 684, 820
HaeIII GGCC 3 cut(s) 19, 1019, 1056
HapII CCGG 2 cut(s) 129, 1053
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 5 cut(s) 66, 596, 656, 739, 1007
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 6 cut(s) 148, 401, 448, 803, 1083, 1105
HpaII CCGG 2 cut(s) 129, 1053
HphI GGTGA 5 cut(s) 19, 105, 451, 563, 754
Hpy166II GTNNAC 3 cut(s) 489, 545, 609
Hpy188I TCNGA 6 cut(s) 106, 145, 166, 208, 808, 1110
Hpy188III TCNNGA 1 cut(s) 966
Hpy8I GTNNAC 3 cut(s) 489, 545, 609
Hpy99I CGWCG 2 cut(s) 77, 166
HpyAV CCTTC 5 cut(s) 305, 430, 467, 787, 963
HpyCH4III ACNGT 7 cut(s) 25, 55, 101, 493, 676, 865, 983
HpyCH4V TGCA 5 cut(s) 392, 489, 596, 652, 887
HpyF10VI GCNNNNNNNGC 2 cut(s) 692, 745
HpyF3I CTNAG 6 cut(s) 144, 207, 513, 627, 807, 1109
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 5 cut(s) 66, 596, 656, 739, 1007
HspAI GCGC 1 cut(s) 135
Ksp22I TGATCA 2 cut(s) 178, 835
Kzo9I GATC 6 cut(s) 122, 178, 211, 478, 517, 835
Lsp1109I GCAGC 3 cut(s) 376, 398, 670
LweI GCATC 3 cut(s) 78, 874, 1053
MaeIII GTNAC 2 cut(s) 25, 697
MalI GATC 6 cut(s) 124, 180, 213, 480, 519, 837
MboI GATC 6 cut(s) 122, 178, 211, 478, 517, 835
MboII GAAGA 6 cut(s) 23, 235, 396, 445, 823, 914
MfeI CAATTG 1 cut(s) 894
MflI RGATCY 3 cut(s) 122, 211, 478
MhlI GDGCHC 3 cut(s) 21, 491, 1115
MluCI AATT 3 cut(s) 324, 373, 894
MlyI GAGTC 2 cut(s) 410, 1099
MmeI TCCRAC 2 cut(s) 100, 144
MroXI GAANNNNTTC 1 cut(s) 797
MseI TTAA 5 cut(s) 231, 297, 464, 537, 707
MslI CAYNNNNRTG 2 cut(s) 740, 882
MspA1I CMGCKG 2 cut(s) 272, 389
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 2 cut(s) 129, 1053
MspR9I CCNGG 4 cut(s) 129, 790, 1053, 1078
MunI CAATTG 1 cut(s) 894
MvaI CCWGG 2 cut(s) 790, 1078
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 692, 745
NciI CCSGG 2 cut(s) 129, 1053
NdeII GATC 6 cut(s) 122, 178, 211, 478, 517, 835
NlaIII CATG 5 cut(s) 66, 596, 656, 739, 1007
NlaIV GGNNCC 4 cut(s) 18, 19, 988, 1075
NmuCI GTSAC 2 cut(s) 25, 697
NspI RCATGY 4 cut(s) 66, 596, 656, 739
NspV TTCGAA 2 cut(s) 425, 801
PaeI GCATGC 2 cut(s) 656, 739
PaqCI CACCTGC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 797
PfeI GAWTC 4 cut(s) 148, 448, 803, 1083
PkrI GCNGC 7 cut(s) 68, 96, 388, 391, 620, 685, 821
PleI GAGTC 2 cut(s) 409, 1099
PpsI GAGTC 2 cut(s) 409, 1099
Psp6I CCWGG 2 cut(s) 788, 1076
PspGI CCWGG 2 cut(s) 788, 1076
PspN4I GGNNCC 4 cut(s) 18, 19, 988, 1075
PspOMI GGGCCC 1 cut(s) 17
PspPI GGNCC 4 cut(s) 17, 18, 987, 1055
PsuI RGATCY 3 cut(s) 122, 211, 478
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 2 cut(s) 578, 857
RsaNI GTAC 2 cut(s) 577, 856
RseI CAYNNNNRTG 2 cut(s) 740, 882
SaqAI TTAA 5 cut(s) 231, 297, 464, 537, 707
SatI GCNGC 7 cut(s) 67, 95, 387, 390, 619, 684, 820
Sau3AI GATC 6 cut(s) 122, 178, 211, 478, 517, 835
Sau96I GGNCC 4 cut(s) 17, 18, 987, 1055
SchI GAGTC 2 cut(s) 410, 1099
ScrFI CCNGG 4 cut(s) 129, 790, 1053, 1078
SduI GDGCHC 3 cut(s) 21, 491, 1115
SfaNI GCATC 3 cut(s) 78, 874, 1053
SfuI TTCGAA 2 cut(s) 425, 801
SinI GGWCC 1 cut(s) 987
SmiMI CAYNNNNRTG 2 cut(s) 740, 882
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
SphI GCATGC 2 cut(s) 656, 739
Sse9I AATT 3 cut(s) 324, 373, 894
SspI AATATT 1 cut(s) 245
StyD4I CCNGG 4 cut(s) 127, 788, 1051, 1076
StyI CCWWGG 3 cut(s) 924, 1037, 1058
TaaI ACNGT 7 cut(s) 25, 55, 101, 493, 676, 865, 983
TaqI TCGA 4 cut(s) 72, 425, 801, 949
TasI AATT 3 cut(s) 324, 373, 894
TatI WGTACW 1 cut(s) 576
TauI GCSGC 4 cut(s) 69, 97, 621, 822
TfiI GAWTC 4 cut(s) 148, 448, 803, 1083
Tru1I TTAA 5 cut(s) 231, 297, 464, 537, 707
Tru9I TTAA 5 cut(s) 231, 297, 464, 537, 707
TscAI CASTG 2 cut(s) 496, 531
TseFI GTSAC 2 cut(s) 25, 697
TseI GCWGC 3 cut(s) 386, 389, 683
Tsp45I GTSAC 2 cut(s) 25, 697
TspDTI ATGAA 4 cut(s) 273, 368, 440, 915
TspGWI ACGGA 3 cut(s) 460, 904, 1086
TspRI CASTG 2 cut(s) 496, 531
Vha464I CTTAAG 1 cut(s) 536
VneI GTGCAC 1 cut(s) 487
VpaK11BI GGWCC 1 cut(s) 987
XagI CCTNNNNNAGG 1 cut(s) 512
XceI RCATGY 4 cut(s) 66, 596, 656, 739
XmiI GTMKAC 2 cut(s) 544, 608
XmnI GAANNNNTTC 1 cut(s) 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.