Prupe.1G274200_v2.0.a1

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008795
Physical Location & Seq
Forward (+)
28026980 .. 28033168
6189 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G274200.1

Sequence Viewer

Length: 633 bp
ATGGTTGCGTTAAACGTACACCGACCCGACCCGATCATAAATAATGCCTCAGCTACATCGAGGGTGGTTCAATTGGAAAAAACACCAGTTCGCACCTATTCTAATAACTGTTCGAAGTGTGCAGGTCTCCTCCAGAAAACATTACGACCCGGAAACAAGCCCTGTTCTCTTCTCATCGGGACTTCGTTGGAGTTGCTGAGAGAAGGAAAACCATTGATCAGCCCCACACCCTTCCCCTTCATCGCAGCGGCGCCCCCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTTCATTTCTCTCTCTCCGCCACCGCCACCGTCATCATCACGAGCACCGACTCTCTCCTACCATCTCCGATGGACGGTTCTGATGCCTCACCCGTTGGATCTCCCGATCGCGCCTCCTCTGAGATTCAACGACAGCCGTCCGACGATGACGTGATCAATCTTCTGGGACCGGCGGTCTCTCCGAGGATCTCAAACAAAAAATTATTAAGCAGGTCTGAGCATGAGGACAAAGGTGATTTTGCAATCTCACCAAAGCATTTCAAAGTTGCTTGGGTGAAGTTGATGACTGTGTGCATTGCAGTACTACAACAACAAAATAGCGCAATTACATCTATCCATGGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La RRM_1

Protein Analysis

211

Amino Acids

22.42

Weight (kDa)

8.98

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 113, 486
AccB1I GGYRCC 1 cut(s) 250
AccII CGCG 1 cut(s) 396
AciI CCGC 4 cut(s) 248, 303, 309, 458
AclWI GGATC 2 cut(s) 391, 479
AcyI GRCGYC 1 cut(s) 251
AfaI GTAC 2 cut(s) 18, 588
AfiI CCNNNNNNNGG 1 cut(s) 359
AgsI TTSAA 3 cut(s) 71, 413, 547
AhdI GACNNNNNGTC 1 cut(s) 458
AjiI CACGTC 1 cut(s) 436
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 2 cut(s) 131, 466
AlwI GGATC 2 cut(s) 391, 479
ApeKI GCWGC 1 cut(s) 245
AspLEI GCGC 3 cut(s) 253, 398, 608
AspS9I GGNCC 1 cut(s) 452
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 4 cut(s) 366, 525, 530, 571
AsuII TTCGAA 1 cut(s) 113
AvaII GGWCC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 250
BauI CACGAG 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 332
BbvCI CCTCAGC 1 cut(s) 49
BbvI GCAGC 1 cut(s) 257
BccI CCATC 2 cut(s) 349, 355
BceAI ACGGC 1 cut(s) 406
BclI TGATCA 2 cut(s) 216, 438
BcnI CCSGG 1 cut(s) 150
BcoDI GTCTC 2 cut(s) 131, 466
BfoI RGCGCY 1 cut(s) 254
BfuAI ACCTGC 2 cut(s) 113, 486
BisI GCNGC 2 cut(s) 246, 249
BlsI GCNGC 2 cut(s) 247, 250
BmcAI AGTACT 1 cut(s) 588
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 1 cut(s) 452
BmeRI GACNNNNNGTC 1 cut(s) 458
BmgBI CACGTC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 452
BmiI GGNNCC 2 cut(s) 252, 453
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 1 cut(s) 358
BoxI GACNNNNGTC 1 cut(s) 421
BpmI CTGGAG 1 cut(s) 116
Bpu10I CCTNAGC 1 cut(s) 49
Bpu14I TTCGAA 1 cut(s) 113
BpuMI CCSGG 1 cut(s) 150
BsaHI GRCGYC 1 cut(s) 251
BsaI GGTCTC 2 cut(s) 131, 466
BsaJI CCNNGG 2 cut(s) 467, 622
Bsc4I CCNNNNNNNGG 1 cut(s) 359
Bse118I RCCGGY 1 cut(s) 454
Bse1I ACTGG 1 cut(s) 86
Bse3DI GCAATG 1 cut(s) 579
BseDI CCNNGG 2 cut(s) 467, 622
BseLI CCNNNNNNNGG 1 cut(s) 359
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 4 cut(s) 63, 188, 396, 492
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 2 cut(s) 119, 391
BseXI GCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 396
Bsh1285I CGRYCG 1 cut(s) 394
BshNI GGYRCC 1 cut(s) 250
BsiEI CGRYCG 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 332
BsiSI CCGG 2 cut(s) 150, 455
BslFI GGGAC 2 cut(s) 193, 465
BslI CCNNNNNNNGG 1 cut(s) 359
BsmAI GTCTC 2 cut(s) 131, 466
BsmFI GGGAC 2 cut(s) 193, 465
Bso31I GGTCTC 2 cut(s) 131, 466
Bsp119I TTCGAA 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 6 cut(s) 33, 216, 383, 391, 438, 471
Bsp19I CCATGG 1 cut(s) 622
BspACI CCGC 4 cut(s) 248, 303, 309, 458
BspCNI CTCAG 4 cut(s) 62, 189, 397, 493
BspFNI CGCG 1 cut(s) 396
BspLI GGNNCC 2 cut(s) 252, 453
BspMI ACCTGC 2 cut(s) 113, 486
BspPI GGATC 2 cut(s) 391, 479
BspT104I TTCGAA 1 cut(s) 113
BspT107I GGYRCC 1 cut(s) 250
BspTNI GGTCTC 2 cut(s) 131, 466
BsrDI GCAATG 1 cut(s) 579
BsrFI RCCGGY 1 cut(s) 454
BsrI ACTGG 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 454
BssECI CCNNGG 2 cut(s) 467, 622
BssMI GATC 6 cut(s) 33, 216, 383, 391, 438, 471
BssNI GRCGYC 1 cut(s) 251
BssSI CACGAG 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 622
Bst2BI CACGAG 1 cut(s) 325
Bst4CI ACNGT 4 cut(s) 110, 316, 362, 574
Bst6I CTCTTC 2 cut(s) 174, 291
BstACI GRCGYC 1 cut(s) 251
BstBI TTCGAA 1 cut(s) 113
BstDEI CTNAG 4 cut(s) 49, 197, 405, 501
BstDSI CCRYGG 1 cut(s) 622
BstFNI CGCG 1 cut(s) 396
BstH2I RGCGCY 1 cut(s) 254
BstHHI GCGC 3 cut(s) 253, 398, 608
BstKTI GATC 6 cut(s) 36, 219, 386, 394, 441, 474
BstMAI GTCTC 2 cut(s) 131, 466
BstMBI GATC 6 cut(s) 33, 216, 383, 391, 438, 471
BstMCI CGRYCG 1 cut(s) 394
BstPAI GACNNNNGTC 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 148
BstUI CGCG 1 cut(s) 396
BstV1I GCAGC 1 cut(s) 257
BstX2I RGATCY 2 cut(s) 383, 471
BstYI RGATCY 2 cut(s) 383, 471
BtgI CCRYGG 1 cut(s) 622
BtgZI GCGATG 1 cut(s) 226
BtrI CACGTC 1 cut(s) 436
BveI ACCTGC 2 cut(s) 113, 486
CfoI GCGC 3 cut(s) 253, 398, 608
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 1 cut(s) 452
Csp6I GTAC 2 cut(s) 17, 587
CviAII CATG 2 cut(s) 506, 623
CviJI RGCY 4 cut(s) 53, 160, 222, 421
CviKI_1 RGCY 4 cut(s) 53, 160, 222, 421
CviQI GTAC 2 cut(s) 17, 587
DdeI CTNAG 4 cut(s) 49, 197, 405, 501
DinI GGCGCC 1 cut(s) 252
DpnI GATC 6 cut(s) 35, 218, 385, 393, 440, 473
DpnII GATC 6 cut(s) 33, 216, 383, 391, 438, 471
DriI GACNNNNNGTC 1 cut(s) 458
Eam1104I CTCTTC 2 cut(s) 174, 291
Eam1105I GACNNNNNGTC 1 cut(s) 458
EarI CTCTTC 2 cut(s) 174, 291
EciI GGCGGA 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 622
Eco31I GGTCTC 2 cut(s) 131, 466
Eco47I GGWCC 1 cut(s) 452
EcoT14I CCWWGG 1 cut(s) 622
EgeI GGCGCC 1 cut(s) 252
EheI GGCGCC 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 622
FaeI CATG 2 cut(s) 509, 626
FaiI YATR 3 cut(s) 38, 507, 624
FaqI GGGAC 2 cut(s) 193, 465
FatI CATG 2 cut(s) 505, 622
FbaI TGATCA 2 cut(s) 216, 438
Fnu4HI GCNGC 2 cut(s) 246, 249
Fsp4HI GCNGC 2 cut(s) 246, 249
GlaI GCGC 3 cut(s) 252, 397, 607
GluI GCNGC 2 cut(s) 246, 249
GsuI CTGGAG 1 cut(s) 116
HaeII RGCGCY 1 cut(s) 254
HapII CCGG 2 cut(s) 150, 455
HhaI GCGC 3 cut(s) 253, 398, 608
Hin1I GRCGYC 1 cut(s) 251
Hin1II CATG 2 cut(s) 509, 626
Hin6I GCGC 3 cut(s) 251, 396, 606
HinP1I GCGC 3 cut(s) 251, 396, 606
HinfI GANTC 2 cut(s) 335, 409
HpaII CCGG 2 cut(s) 150, 455
HphI GGTGA 4 cut(s) 366, 525, 530, 571
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 6 cut(s) 354, 367, 406, 427, 468, 502
Hpy188III TCNNGA 4 cut(s) 133, 178, 325, 389
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 431
HpyAV CCTTC 4 cut(s) 197, 241, 247, 269
HpyCH4III ACNGT 4 cut(s) 110, 316, 362, 574
HpyCH4IV ACGT 2 cut(s) 15, 435
HpyCH4V TGCA 4 cut(s) 122, 527, 579, 584
HpyF3I CTNAG 4 cut(s) 49, 197, 405, 501
HpySE526I ACGT 2 cut(s) 15, 435
Hsp92I GRCGYC 1 cut(s) 251
Hsp92II CATG 2 cut(s) 509, 626
HspAI GCGC 3 cut(s) 251, 396, 606
KasI GGCGCC 1 cut(s) 250
Ksp22I TGATCA 2 cut(s) 216, 438
Kzo9I GATC 6 cut(s) 33, 216, 383, 391, 438, 471
LpnPI CCDG 8 cut(s) 99, 108, 146, 163, 175, 434, 468, 481
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 1 cut(s) 358
MaeII ACGT 2 cut(s) 15, 435
MalI GATC 6 cut(s) 35, 218, 385, 393, 440, 473
MboI GATC 6 cut(s) 33, 216, 383, 391, 438, 471
MboII GAAGA 3 cut(s) 161, 278, 437
MfeI CAATTG 1 cut(s) 71
MflI RGATCY 2 cut(s) 383, 471
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 3 cut(s) 71, 485, 609
Mly113I GGCGCC 1 cut(s) 251
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 3 cut(s) 168, 361, 450
MnlI CCTC 8 cut(s) 54, 58, 140, 382, 409, 412, 462, 502
MseI TTAA 2 cut(s) 11, 491
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 150, 455
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 71
MvnI CGCG 1 cut(s) 396
NarI GGCGCC 1 cut(s) 251
NciI CCSGG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 622
NdeII GATC 6 cut(s) 33, 216, 383, 391, 438, 471
NlaIII CATG 2 cut(s) 509, 626
NlaIV GGNNCC 2 cut(s) 252, 453
NspV TTCGAA 1 cut(s) 113
PfeI GAWTC 1 cut(s) 409
PkrI GCNGC 2 cut(s) 247, 250
Ple19I CGATCG 1 cut(s) 394
PleI GAGTC 1 cut(s) 329
PluTI GGCGCC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 329
PshAI GACNNNNGTC 1 cut(s) 421
PspN4I GGNNCC 2 cut(s) 252, 453
PspPI GGNCC 1 cut(s) 452
PsuI RGATCY 2 cut(s) 383, 471
PvuI CGATCG 1 cut(s) 394
RsaI GTAC 2 cut(s) 18, 588
RsaNI GTAC 2 cut(s) 17, 587
SaqAI TTAA 2 cut(s) 11, 491
SatI GCNGC 2 cut(s) 246, 249
Sau3AI GATC 6 cut(s) 33, 216, 383, 391, 438, 471
Sau96I GGNCC 1 cut(s) 452
ScaI AGTACT 1 cut(s) 588
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 332
SetI ASST 7 cut(s) 18, 55, 98, 127, 438, 500, 520
SfaNI GCATC 1 cut(s) 358
SfoI GGCGCC 1 cut(s) 252
SfuI TTCGAA 1 cut(s) 113
SinI GGWCC 1 cut(s) 452
Sse9I AATT 3 cut(s) 71, 485, 609
SsiI CCGC 4 cut(s) 248, 303, 309, 458
SspDI GGCGCC 1 cut(s) 250
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 1 cut(s) 622
TaaI ACNGT 4 cut(s) 110, 316, 362, 574
TaiI ACGT 2 cut(s) 18, 438
TaqI TCGA 2 cut(s) 59, 113
TasI AATT 3 cut(s) 71, 485, 609
TatI WGTACW 1 cut(s) 586
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 2 cut(s) 11, 491
Tru9I TTAA 2 cut(s) 11, 491
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 229, 278
VpaK11BI GGWCC 1 cut(s) 452
ZrmI AGTACT 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.