Rh5BG104500

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0008795
Physical Location & Seq
Reverse (-)
9617707 .. 9622295
4589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG104500.1

Sequence Viewer

Length: 780 bp
ATGAAAAAGCTTATTCGAAACAACTCGTTAATAGTGGCTGCTTTGAAGGACTCTTCCCTCCTTGTTGTGAGTTTGAATGGGAAGAAGGTGAAACGACTTCATCCTCTACCATTACCTGAAACAAGGGATCCAAAGTTCACTGTTTTGGTAGAGAATCTACCAACTGATCATTCAGTGGAGAACCTTAAGAAAATGTTTAGCGAAGCTGGAAATATAAAGGATATATGCATACTTGACCCAAGTGCCATAGAGGCATCTGCAAAAGGCGGCAAGGTTGAGAAGCCAATCAGTAATAAGTTGCATGCTCTTGTAGAGTATGATACCGTGGAGGCTACTGAGAAAGCTGTTGCTATTTTAAACAATGAGGAAGATTGGAGAAATGGCATGCGGGTGAAGCTTCTTAAGCAGATGGGTAAGTACGGGCAGAGTGGACAGAGAAGACAATCCCGCAGGGGCTTTGATTTGGAGAAGAGTAGCAGTAGTCGAACGTCTGAAACAGGGATCGAGGAGACTCATAATGCGAACGAACATCACAATGGTACACCTGACGAAGAGGATGGAGGAGACCAAGTGCCCAAGGAGAAAACTGGGCACAGGGGTCGAAGTCGAGGGCAATCTGGTAGGCAGAAGTATCGTGGCCTCAATGGTTTTGGCCACGGAACTACTTCATCTAGTCATCCAATTGAACCTTCAAAGCCACCACCTGGCCCTAGAATGCCTGATGGAACTAGGGGATTCACAATGGGACGGGGCCGGACTCCAGTGCCGAATCAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La RRM_1

Protein Analysis

259

Amino Acids

28.48

Weight (kDa)

9.66

Isoelectric Point (pI)

51.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 704
AciI CCGC 3 cut(s) 267, 388, 448
AclWI GGATC 3 cut(s) 122, 135, 509
AcoI YGGCCR 1 cut(s) 652
AfaI GTAC 2 cut(s) 419, 541
AfiI CCNNNNNNNGG 1 cut(s) 704
AflII CTTAAG 2 cut(s) 185, 401
AgsI TTSAA 4 cut(s) 46, 76, 686, 693
AjnI CCWGG 1 cut(s) 703
AjuI GAANNNNNNNTTGG 4 cut(s) 154, 186, 673, 705
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 4 cut(s) 10, 206, 344, 397
AluI AGCT 4 cut(s) 10, 206, 344, 397
Alw26I GTCTC 2 cut(s) 503, 558
AlwI GGATC 3 cut(s) 122, 135, 509
AoxI GGCC 4 cut(s) 637, 652, 706, 751
ApeKI GCWGC 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 664
AspS9I GGNCC 2 cut(s) 707, 751
AsuHPI GGTGA 2 cut(s) 100, 403
AsuII TTCGAA 1 cut(s) 16
BaeGI GKGCMC 2 cut(s) 576, 594
BalI TGGCCA 1 cut(s) 654
BamHI GGATCC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 445
BbvI GCAGC 1 cut(s) 25
BccI CCATC 3 cut(s) 403, 551, 716
BcgI CGANNNNNNTGC 4 cut(s) 581, 614, 615, 648
BciT130I CCWGG 1 cut(s) 705
BclI TGATCA 1 cut(s) 166
BcoDI GTCTC 2 cut(s) 503, 558
BfaI CTAG 3 cut(s) 672, 711, 729
BfrI CTTAAG 2 cut(s) 185, 401
BglI GCCNNNNNGGC 1 cut(s) 251
BisI GCNGC 2 cut(s) 39, 268
BlsI GCNGC 2 cut(s) 40, 269
Bme1390I CCNGG 1 cut(s) 705
BmgT120I GGNCC 2 cut(s) 707, 751
BmiI GGNNCC 2 cut(s) 129, 752
BmrFI CCNGG 1 cut(s) 705
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 1 cut(s) 263
BmuI ACTGGG 1 cut(s) 597
BpiI GAAGAC 1 cut(s) 445
BpmI CTGGAG 1 cut(s) 744
Bpu14I TTCGAA 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 558
BsaJI CCNNGG 3 cut(s) 324, 576, 655
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 1 cut(s) 704
Bse1I ACTGG 2 cut(s) 592, 761
BseBI CCWGG 1 cut(s) 705
BseDI CCNNGG 3 cut(s) 324, 576, 655
BseGI GGATG 3 cut(s) 100, 562, 676
BseLI CCNNNNNNNGG 1 cut(s) 704
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 2 cut(s) 592, 761
BseRI GAGGAG 2 cut(s) 521, 576
BseSI GKGCMC 2 cut(s) 576, 594
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 4 cut(s) 639, 654, 708, 753
BsiSI CCGG 1 cut(s) 754
BslFI GGGAC 1 cut(s) 759
BslI CCNNNNNNNGG 1 cut(s) 704
BsmAI GTCTC 2 cut(s) 503, 558
BsmFI GGGAC 1 cut(s) 759
BsmI GAATGC 1 cut(s) 720
BsnI GGCC 4 cut(s) 639, 654, 708, 753
Bso31I GGTCTC 1 cut(s) 558
Bsp119I TTCGAA 1 cut(s) 16
Bsp1286I GDGCHC 2 cut(s) 576, 594
Bsp143I GATC 3 cut(s) 127, 166, 501
BspACI CCGC 3 cut(s) 267, 388, 448
BspANI GGCC 4 cut(s) 639, 654, 708, 753
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 129, 752
BspPI GGATC 3 cut(s) 122, 135, 509
BspT104I TTCGAA 1 cut(s) 16
BspTI CTTAAG 2 cut(s) 185, 401
BspTNI GGTCTC 1 cut(s) 558
BsrI ACTGG 2 cut(s) 592, 761
BssECI CCNNGG 3 cut(s) 324, 576, 655
BssMI GATC 3 cut(s) 127, 166, 501
BssT1I CCWWGG 1 cut(s) 576
Bst2UI CCWGG 1 cut(s) 705
Bst4CI ACNGT 2 cut(s) 142, 325
Bst6I CTCTTC 3 cut(s) 58, 464, 546
BstAFI CTTAAG 2 cut(s) 185, 401
BstBI TTCGAA 1 cut(s) 16
BstC8I GCNNGC 2 cut(s) 303, 386
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 2 cut(s) 324, 655
BstF5I GGATG 3 cut(s) 100, 562, 676
BstKTI GATC 3 cut(s) 130, 169, 504
BstMAI GTCTC 2 cut(s) 503, 558
BstMBI GATC 3 cut(s) 127, 166, 501
BstMWI GCNNNNNNNGC 3 cut(s) 251, 394, 403
BstNI CCWGG 1 cut(s) 705
BstNSI RCATGY 2 cut(s) 305, 388
BstSCI CCNGG 1 cut(s) 703
BstSLI GKGCMC 2 cut(s) 576, 594
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 445
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BsuRI GGCC 4 cut(s) 639, 654, 708, 753
BtgI CCRYGG 2 cut(s) 324, 655
BtsCI GGATG 3 cut(s) 100, 562, 676
BtsIMutI CAGTG 3 cut(s) 138, 180, 768
Cac8I GCNNGC 2 cut(s) 303, 386
Cfr13I GGNCC 2 cut(s) 707, 751
Csp6I GTAC 2 cut(s) 418, 540
CviAII CATG 2 cut(s) 302, 385
CviQI GTAC 2 cut(s) 418, 540
DdeI CTNAG 1 cut(s) 336
DpnI GATC 3 cut(s) 129, 168, 503
DpnII GATC 3 cut(s) 127, 166, 501
DraI TTTAAA 1 cut(s) 357
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 3 cut(s) 58, 464, 546
EarI CTCTTC 3 cut(s) 58, 464, 546
Eco130I CCWWGG 1 cut(s) 576
Eco31I GGTCTC 1 cut(s) 558
EcoRII CCWGG 1 cut(s) 703
EcoT14I CCWWGG 1 cut(s) 576
EcoT22I ATGCAT 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 576
FaeI CATG 2 cut(s) 305, 388
FaiI YATR 9 cut(s) 215, 224, 226, 230, 248, 303, 318, 386, 516
FaqI GGGAC 1 cut(s) 759
FatI CATG 2 cut(s) 301, 384
FauI CCCGC 2 cut(s) 381, 455
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 2 cut(s) 39, 268
FokI GGATG 3 cut(s) 87, 569, 663
Fsp4HI GCNGC 2 cut(s) 39, 268
FspBI CTAG 3 cut(s) 672, 711, 729
GluI GCNGC 2 cut(s) 39, 268
GsuI CTGGAG 1 cut(s) 744
HaeIII GGCC 4 cut(s) 639, 654, 708, 753
HapII CCGG 1 cut(s) 754
Hin1II CATG 2 cut(s) 305, 388
HindIII AAGCTT 2 cut(s) 8, 395
HinfI GANTC 6 cut(s) 50, 154, 511, 735, 757, 769
HpaII CCGG 1 cut(s) 754
HphI GGTGA 2 cut(s) 100, 403
Hpy166II GTNNAC 3 cut(s) 138, 431, 542
Hpy188I TCNGA 2 cut(s) 493, 774
Hpy8I GTNNAC 3 cut(s) 138, 431, 542
HpyAV CCTTC 3 cut(s) 40, 79, 699
HpyCH4III ACNGT 2 cut(s) 142, 325
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 3 cut(s) 228, 260, 301
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 394, 403
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 488
Hsp92II CATG 2 cut(s) 305, 388
Ksp22I TGATCA 1 cut(s) 166
Kzo9I GATC 3 cut(s) 127, 166, 501
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 263
MaeI CTAG 3 cut(s) 672, 711, 729
MaeII ACGT 1 cut(s) 488
MalI GATC 3 cut(s) 129, 168, 503
MboI GATC 3 cut(s) 127, 166, 501
MboII GAAGA 6 cut(s) 45, 94, 380, 450, 481, 563
MfeI CAATTG 1 cut(s) 681
MflI RGATCY 1 cut(s) 127
MhlI GDGCHC 2 cut(s) 576, 594
MlsI TGGCCA 1 cut(s) 654
MluCI AATT 1 cut(s) 681
MluNI TGGCCA 1 cut(s) 654
MlyI GAGTC 3 cut(s) 44, 505, 751
Mox20I TGGCCA 1 cut(s) 654
Mph1103I ATGCAT 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 664
MscI TGGCCA 1 cut(s) 654
MseI TTAA 5 cut(s) 29, 186, 356, 402, 778
MslI CAYNNNNRTG 2 cut(s) 389, 534
Msp20I TGGCCA 1 cut(s) 654
MspCI CTTAAG 2 cut(s) 185, 401
MspI CCGG 1 cut(s) 754
MspR9I CCNGG 1 cut(s) 705
MunI CAATTG 1 cut(s) 681
Mva1269I GAATGC 1 cut(s) 720
MvaI CCWGG 1 cut(s) 705
MwoI GCNNNNNNNGC 3 cut(s) 251, 394, 403
NdeII GATC 3 cut(s) 127, 166, 501
NlaIII CATG 2 cut(s) 305, 388
NlaIV GGNNCC 2 cut(s) 129, 752
NsiI ATGCAT 1 cut(s) 230
NspI RCATGY 2 cut(s) 305, 388
NspV TTCGAA 1 cut(s) 16
PaeI GCATGC 2 cut(s) 305, 388
PctI GAATGC 1 cut(s) 720
PdmI GAANNNNTTC 1 cut(s) 664
PfeI GAWTC 3 cut(s) 154, 735, 769
PflMI CCANNNNNTGG 1 cut(s) 704
PkrI GCNGC 2 cut(s) 40, 269
PleI GAGTC 3 cut(s) 44, 505, 751
PpsI GAGTC 3 cut(s) 44, 505, 751
Psp6I CCWGG 1 cut(s) 703
PspGI CCWGG 1 cut(s) 703
PspN4I GGNNCC 2 cut(s) 129, 752
PspPI GGNCC 2 cut(s) 707, 751
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 2 cut(s) 419, 541
RsaNI GTAC 2 cut(s) 418, 540
RseI CAYNNNNRTG 2 cut(s) 389, 534
SaqAI TTAA 5 cut(s) 29, 186, 356, 402, 778
SatI GCNGC 2 cut(s) 39, 268
Sau3AI GATC 3 cut(s) 127, 166, 501
Sau96I GGNCC 2 cut(s) 707, 751
SchI GAGTC 3 cut(s) 44, 505, 751
ScrFI CCNGG 1 cut(s) 705
SduI GDGCHC 2 cut(s) 576, 594
SfaNI GCATC 1 cut(s) 263
SfuI TTCGAA 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 389, 534
SmlI CTYRAG 2 cut(s) 185, 401
SmoI CTYRAG 2 cut(s) 185, 401
SphI GCATGC 2 cut(s) 305, 388
Sse9I AATT 1 cut(s) 681
SsiI CCGC 3 cut(s) 267, 388, 448
SspMI CTAG 3 cut(s) 672, 711, 729
StyD4I CCNGG 1 cut(s) 703
StyI CCWWGG 1 cut(s) 576
TaaI ACNGT 2 cut(s) 142, 325
TaiI ACGT 1 cut(s) 491
TaqI TCGA 5 cut(s) 16, 484, 504, 601, 607
TasI AATT 1 cut(s) 681
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 3 cut(s) 154, 735, 769
Tru1I TTAA 5 cut(s) 29, 186, 356, 402, 778
Tru9I TTAA 5 cut(s) 29, 186, 356, 402, 778
TscAI CASTG 3 cut(s) 145, 180, 768
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 3 cut(s) 17, 89, 657
TspGWI ACGGA 1 cut(s) 672
TspRI CASTG 3 cut(s) 145, 180, 768
Van91I CCANNNNNTGG 1 cut(s) 704
Vha464I CTTAAG 2 cut(s) 185, 401
XceI RCATGY 2 cut(s) 305, 388
XmnI GAANNNNTTC 1 cut(s) 664
XspI CTAG 3 cut(s) 672, 711, 729
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.