MD10G1263100.v1.1

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0008795
Physical Location & Seq
Forward (+)
35747013 .. 35751267
4255 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1263100.v1.1.491

Sequence Viewer

Length: 1173 bp
ATGGAAGGCGAAGAGGGTCCCACCGTGACCACCGCCGCAACCGCAACCGCCGCGACCGCCACCGATGCAACCGCCACCGCCACCACCACCATCCCCACTGTCACCACATGCGGCACCGATTCCCCCCCACCATCCCCGCCGCACGATTCTGATGTCTCACCCGTTGGATCTCCCGATCGCGCCTCCTCTGAGATTCAACCACAGCCGTCTGATGATGACCCTGATCAATCGTCTGGGGCTGGCGTTCTCTCTGAGGATCTCAAACAGAAGATTATTAAACAGGTGGAGTATTATTTCAGCGATGAAAACTTGCCCACTGACAAGTATATGTCGAGTATGATTAAAAAGAACAAAGAAGGTTATGTTCCTATTTCAGTTGTTGCTTCTTTTAGAAAAATGAAGAAGCTCATTCAAAACAATTCGTCCATAGCGGATGCATTGAGGGAGTCTACCCTCCTTGTTGTGAGTTCGAATGGGAAGAAGGTGAAACGTATTCATCCCCTTCCTTCAACTGAAAACAGGGACCCAAAGTGCACTGTTTTGGTGGAGAACCTACCTGAGGATCATTCAGTGGAGAACCTTACGACTATATTTGGTGAAGCTGGAAAAATAAAAGATTTATGCATACTTGACCCACATGCATTAGAAGCGTCAACAAAAGGTGGCAAGACCGAGAAGCTAATTAGTAATAAGTTGCATGCCCTTGTGGAGTATGATACCGTGGAGGCTGCTGACAAAGCTGTCACTACTTTAAACAATGAGGGGGATTGGAGAAATGGCATGCGGGTGAAGCTTCTAAAGCAAGTGGGAAAGTATGGACAGAGAAAACAACCCTGGAGGGGTTTTGATTCTGAGAAGAATAGCGGCAACAGAAGTAATGATCAAACAGGAGACGAGGAGAATCATACTGTAAGTGAGAAACATAATGATGCACGGACAACTGATGAAGAGGACGGAGAGCGAGTTCCCAAAGAGAAAACTGGGCATAGAGGTCGAAATAGGGGGCAATCAGGAAGGCAAAAATACCGTGGGACCAATGGATTTGGTCATGGAACTACATCGGCCAATCACGGCATTGAACCCTCAAAGCCACCACCCGGCCCAAGGATGCCTGATGGAACCAGGGGATTCACAATGGGGCGAGGGCGGACTCCGAGCACCGCCCAGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La RRM_1

Protein Analysis

391

Amino Acids

42.25

Weight (kDa)

6.39

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 91 - 149 1.4e-25 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 740
AccB1I GGYRCC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 449
AccII CGCG 2 cut(s) 53, 180
AclWI GGATC 3 cut(s) 175, 264, 570
AcoI YGGCCR 1 cut(s) 1062
AfiI CCNNNNNNNGG 4 cut(s) 559, 839, 1097, 1104
AgsI TTSAA 4 cut(s) 197, 413, 510, 1079
AjnI CCWGG 2 cut(s) 833, 1121
AloI GAACNNNNNNTCC 2 cut(s) 948, 980
AluBI AGCT 5 cut(s) 406, 602, 679, 740, 793
AluI AGCT 5 cut(s) 406, 602, 679, 740, 793
Alw21I GWGCWC 2 cut(s) 536, 1160
Alw26I GTCTC 2 cut(s) 160, 885
Alw44I GTGCAC 1 cut(s) 532
AlwI GGATC 3 cut(s) 175, 264, 570
AoxI GGCC 2 cut(s) 1062, 1099
ApaLI GTGCAC 1 cut(s) 532
ApeKI GCWGC 1 cut(s) 728
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 4 cut(s) 17, 523, 1032, 1100
AsuC2I CCSGG 1 cut(s) 1098
AsuHPI GGTGA 5 cut(s) 94, 150, 496, 608, 799
AsuII TTCGAA 1 cut(s) 470
AvaII GGWCC 3 cut(s) 17, 523, 1032
AxyI CCTNAGG 1 cut(s) 558
BaeGI GKGCMC 1 cut(s) 536
BanI GGYRCC 1 cut(s) 113
Bbv12I GWGCWC 2 cut(s) 536, 1160
BbvI GCAGC 1 cut(s) 715
BccI CCATC 3 cut(s) 98, 139, 1109
BceAI ACGGC 2 cut(s) 190, 1087
BcgI CGANNNNNNTGC 2 cut(s) 974, 1008
BciT130I CCWGG 2 cut(s) 835, 1123
BclI TGATCA 2 cut(s) 223, 880
BcnI CCSGG 1 cut(s) 1098
BcoDI GTCTC 2 cut(s) 160, 885
BfaI CTAG 1 cut(s) 1171
BisI GCNGC 6 cut(s) 36, 51, 112, 140, 729, 865
BlsI GCNGC 6 cut(s) 37, 52, 113, 141, 730, 866
Bme1390I CCNGG 3 cut(s) 835, 1098, 1123
Bme18I GGWCC 3 cut(s) 17, 523, 1032
BmgT120I GGNCC 4 cut(s) 17, 523, 1032, 1100
BmiI GGNNCC 7 cut(s) 18, 19, 115, 524, 525, 1033, 1120
BmrFI CCNGG 3 cut(s) 835, 1098, 1123
BmrI ACTGGG 1 cut(s) 990
BmsI GCATC 4 cut(s) 55, 424, 919, 1098
BmuI ACTGGG 1 cut(s) 990
BpmI CTGGAG 1 cut(s) 856
Bpu14I TTCGAA 1 cut(s) 470
BpuMI CCSGG 1 cut(s) 1098
BsaJI CCNNGG 5 cut(s) 720, 833, 1027, 1103, 1122
BsaXI ACNNNNNCTCC 2 cut(s) 948, 978
Bsc4I CCNNNNNNNGG 4 cut(s) 559, 839, 1097, 1104
Bse1I ACTGG 1 cut(s) 985
Bse21I CCTNAGG 1 cut(s) 558
BseBI CCWGG 2 cut(s) 835, 1123
BseDI CCNNGG 5 cut(s) 720, 833, 1027, 1103, 1122
BseGI GGATG 5 cut(s) 90, 131, 439, 496, 1113
BseLI CCNNNNNNNGG 4 cut(s) 559, 839, 1097, 1104
BseMII CTCAG 4 cut(s) 180, 243, 549, 843
BseNI ACTGG 1 cut(s) 985
BseRI GAGGAG 2 cut(s) 175, 911
BseSI GKGCMC 1 cut(s) 536
BseXI GCAGC 1 cut(s) 715
Bsh1236I CGCG 2 cut(s) 53, 180
Bsh1285I CGRYCG 2 cut(s) 57, 178
BshFI GGCC 2 cut(s) 1064, 1101
BshNI GGYRCC 1 cut(s) 113
BsiEI CGRYCG 2 cut(s) 57, 178
BsiHKAI GWGCWC 2 cut(s) 536, 1160
BsiSI CCGG 1 cut(s) 1098
BslFI GGGAC 3 cut(s) 3, 536, 1045
BslI CCNNNNNNNGG 4 cut(s) 559, 839, 1097, 1104
BsmAI GTCTC 2 cut(s) 160, 885
BsmBI CGTCTC 1 cut(s) 885
BsmFI GGGAC 3 cut(s) 3, 536, 1045
BsnI GGCC 2 cut(s) 1064, 1101
Bsp119I TTCGAA 1 cut(s) 470
Bsp1286I GDGCHC 2 cut(s) 536, 1160
Bsp143I GATC 6 cut(s) 167, 175, 223, 256, 562, 880
BspANI GGCC 2 cut(s) 1064, 1101
BspCNI CTCAG 4 cut(s) 181, 244, 550, 844
BspFNI CGCG 2 cut(s) 53, 180
BspLI GGNNCC 7 cut(s) 18, 19, 115, 524, 525, 1033, 1120
BspPI GGATC 3 cut(s) 175, 264, 570
BspT104I TTCGAA 1 cut(s) 470
BspT107I GGYRCC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 985
BssECI CCNNGG 5 cut(s) 720, 833, 1027, 1103, 1122
BssMI GATC 6 cut(s) 167, 175, 223, 256, 562, 880
BssT1I CCWWGG 1 cut(s) 1103
Bst2UI CCWGG 2 cut(s) 835, 1123
Bst4CI ACNGT 6 cut(s) 25, 100, 538, 721, 910, 1028
Bst6I CTCTTC 2 cut(s) 6, 942
BstBI TTCGAA 1 cut(s) 470
BstC8I GCNNGC 3 cut(s) 241, 699, 782
BstDEI CTNAG 4 cut(s) 189, 252, 558, 852
BstDSI CCRYGG 2 cut(s) 720, 1027
BstENI CCTNNNNNAGG 1 cut(s) 557
BstF5I GGATG 5 cut(s) 90, 131, 439, 496, 1113
BstFNI CGCG 2 cut(s) 53, 180
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 6 cut(s) 170, 178, 226, 259, 565, 883
BstMAI GTCTC 2 cut(s) 160, 885
BstMBI GATC 6 cut(s) 167, 175, 223, 256, 562, 880
BstMCI CGRYCG 2 cut(s) 57, 178
BstMWI GCNNNNNNNGC 8 cut(s) 41, 50, 56, 65, 647, 737, 790, 799
BstNI CCWGG 2 cut(s) 835, 1123
BstNSI RCATGY 4 cut(s) 111, 641, 701, 784
BstSCI CCNGG 3 cut(s) 833, 1096, 1121
BstSLI GKGCMC 1 cut(s) 536
BstUI CGCG 2 cut(s) 53, 180
BstV1I GCAGC 1 cut(s) 715
BstX2I RGATCY 2 cut(s) 167, 256
BstYI RGATCY 2 cut(s) 167, 256
Bsu36I CCTNAGG 1 cut(s) 558
BsuRI GGCC 2 cut(s) 1064, 1101
BtgI CCRYGG 2 cut(s) 720, 1027
BtgZI GCGATG 1 cut(s) 315
BtsCI GGATG 5 cut(s) 90, 131, 439, 496, 1113
BtsIMutI CAGTG 4 cut(s) 96, 315, 534, 576
Cac8I GCNNGC 3 cut(s) 241, 699, 782
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 4 cut(s) 17, 523, 1032, 1100
CseI GACGC 1 cut(s) 639
CviAII CATG 5 cut(s) 108, 638, 698, 781, 1049
DdeI CTNAG 4 cut(s) 189, 252, 558, 852
DpnI GATC 6 cut(s) 169, 177, 225, 258, 564, 882
DpnII GATC 6 cut(s) 167, 175, 223, 256, 562, 880
DraI TTTAAA 1 cut(s) 753
DrdI GACNNNNNNGTC 1 cut(s) 740
DseDI GACNNNNNNGTC 1 cut(s) 740
EaeI YGGCCR 1 cut(s) 1062
Eam1104I CTCTTC 2 cut(s) 6, 942
EarI CTCTTC 2 cut(s) 6, 942
EciI GGCGGA 1 cut(s) 1162
Eco130I CCWWGG 1 cut(s) 1103
Eco47I GGWCC 3 cut(s) 17, 523, 1032
Eco81I CCTNAGG 1 cut(s) 558
EcoNI CCTNNNNNAGG 1 cut(s) 557
EcoO109I RGGNCCY 2 cut(s) 17, 523
EcoRII CCWGG 2 cut(s) 833, 1121
EcoT14I CCWWGG 1 cut(s) 1103
EcoT22I ATGCAT 3 cut(s) 439, 626, 643
ErhI CCWWGG 1 cut(s) 1103
Esp3I CGTCTC 1 cut(s) 885
FaeI CATG 5 cut(s) 111, 641, 701, 784, 1052
FaqI GGGAC 3 cut(s) 3, 536, 1045
FatI CATG 5 cut(s) 107, 637, 697, 780, 1048
FauI CCCGC 2 cut(s) 144, 777
FbaI TGATCA 2 cut(s) 223, 880
FblI GTMKAC 1 cut(s) 449
Fnu4HI GCNGC 6 cut(s) 36, 51, 112, 140, 729, 865
FokI GGATG 5 cut(s) 77, 118, 446, 483, 1120
Fsp4HI GCNGC 6 cut(s) 36, 51, 112, 140, 729, 865
FspBI CTAG 1 cut(s) 1171
GlaI GCGC 1 cut(s) 181
GluI GCNGC 6 cut(s) 36, 51, 112, 140, 729, 865
GsuI CTGGAG 1 cut(s) 856
HaeIII GGCC 2 cut(s) 1064, 1101
HapII CCGG 1 cut(s) 1098
HgaI GACGC 1 cut(s) 639
HhaI GCGC 1 cut(s) 182
Hin1II CATG 5 cut(s) 111, 641, 701, 784, 1052
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HincII GTYRAC 1 cut(s) 654
HindII GTYRAC 1 cut(s) 654
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 8 cut(s) 119, 146, 193, 446, 848, 901, 1128, 1150
HpaII CCGG 1 cut(s) 1098
HphI GGTGA 5 cut(s) 94, 150, 496, 608, 799
Hpy166II GTNNAC 3 cut(s) 450, 534, 654
Hpy188I TCNGA 6 cut(s) 151, 190, 211, 253, 853, 1155
Hpy188III TCNNGA 2 cut(s) 173, 1011
Hpy8I GTNNAC 3 cut(s) 450, 534, 654
HpyAV CCTTC 5 cut(s) 350, 475, 512, 516, 1008
HpyCH4III ACNGT 6 cut(s) 25, 100, 538, 721, 910, 1028
HpyCH4IV ACGT 1 cut(s) 490
HpyCH4V TGCA 7 cut(s) 68, 437, 534, 624, 641, 697, 932
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 50, 56, 65, 647, 737, 790, 799
HpyF3I CTNAG 4 cut(s) 189, 252, 558, 852
HpySE526I ACGT 1 cut(s) 490
Hsp92II CATG 5 cut(s) 111, 641, 701, 784, 1052
HspAI GCGC 1 cut(s) 180
KflI GGGWCCC 2 cut(s) 17, 523
Ksp22I TGATCA 2 cut(s) 223, 880
Kzo9I GATC 6 cut(s) 167, 175, 223, 256, 562, 880
Lsp1109I GCAGC 1 cut(s) 715
LweI GCATC 4 cut(s) 55, 424, 919, 1098
MaeI CTAG 1 cut(s) 1171
MaeII ACGT 1 cut(s) 490
MaeIII GTNAC 3 cut(s) 25, 100, 742
MalI GATC 6 cut(s) 169, 177, 225, 258, 564, 882
MboI GATC 6 cut(s) 167, 175, 223, 256, 562, 880
MboII GAAGA 6 cut(s) 23, 280, 412, 490, 868, 959
MflI RGATCY 2 cut(s) 167, 256
MhlI GDGCHC 2 cut(s) 536, 1160
MluCI AATT 2 cut(s) 418, 681
MlyI GAGTC 2 cut(s) 455, 1144
MmeI TCCRAC 1 cut(s) 145
Mph1103I ATGCAT 3 cut(s) 439, 626, 643
MseI TTAA 3 cut(s) 276, 342, 752
MslI CAYNNNNRTG 2 cut(s) 785, 927
MspI CCGG 1 cut(s) 1098
MspR9I CCNGG 3 cut(s) 835, 1098, 1123
MvaI CCWGG 2 cut(s) 835, 1123
MvnI CGCG 2 cut(s) 53, 180
MwoI GCNNNNNNNGC 8 cut(s) 41, 50, 56, 65, 647, 737, 790, 799
NciI CCSGG 1 cut(s) 1098
NdeII GATC 6 cut(s) 167, 175, 223, 256, 562, 880
NlaIII CATG 5 cut(s) 111, 641, 701, 784, 1052
NlaIV GGNNCC 7 cut(s) 18, 19, 115, 524, 525, 1033, 1120
NmuCI GTSAC 3 cut(s) 25, 100, 742
NsiI ATGCAT 3 cut(s) 439, 626, 643
NspI RCATGY 4 cut(s) 111, 641, 701, 784
NspV TTCGAA 1 cut(s) 470
PaeI GCATGC 2 cut(s) 701, 784
PfeI GAWTC 6 cut(s) 119, 146, 193, 848, 901, 1128
PkrI GCNGC 6 cut(s) 37, 52, 113, 141, 730, 866
Ple19I CGATCG 1 cut(s) 178
PleI GAGTC 2 cut(s) 454, 1144
PpsI GAGTC 2 cut(s) 454, 1144
PpuMI RGGWCCY 2 cut(s) 17, 523
Psp5II RGGWCCY 2 cut(s) 17, 523
Psp6I CCWGG 2 cut(s) 833, 1121
PspGI CCWGG 2 cut(s) 833, 1121
PspN4I GGNNCC 7 cut(s) 18, 19, 115, 524, 525, 1033, 1120
PspPI GGNCC 4 cut(s) 17, 523, 1032, 1100
PspPPI RGGWCCY 2 cut(s) 17, 523
PsuI RGATCY 2 cut(s) 167, 256
PvuI CGATCG 1 cut(s) 178
RseI CAYNNNNRTG 2 cut(s) 785, 927
SaqAI TTAA 3 cut(s) 276, 342, 752
SatI GCNGC 6 cut(s) 36, 51, 112, 140, 729, 865
Sau3AI GATC 6 cut(s) 167, 175, 223, 256, 562, 880
Sau96I GGNCC 4 cut(s) 17, 523, 1032, 1100
SchI GAGTC 2 cut(s) 455, 1144
ScrFI CCNGG 3 cut(s) 835, 1098, 1123
SduI GDGCHC 2 cut(s) 536, 1160
SfaNI GCATC 4 cut(s) 55, 424, 919, 1098
SfuI TTCGAA 1 cut(s) 470
SinI GGWCC 3 cut(s) 17, 523, 1032
SmiMI CAYNNNNRTG 2 cut(s) 785, 927
SphI GCATGC 2 cut(s) 701, 784
Sse9I AATT 2 cut(s) 418, 681
SspMI CTAG 1 cut(s) 1171
StyD4I CCNGG 3 cut(s) 833, 1096, 1121
StyI CCWWGG 1 cut(s) 1103
TaaI ACNGT 6 cut(s) 25, 100, 538, 721, 910, 1028
TaiI ACGT 1 cut(s) 493
TaqI TCGA 3 cut(s) 332, 470, 994
TaqII GACCGA 1 cut(s) 686
TasI AATT 2 cut(s) 418, 681
TauI GCSGC 5 cut(s) 38, 53, 114, 142, 867
TfiI GAWTC 6 cut(s) 119, 146, 193, 848, 901, 1128
Tru1I TTAA 3 cut(s) 276, 342, 752
Tru9I TTAA 3 cut(s) 276, 342, 752
TscAI CASTG 4 cut(s) 103, 322, 541, 576
TseFI GTSAC 3 cut(s) 25, 100, 742
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 3 cut(s) 25, 100, 742
TspDTI ATGAA 4 cut(s) 318, 413, 485, 960
TspGWI ACGGA 2 cut(s) 949, 969
TspRI CASTG 4 cut(s) 103, 322, 541, 576
VneI GTGCAC 1 cut(s) 532
VpaK11BI GGWCC 3 cut(s) 17, 523, 1032
XagI CCTNNNNNAGG 1 cut(s) 557
XceI RCATGY 4 cut(s) 111, 641, 701, 784
XmiI GTMKAC 1 cut(s) 449
XspI CTAG 1 cut(s) 1171
Zsp2I ATGCAT 3 cut(s) 439, 626, 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.