RLG00000032055

La-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0008795
Physical Location & Seq
Reverse (-)
10500321 .. 10504223
3903 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032055

Sequence Viewer

Length: 1119 bp
ATGGAAGGCGAAGAGGGGCCCGCCGACGCAGCCATCGTCGCCGTCGCTGTCACCACCGCCGACTCCACTCCACCGTCTCCGCCCAACGACTCCGATGTCTCGCCCGTTGGATCCCCCGATCACGGCGCGTCCTCCGAGATTCTACGGTTGCCGTCCGACGACGACCCCGATCAATCGGCCGGCGGTGCTCTCACCGAGGATCTTAAACAAAAGATTATCAAGCAGGTGGAATATTACTTTAGTGATGAAAATTTGCCTAATGACAAATACATGTTGAGTTTGATTAAAAAGAACAAAGAAGGTTTTGTTCCTATTTCGGTTATTGCGTCCTTCAGAAAAATGAAAAAGCTTATTCGAAACAACTCGTTAATAGTGGCTGCTTTGAAGGACTCTTCCCTCCTTGTTGTGAGTTCGAATGGGAAGAAGGTGAAACGACTTCATCCTCTACCATTACCTGAAACGAGGGATCCAAAGTTCACTGTTTTGGTAGAGAATCTACCAACTGATCATTCAGTGGAGAACCTTAAGAAAATGTTTAGCAAAGCTGGAAATATAAAGGATATATGCATACTTGACCCAAGTGCCATAGAGGCATCTGCAAAAGGCGGCAAGGTTGAGAAGCCAATCAGTAATAAGTTGCATGCTCTTGTAGAGTATGATACCGTGGAGGCTACTGAGAAAGCTGTTGCTATTTTAAACAATGAGGAAGATTGGAGAAATGGCATGCGGGTGAAGCTTCTTAAGCAGATGGGTAAGTACGGGCAGAGTGGACAGAGAAGACAATCCCGCAGAGGCTTTGATTCGGAGAAGAGTAGCAGTAGTCGAACGTCTGAAACAGGGATCGAGGAGACTCATAATGCGAACGAACATCACAATGGTACACCTGACGAAGAGGATGGAGGAGACCAAGTGCCCAAGGAGAAAACTGGGCACAGGGGTCGAAGTCGAGGGCAATCTGGTAGGCAGAAGTATCGTGGCCTCAATGGTTTTGGTCACGGGACTACTTCATCTAGTCATCCATTTGAACCTTCAAAGCCACCACCTGGCCCTAGAATGCCTGATGGAACTAGGGGATTCACAATGGGACGAGGCCGGACTCCAGTGCCGAATCAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
La RRM_1

Protein Analysis

373

Amino Acids

40.48

Weight (kDa)

8.38

Isoelectric Point (pI)

54.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
La PF05383 72 - 130 2.1e-26 La domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 214
AasI GACNNNNNNGTC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 214
AccB7I CCANNNNNTGG 1 cut(s) 1043
AccII CGCG 1 cut(s) 128
AciI CCGC 7 cut(s) 21, 57, 80, 183, 606, 727, 787
AclWI GGATC 6 cut(s) 105, 118, 207, 461, 474, 848
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 1 cut(s) 250
AcuI CTGAAG 1 cut(s) 316
AfaI GTAC 2 cut(s) 758, 880
AfiI CCNNNNNNNGG 2 cut(s) 122, 1043
AflII CTTAAG 2 cut(s) 524, 740
AflIII ACRYGT 1 cut(s) 270
AgsI TTSAA 3 cut(s) 385, 1025, 1032
AjnI CCWGG 1 cut(s) 1042
AjuI GAANNNNNNNTTGG 2 cut(s) 493, 525
AloI GAACNNNNNNTCC 2 cut(s) 458, 490
AluBI AGCT 4 cut(s) 349, 545, 683, 736
AluI AGCT 4 cut(s) 349, 545, 683, 736
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 4 cut(s) 81, 103, 842, 897
AlwI GGATC 6 cut(s) 105, 118, 207, 461, 474, 848
AoxI GGCC 5 cut(s) 17, 177, 976, 1045, 1090
ApaI GGGCCC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 29, 377
ApoI RAATTY 1 cut(s) 250
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 3 cut(s) 17, 18, 1046
AsuHPI GGTGA 4 cut(s) 43, 184, 439, 742
AsuII TTCGAA 2 cut(s) 355, 413
BaeGI GKGCMC 3 cut(s) 21, 915, 933
BamHI GGATCC 2 cut(s) 110, 466
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 784
Bbv12I GWGCWC 1 cut(s) 190
BbvI GCAGC 2 cut(s) 41, 364
BccI CCATC 4 cut(s) 41, 742, 890, 1055
BceAI ACGGC 3 cut(s) 26, 136, 139
BcgI CGANNNNNNTGC 4 cut(s) 920, 953, 954, 987
BciT130I CCWGG 1 cut(s) 1044
BclI TGATCA 1 cut(s) 505
BcoDI GTCTC 4 cut(s) 81, 103, 842, 897
BfaI CTAG 3 cut(s) 1011, 1050, 1068
BfrI CTTAAG 2 cut(s) 524, 740
BfuAI ACCTGC 1 cut(s) 214
BglI GCCNNNNNGGC 1 cut(s) 590
BisI GCNGC 3 cut(s) 30, 378, 607
BlsI GCNGC 3 cut(s) 31, 379, 608
Bme1390I CCNGG 1 cut(s) 1044
BmgT120I GGNCC 3 cut(s) 17, 18, 1046
BmiI GGNNCC 4 cut(s) 18, 19, 112, 468
BmrFI CCNGG 1 cut(s) 1044
BmrI ACTGGG 1 cut(s) 936
BmsI GCATC 1 cut(s) 602
BmuI ACTGGG 1 cut(s) 936
BpiI GAAGAC 1 cut(s) 784
BpmI CTGGAG 1 cut(s) 1083
Bpu14I TTCGAA 2 cut(s) 355, 413
BsaI GGTCTC 1 cut(s) 897
BsaJI CCNNGG 3 cut(s) 195, 663, 915
BsaXI ACNNNNNCTCC 2 cut(s) 894, 924
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 1043
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 931, 1100
BseBI CCWGG 1 cut(s) 1044
BseDI CCNNGG 3 cut(s) 195, 663, 915
BseGI GGATG 3 cut(s) 439, 901, 1015
BseLI CCNNNNNNNGG 2 cut(s) 122, 1043
BseMII CTCAG 1 cut(s) 666
BseNI ACTGG 2 cut(s) 931, 1100
BseRI GAGGAG 2 cut(s) 860, 915
BseSI GKGCMC 3 cut(s) 21, 915, 933
BseX3I CGGCCG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 41, 364
Bsh1236I CGCG 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 5 cut(s) 19, 179, 978, 1047, 1092
BsiEI CGRYCG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 190
BsiSI CCGG 2 cut(s) 180, 1093
BslFI GGGAC 2 cut(s) 1012, 1098
BslI CCNNNNNNNGG 2 cut(s) 122, 1043
BsmAI GTCTC 4 cut(s) 81, 103, 842, 897
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 2 cut(s) 1012, 1098
BsmI GAATGC 1 cut(s) 1059
BsnI GGCC 5 cut(s) 19, 179, 978, 1047, 1092
Bso31I GGTCTC 1 cut(s) 897
Bsp119I TTCGAA 2 cut(s) 355, 413
Bsp120I GGGCCC 1 cut(s) 17
Bsp1286I GDGCHC 4 cut(s) 21, 190, 915, 933
Bsp143I GATC 7 cut(s) 110, 118, 169, 199, 466, 505, 840
BspACI CCGC 7 cut(s) 21, 57, 80, 183, 606, 727, 787
BspANI GGCC 5 cut(s) 19, 179, 978, 1047, 1092
BspCNI CTCAG 1 cut(s) 667
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 4 cut(s) 18, 19, 112, 468
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 6 cut(s) 105, 118, 207, 461, 474, 848
BspT104I TTCGAA 2 cut(s) 355, 413
BspTI CTTAAG 2 cut(s) 524, 740
BspTNI GGTCTC 1 cut(s) 897
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 2 cut(s) 931, 1100
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 195, 663, 915
BssMI GATC 7 cut(s) 110, 118, 169, 199, 466, 505, 840
BssT1I CCWWGG 1 cut(s) 915
Bst2UI CCWGG 1 cut(s) 1044
Bst4CI ACNGT 4 cut(s) 75, 147, 481, 664
Bst6I CTCTTC 4 cut(s) 6, 397, 803, 885
BstAFI CTTAAG 2 cut(s) 524, 740
BstBI TTCGAA 2 cut(s) 355, 413
BstC8I GCNNGC 4 cut(s) 21, 181, 642, 725
BstDEI CTNAG 1 cut(s) 675
BstDSI CCRYGG 1 cut(s) 663
BstF5I GGATG 3 cut(s) 439, 901, 1015
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 7 cut(s) 113, 121, 172, 202, 469, 508, 843
BstMAI GTCTC 4 cut(s) 81, 103, 842, 897
BstMBI GATC 7 cut(s) 110, 118, 169, 199, 466, 505, 840
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 6 cut(s) 29, 38, 185, 590, 733, 742
BstNI CCWGG 1 cut(s) 1044
BstNSI RCATGY 3 cut(s) 274, 644, 727
BstSCI CCNGG 1 cut(s) 1042
BstSLI GKGCMC 3 cut(s) 21, 915, 933
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 2 cut(s) 41, 364
BstV2I GAAGAC 1 cut(s) 784
BstX2I RGATCY 3 cut(s) 110, 199, 466
BstYI RGATCY 3 cut(s) 110, 199, 466
BstZI CGGCCG 1 cut(s) 177
BsuRI GGCC 5 cut(s) 19, 179, 978, 1047, 1092
BtgI CCRYGG 1 cut(s) 663
BtsCI GGATG 3 cut(s) 439, 901, 1015
BtsIMutI CAGTG 3 cut(s) 477, 519, 1107
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 4 cut(s) 21, 181, 642, 725
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 3 cut(s) 17, 18, 1046
CseI GACGC 3 cut(s) 35, 117, 315
Csp6I GTAC 2 cut(s) 757, 879
CviAII CATG 3 cut(s) 271, 641, 724
CviQI GTAC 2 cut(s) 757, 879
DdeI CTNAG 1 cut(s) 675
DpnI GATC 7 cut(s) 112, 120, 171, 201, 468, 507, 842
DpnII GATC 7 cut(s) 110, 118, 169, 199, 466, 505, 840
DraI TTTAAA 1 cut(s) 696
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
EaeI YGGCCR 1 cut(s) 177
EagI CGGCCG 1 cut(s) 177
Eam1104I CTCTTC 4 cut(s) 6, 397, 803, 885
EarI CTCTTC 4 cut(s) 6, 397, 803, 885
EciI GGCGGA 1 cut(s) 69
EclXI CGGCCG 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 915
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 897
Eco52I CGGCCG 1 cut(s) 177
Eco57I CTGAAG 1 cut(s) 316
EcoO109I RGGNCCY 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 1042
EcoT14I CCWWGG 1 cut(s) 915
EcoT22I ATGCAT 1 cut(s) 569
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 915
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 3 cut(s) 274, 644, 727
FaqI GGGAC 2 cut(s) 1012, 1098
FatI CATG 3 cut(s) 270, 640, 723
FauI CCCGC 3 cut(s) 28, 720, 794
FbaI TGATCA 1 cut(s) 505
Fnu4HI GCNGC 3 cut(s) 30, 378, 607
FokI GGATG 3 cut(s) 426, 908, 1002
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 3 cut(s) 30, 378, 607
FspBI CTAG 3 cut(s) 1011, 1050, 1068
GlaI GCGC 1 cut(s) 127
GluI GCNGC 3 cut(s) 30, 378, 607
GsuI CTGGAG 1 cut(s) 1083
HaeIII GGCC 5 cut(s) 19, 179, 978, 1047, 1092
HapII CCGG 2 cut(s) 180, 1093
HgaI GACGC 3 cut(s) 35, 117, 315
HhaI GCGC 1 cut(s) 128
Hin1II CATG 3 cut(s) 274, 644, 727
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 2 cut(s) 347, 734
HpaII CCGG 2 cut(s) 180, 1093
HphI GGTGA 4 cut(s) 43, 184, 439, 742
Hpy166II GTNNAC 3 cut(s) 477, 770, 881
Hpy188I TCNGA 7 cut(s) 94, 136, 157, 335, 805, 832, 1113
Hpy8I GTNNAC 3 cut(s) 477, 770, 881
Hpy99I CGWCG 5 cut(s) 29, 41, 47, 161, 164
HpyAV CCTTC 5 cut(s) 293, 340, 379, 418, 1038
HpyCH4III ACNGT 4 cut(s) 75, 147, 481, 664
HpyCH4IV ACGT 1 cut(s) 827
HpyCH4V TGCA 3 cut(s) 567, 599, 640
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 38, 185, 590, 733, 742
HpyF3I CTNAG 1 cut(s) 675
HpySE526I ACGT 1 cut(s) 827
Hsp92II CATG 3 cut(s) 274, 644, 727
HspAI GCGC 1 cut(s) 126
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 505
Kzo9I GATC 7 cut(s) 110, 118, 169, 199, 466, 505, 840
Lsp1109I GCAGC 2 cut(s) 41, 364
LweI GCATC 1 cut(s) 602
MaeI CTAG 3 cut(s) 1011, 1050, 1068
MaeII ACGT 1 cut(s) 827
MaeIII GTNAC 2 cut(s) 49, 992
MalI GATC 7 cut(s) 112, 120, 171, 201, 468, 507, 842
MboI GATC 7 cut(s) 110, 118, 169, 199, 466, 505, 840
MboII GAAGA 7 cut(s) 23, 384, 433, 719, 789, 820, 902
MflI RGATCY 3 cut(s) 110, 199, 466
MhlI GDGCHC 4 cut(s) 21, 190, 915, 933
MluCI AATT 1 cut(s) 250
MlyI GAGTC 5 cut(s) 56, 83, 383, 844, 1090
MmeI TCCRAC 2 cut(s) 88, 180
Mph1103I ATGCAT 1 cut(s) 569
MroNI GCCGGC 1 cut(s) 179
MseI TTAA 7 cut(s) 204, 285, 368, 525, 695, 741, 1117
MslI CAYNNNNRTG 2 cut(s) 728, 873
MspCI CTTAAG 2 cut(s) 524, 740
MspI CCGG 2 cut(s) 180, 1093
MspR9I CCNGG 1 cut(s) 1044
Mva1269I GAATGC 1 cut(s) 1059
MvaI CCWGG 1 cut(s) 1044
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 6 cut(s) 29, 38, 185, 590, 733, 742
NaeI GCCGGC 1 cut(s) 181
NdeII GATC 7 cut(s) 110, 118, 169, 199, 466, 505, 840
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 3 cut(s) 274, 644, 727
NlaIV GGNNCC 4 cut(s) 18, 19, 112, 468
NmuCI GTSAC 2 cut(s) 49, 992
NsiI ATGCAT 1 cut(s) 569
NspI RCATGY 3 cut(s) 274, 644, 727
NspV TTCGAA 2 cut(s) 355, 413
PaeI GCATGC 2 cut(s) 644, 727
PaqCI CACCTGC 1 cut(s) 214
PciI ACATGT 1 cut(s) 270
PcsI WCGNNNNNNNCGW 3 cut(s) 33, 165, 323
PctI GAATGC 1 cut(s) 1059
PdiI GCCGGC 1 cut(s) 181
PfeI GAWTC 5 cut(s) 139, 493, 800, 1074, 1108
PflMI CCANNNNNTGG 1 cut(s) 1043
PkrI GCNGC 3 cut(s) 31, 379, 608
PleI GAGTC 5 cut(s) 56, 83, 383, 844, 1090
PpsI GAGTC 5 cut(s) 56, 83, 383, 844, 1090
PscI ACATGT 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 1042
PspGI CCWGG 1 cut(s) 1042
PspN4I GGNNCC 4 cut(s) 18, 19, 112, 468
PspOMI GGGCCC 1 cut(s) 17
PspPI GGNCC 3 cut(s) 17, 18, 1046
PsuI RGATCY 3 cut(s) 110, 199, 466
RsaI GTAC 2 cut(s) 758, 880
RsaNI GTAC 2 cut(s) 757, 879
RseI CAYNNNNRTG 2 cut(s) 728, 873
SaqAI TTAA 7 cut(s) 204, 285, 368, 525, 695, 741, 1117
SatI GCNGC 3 cut(s) 30, 378, 607
Sau3AI GATC 7 cut(s) 110, 118, 169, 199, 466, 505, 840
Sau96I GGNCC 3 cut(s) 17, 18, 1046
SchI GAGTC 5 cut(s) 56, 83, 383, 844, 1090
ScrFI CCNGG 1 cut(s) 1044
SduI GDGCHC 4 cut(s) 21, 190, 915, 933
SfaNI GCATC 1 cut(s) 602
SfuI TTCGAA 2 cut(s) 355, 413
SmiMI CAYNNNNRTG 2 cut(s) 728, 873
SmlI CTYRAG 2 cut(s) 524, 740
SmoI CTYRAG 2 cut(s) 524, 740
SphI GCATGC 2 cut(s) 644, 727
Sse9I AATT 1 cut(s) 250
SsiI CCGC 7 cut(s) 21, 57, 80, 183, 606, 727, 787
SspI AATATT 1 cut(s) 233
SspMI CTAG 3 cut(s) 1011, 1050, 1068
StyD4I CCNGG 1 cut(s) 1042
StyI CCWWGG 1 cut(s) 915
TaaI ACNGT 4 cut(s) 75, 147, 481, 664
TaiI ACGT 1 cut(s) 830
TaqI TCGA 6 cut(s) 355, 413, 823, 843, 940, 946
TasI AATT 1 cut(s) 250
TauI GCSGC 1 cut(s) 609
TfiI GAWTC 5 cut(s) 139, 493, 800, 1074, 1108
Tru1I TTAA 7 cut(s) 204, 285, 368, 525, 695, 741, 1117
Tru9I TTAA 7 cut(s) 204, 285, 368, 525, 695, 741, 1117
TscAI CASTG 3 cut(s) 484, 519, 1107
TseFI GTSAC 2 cut(s) 49, 992
TseI GCWGC 2 cut(s) 29, 377
Tsp45I GTSAC 2 cut(s) 49, 992
TspDTI ATGAA 4 cut(s) 261, 356, 428, 996
TspRI CASTG 3 cut(s) 484, 519, 1107
Van91I CCANNNNNTGG 1 cut(s) 1043
Vha464I CTTAAG 2 cut(s) 524, 740
XapI RAATTY 1 cut(s) 250
XceI RCATGY 3 cut(s) 274, 644, 727
XspI CTAG 3 cut(s) 1011, 1050, 1068
Zsp2I ATGCAT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.