Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009187

Physical Location & Seq

Genomic Coordinates Reverse (-)

18988588 .. 18990867

Gene Structure 2280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G46800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCGGATGCGTGGAAGGATTTAGCTTCAGGGACTGTTGGAGGAGCTGCTCAACTAGTTGTTGGTCATCCATTTGACACTATCAAGGTCAAACTTCAGAGCCAACCGACTCCAGCACCAGGCCAACTTCCAAGGTACACCGGTGCAATCGATGCGGTTAAACAGACCGTTGCTTCTGAAGGAACCAAAGGTTTGTATAAAGGTATGGGAGCTCCACTTGCAACCGTTGCTGCCTTCAATGCGGTTTTGTTCACTGTGAGAGGTCAAATGGAAGGGCTGCTTAGGTCTGAAGCTGGAGTTCCTTTGACCATTAGTCAACAGTTTGTGGCCGGTGCAGGCGCTGGTTTCGCTGTTTCGTTCCTTGCTTGTCCTACCGAGTTGATCAAGTGCAGGTTGCAAGCACAAGGTGCATTAGCTGGTGCCTCTACTACAAGCTCAGTGGTTGCAGCCGTGAAATACGGTGGACCAATGGATGTAGCCCGTCATGTCCTACGATCAGAAGGAGGAGCACGAGGTCTATTCAAAGGTTTATTCCCTACATTCGCCCGTGAAGTCCCGGGAAATGCAACAATGTTTGCAGCCTACGAAGCTTTCAAGCGGTTTTTAGCCGGTGGTTCAGACACTTCAAGCTTAGGACAAGGGTCATTGATCATGGCGGGTGGAGTCGCTGGTGCTTCTTTTTGGGGAATAGTATATCCGACAGATGTTGTGAAGAGTGTTCTTCAAGTCGACGATTACAAAAACCCGAGATACACGGGGTCGATGGATGCTTTTCGGAAGATTCTGAAATCTGAAGGAGTTAAAGGTTTGTATAAAGGATTTGGTCCAGCTATGGCTAGGAGTGTTCCTGCTAATGCTGCTTGCTTCTTGGCTTATGAGATGACAAGGTCAAGCTTGGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009507 GO:0009536 GO:0015075 GO:0015171 GO:0015179 GO:0015238 GO:0015318 GO:0015711 GO:0015807 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903352 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

300

Amino Acids

31.02

Weight (kDa)

9.56

Isoelectric Point (pI)

31.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	4 - 95	4e-19	Mitochondrial carrier protein
Mito_carr	PF00153	102 - 203	1.2e-21	Mitochondrial carrier protein
Mito_carr	PF00153	215 - 299	2.6e-24	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46800 AT5G46800 AT5G46800
fragaria_vesca	FvH4_7g06810 FvH4_7g06810 FvH4_7g06810
malus_domestica	MD06G1033900.v1.1 MD16G1274700.v1.1
prunus_persica	Prupe.8G063200_v2.0.a1 Prupe.8G063200_v2.0.a1
pyrus_communis	pycom06g02800 pycom16g24480
rosa_chinensis	RchiOBHm_Chr7g0209661
rosa_laevigata	RLG00000003106
rosa_multiflora	Rmu_sc0021920.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249170
rosa_rugosa	Rorug07G0115100
rosa_samantha	Rh7AG248800 Rh7BG242800 Rh7CG264700 Rh7DG254700
rosa_wichuraiana	Rw7G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	381
AccB1I	GGYRCC	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	729
AciI	CCGC	5 cut(s)	5, 155, 242, 598, 656
AcoI	YGGCCR	1 cut(s)	327
AcuI	CTGAAG	5 cut(s)	12, 80, 198, 309, 813
AdeI	CACNNNGTG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgeI	ACCGGT	1 cut(s)	140
AgsI	TTSAA	5 cut(s)	238, 523, 595, 627, 725
AhdI	GACNNNNNGTC	1 cut(s)	312
AhlI	ACTAGT	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	118
Alw21I	GWGCWC	2 cut(s)	214, 511
AlwNI	CAGNNNCTG	2 cut(s)	35, 341
Ama87I	CYCGRG	2 cut(s)	556, 745
AoxI	GGCC	2 cut(s)	121, 327
ApeKI	GCWGC	6 cut(s)	47, 230, 277, 446, 578, 857
AsiGI	ACCGGT	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	2 cut(s)	464, 824
AsuC2I	CCSGG	2 cut(s)	557, 558
AvaI	CYCGRG	2 cut(s)	556, 745
AvaII	GGWCC	2 cut(s)	464, 824
BaeI	ACNNNNGTAYC	2 cut(s)	127, 160
BanI	GGYRCC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	214
BauI	CACGAG	1 cut(s)	510
Bbv12I	GWGCWC	2 cut(s)	214, 511
BbvI	GCAGC	6 cut(s)	34, 217, 264, 458, 590, 844
BccI	CCATC	1 cut(s)	757
BceAI	ACGGC	1 cut(s)	434
BciT130I	CCWGG	1 cut(s)	120
BclI	TGATCA	2 cut(s)	381, 648
BcnI	CCSGG	2 cut(s)	557, 558
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	2 cut(s)	56, 837
BfoI	RGCGCY	1 cut(s)	342
BfuAI	ACCTGC	1 cut(s)	381
BisI	GCNGC	6 cut(s)	48, 231, 278, 447, 579, 858
BlsI	GCNGC	6 cut(s)	49, 232, 279, 448, 580, 859
Bme1390I	CCNGG	3 cut(s)	120, 557, 558
Bme18I	GGWCC	2 cut(s)	464, 824
BmeRI	GACNNNNNGTC	1 cut(s)	312
BmeT110I	CYCGRG	2 cut(s)	556, 745
BmgT120I	GGNCC	2 cut(s)	464, 824
BmiI	GGNNCC	2 cut(s)	184, 421
BmrFI	CCNGG	3 cut(s)	120, 557, 558
BmsI	GCATC	2 cut(s)	142, 757
BoxI	GACNNNNGTC	1 cut(s)	640
BpmI	CTGGAG	2 cut(s)	96, 315
Bpu10I	CCTNAGC	2 cut(s)	281, 631
BpuMI	CCSGG	2 cut(s)	557, 558
Bsa29I	ATCGAT	1 cut(s)	150
BsaJI	CCNNGG	2 cut(s)	131, 556
BsaWI	WCCGGW	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	3 cut(s)	140, 329, 608
BseBI	CCWGG	1 cut(s)	120
BseCI	ATCGAT	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	131, 556
BseGI	GGATG	4 cut(s)	13, 67, 478, 772
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	450
BseRI	GAGGAG	2 cut(s)	57, 519
BseXI	GCAGC	6 cut(s)	34, 217, 264, 458, 590, 844
BsgI	GTGCAG	2 cut(s)	354, 409
BshFI	GGCC	2 cut(s)	123, 329
BshNI	GGYRCC	1 cut(s)	419
BshTI	ACCGGT	1 cut(s)	140
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	2 cut(s)	214, 511
BsiHKCI	CYCGRG	2 cut(s)	556, 745
BsiSI	CCGG	4 cut(s)	141, 330, 557, 609
BslFI	GGGAC	2 cut(s)	46, 539
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	46, 539
BsnI	GGCC	2 cut(s)	123, 329
BsoBI	CYCGRG	2 cut(s)	556, 745
Bsp1286I	GDGCHC	2 cut(s)	214, 511
Bsp143I	GATC	3 cut(s)	381, 494, 648
BspACI	CCGC	5 cut(s)	5, 155, 242, 598, 656
BspANI	GGCC	2 cut(s)	123, 329
BspCNI	CTCAG	1 cut(s)	449
BspDI	ATCGAT	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	184, 421
BspMI	ACCTGC	1 cut(s)	381
BspT107I	GGYRCC	1 cut(s)	419
BsrFI	RCCGGY	3 cut(s)	140, 329, 608
BssAI	RCCGGY	3 cut(s)	140, 329, 608
BssECI	CCNNGG	2 cut(s)	131, 556
BssMI	GATC	3 cut(s)	381, 494, 648
BssSI	CACGAG	1 cut(s)	510
BssT1I	CCWWGG	1 cut(s)	131
Bst2BI	CACGAG	1 cut(s)	510
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	6 cut(s)	37, 169, 226, 256, 321, 461
Bst6I	CTCTTC	1 cut(s)	707
BstAPI	GCANNNNNTGC	3 cut(s)	152, 227, 407
BstC8I	GCNNGC	3 cut(s)	337, 399, 862
BstDEI	CTNAG	3 cut(s)	281, 436, 631
BstF5I	GGATG	4 cut(s)	13, 67, 478, 772
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	3 cut(s)	384, 497, 651
BstMBI	GATC	3 cut(s)	381, 494, 648
BstMWI	GCNNNNNNNGC	8 cut(s)	152, 218, 227, 239, 347, 407, 587, 857
BstNI	CCWGG	1 cut(s)	120
BstPAI	GACNNNNGTC	1 cut(s)	640
BstSCI	CCNGG	3 cut(s)	118, 555, 556
BstV1I	GCAGC	6 cut(s)	34, 217, 264, 458, 590, 844
Bsu15I	ATCGAT	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	123, 329
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	4 cut(s)	13, 67, 478, 772
BtsIMutI	CAGTG	2 cut(s)	252, 444
BveI	ACCTGC	1 cut(s)	381
Cac8I	GCNNGC	3 cut(s)	337, 399, 862
CaiI	CAGNNNCTG	2 cut(s)	35, 341
CfoI	GCGC	1 cut(s)	341
Cfr10I	RCCGGY	3 cut(s)	140, 329, 608
Cfr13I	GGNCC	2 cut(s)	464, 824
Cfr9I	CCCGGG	1 cut(s)	556
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	1 cut(s)	136
CspAI	ACCGGT	1 cut(s)	140
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	2 cut(s)	485, 652
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	3 cut(s)	281, 436, 631
DpnI	GATC	3 cut(s)	383, 496, 650
DpnII	GATC	3 cut(s)	381, 494, 648
DraIII	CACNNNGTG	1 cut(s)	407
DriI	GACNNNNNGTC	1 cut(s)	312
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	707
Eam1105I	GACNNNNNGTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	707
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	214
Eco47I	GGWCC	2 cut(s)	464, 824
Eco53kI	GAGCTC	1 cut(s)	212
Eco57I	CTGAAG	5 cut(s)	12, 80, 198, 309, 813
Eco88I	CYCGRG	2 cut(s)	556, 745
EcoICRI	GAGCTC	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	2 cut(s)	488, 655
FaiI	YATR	8 cut(s)	198, 206, 486, 653, 694, 813, 833, 876
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	2 cut(s)	46, 539
FatI	CATG	2 cut(s)	484, 651
FauI	CCCGC	1 cut(s)	649
FbaI	TGATCA	2 cut(s)	381, 648
FblI	GTMKAC	1 cut(s)	729
Fnu4HI	GCNGC	6 cut(s)	48, 231, 278, 447, 579, 858
FokI	GGATG	4 cut(s)	20, 54, 485, 779
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	6 cut(s)	48, 231, 278, 447, 579, 858
FspBI	CTAG	2 cut(s)	56, 837
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	6 cut(s)	48, 231, 278, 447, 579, 858
GsuI	CTGGAG	2 cut(s)	96, 315
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	2 cut(s)	123, 329
HapII	CCGG	4 cut(s)	141, 330, 557, 609
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	2 cut(s)	488, 655
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	2 cut(s)	317, 730
HindII	GTYRAC	2 cut(s)	317, 730
HindIII	AAGCTT	3 cut(s)	588, 628, 892
HinfI	GANTC	3 cut(s)	109, 663, 781
HpaII	CCGG	4 cut(s)	141, 330, 557, 609
Hpy166II	GTNNAC	5 cut(s)	138, 252, 317, 464, 730
Hpy188I	TCNGA	9 cut(s)	99, 178, 289, 499, 619, 699, 777, 786, 793
Hpy8I	GTNNAC	5 cut(s)	138, 252, 317, 464, 730
Hpy99I	CGWCG	1 cut(s)	734
HpyAV	CCTTC	6 cut(s)	10, 173, 244, 266, 494, 788
HpyCH4III	ACNGT	6 cut(s)	37, 169, 226, 256, 321, 461
HpyCH4V	TGCA	9 cut(s)	146, 221, 335, 390, 397, 410, 446, 566, 578
HpyF10VI	GCNNNNNNNGC	8 cut(s)	152, 218, 227, 239, 347, 407, 587, 857
HpyF3I	CTNAG	3 cut(s)	281, 436, 631
Hsp92II	CATG	2 cut(s)	488, 655
HspAI	GCGC	1 cut(s)	339
Ksp22I	TGATCA	2 cut(s)	381, 648
Kzo9I	GATC	3 cut(s)	381, 494, 648
LmnI	GCTCC	4 cut(s)	44, 209, 217, 506
Lsp1109I	GCAGC	6 cut(s)	34, 217, 264, 458, 590, 844
LweI	GCATC	2 cut(s)	142, 757
MaeI	CTAG	2 cut(s)	56, 837
MalI	GATC	3 cut(s)	383, 496, 650
MboI	GATC	3 cut(s)	381, 494, 648
MboII	GAAGA	3 cut(s)	713, 724, 790
MhlI	GDGCHC	2 cut(s)	214, 511
MlyI	GAGTC	2 cut(s)	103, 672
MmeI	TCCRAC	2 cut(s)	19, 722
MnlI	CCTC	5 cut(s)	35, 254, 433, 497, 506
MseI	TTAA	2 cut(s)	159, 801
MspI	CCGG	4 cut(s)	141, 330, 557, 609
MspR9I	CCNGG	3 cut(s)	120, 557, 558
MvaI	CCWGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	8 cut(s)	152, 218, 227, 239, 347, 407, 587, 857
NciI	CCSGG	2 cut(s)	557, 558
NdeII	GATC	3 cut(s)	381, 494, 648
NlaIII	CATG	2 cut(s)	488, 655
NlaIV	GGNNCC	2 cut(s)	184, 421
PfeI	GAWTC	1 cut(s)	781
PflFI	GACNNNGTC	1 cut(s)	886
PinAI	ACCGGT	1 cut(s)	140
PkrI	GCNGC	6 cut(s)	49, 232, 279, 448, 580, 859
PleI	GAGTC	2 cut(s)	103, 671
PpsI	GAGTC	2 cut(s)	103, 671
PshAI	GACNNNNGTC	1 cut(s)	640
Psp124BI	GAGCTC	1 cut(s)	214
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	2 cut(s)	184, 421
PspPI	GGNCC	2 cut(s)	464, 824
PstNI	CAGNNNCTG	2 cut(s)	35, 341
PsyI	GACNNNGTC	1 cut(s)	886
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	728
SaqAI	TTAA	2 cut(s)	159, 801
SatI	GCNGC	6 cut(s)	48, 231, 278, 447, 579, 858
Sau3AI	GATC	3 cut(s)	381, 494, 648
Sau96I	GGNCC	2 cut(s)	464, 824
SchI	GAGTC	2 cut(s)	103, 672
ScrFI	CCNGG	3 cut(s)	120, 557, 558
SduI	GDGCHC	2 cut(s)	214, 511
SfaNI	GCATC	2 cut(s)	142, 757
SgrAI	CRCCGGYG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	464, 824
SmaI	CCCGGG	1 cut(s)	558
SpeI	ACTAGT	1 cut(s)	55
SsiI	CCGC	5 cut(s)	5, 155, 242, 598, 656
SspMI	CTAG	2 cut(s)	56, 837
SstI	GAGCTC	1 cut(s)	214
StyD4I	CCNGG	3 cut(s)	118, 555, 556
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	6 cut(s)	37, 169, 226, 256, 321, 461
TaqI	TCGA	3 cut(s)	150, 729, 761
TfiI	GAWTC	1 cut(s)	781
Tru1I	TTAA	2 cut(s)	159, 801
Tru9I	TTAA	2 cut(s)	159, 801
TscAI	CASTG	2 cut(s)	259, 444
TseI	GCWGC	6 cut(s)	47, 230, 277, 446, 578, 857
TspMI	CCCGGG	1 cut(s)	556
TspRI	CASTG	2 cut(s)	259, 444
Tth111I	GACNNNGTC	1 cut(s)	886
VpaK11BI	GGWCC	2 cut(s)	464, 824
XmaI	CCCGGG	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	729
XspI	CTAG	2 cut(s)	56, 837

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.