Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009187

Physical Location & Seq

Genomic Coordinates Reverse (-)

3395040 .. 3396093

Gene Structure 1054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g02800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGGAGCTCCACTTGCCACTGTTGCTGCCTTCAATGCTGTCCTCTTCACAGTAAGGGGGCAAATGGAGACATTATTGAGGTCTCAACCTGGTGCCCCGCTTACAGTTAGCCAGCAGGTCATTTGTGGGGCAGGGGCTGGAGTAGCTGTGTCCTTTCTGGCATGCCCCACTGAGTTGATCAAGTGCAGGCTGCAAGCCCAGAGTGCATTGGGGGACGCTGGCTCAGTGAGTGGTGCAGTGAAGTATGGAGGGCCGTTGGATGTGGCCAAGCAGGTACTTAGGTCGGAAGGTGGTGCGAGGGGTCTGTTCAAGGGCTTGGTTCCTACTTTGGCACGAGAAATACCTGGAAATGCTGCAATGTTTGGTGTCTATGAAGCCCTCAAGCAGTTCTTTGCTGGAGGCCAGGACACTTCCGGGTTGGGAAGAGGATCTCTGATTGTAGCTGGAGGATTGGGGGGAGCAGCCTTCTGGGCTTCCGTCTACCCAACTGATGTTGTCAAGAGTGTACTTCAGGTAGATGATTTCAAAAATCCCAAGTATTCGGGGTCAGTTGATGCCTTTAAAAAGATTCTTGCCTCAGAGGGAGTCAAAGGCCTCTATAGGGGCTTTGGACCAGCTATGGCTAGAAGTGTTCCAGCTAACGCAGCATGCTTCTTGGCATATGAGGTCACGAGGTCAAGTTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009507 GO:0009536 GO:0015075 GO:0015171 GO:0015179 GO:0015238 GO:0015318 GO:0015711 GO:0015807 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903352 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

230

Amino Acids

23.38

Weight (kDa)

9.36

Isoelectric Point (pI)

32.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46800 AT5G46800 AT5G46800
fragaria_vesca	FvH4_7g06810 FvH4_7g06810 FvH4_7g06810
malus_domestica	MD06G1033900.v1.1 MD16G1274700.v1.1
prunus_persica	Prupe.8G063200_v2.0.a1 Prupe.8G063200_v2.0.a1
pyrus_communis	pycom06g02800 pycom16g24480
rosa_chinensis	RchiOBHm_Chr7g0209661
rosa_laevigata	RLG00000003106
rosa_multiflora	Rmu_sc0021920.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249170
rosa_rugosa	Rorug07G0115100
rosa_samantha	Rh7AG248800 Rh7BG242800 Rh7CG264700 Rh7DG254700
rosa_wichuraiana	Rw7G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	106, 262
AccB1I	GGYRCC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	480
AciI	CCGC	1 cut(s)	98
AclWI	GGATC	1 cut(s)	436
AcoI	YGGCCR	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	2 cut(s)	276, 507
AfiI	CCNNNNNNNGG	1 cut(s)	601
AgsI	TTSAA	3 cut(s)	34, 310, 526
AjnI	CCWGG	3 cut(s)	88, 343, 402
AluBI	AGCT	5 cut(s)	8, 146, 443, 617, 638
AluI	AGCT	5 cut(s)	8, 146, 443, 617, 638
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	62, 87
AlwI	GGATC	1 cut(s)	436
AlwNI	CAGNNNCTG	1 cut(s)	137
AoxI	GGCC	4 cut(s)	251, 264, 400, 592
ApeKI	GCWGC	5 cut(s)	26, 190, 353, 461, 644
AspS9I	GGNCC	2 cut(s)	251, 611
AsuC2I	CCSGG	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	611
BaeGI	GKGCMC	1 cut(s)	97
BaeI	ACNNNNGTAYC	2 cut(s)	266, 299
BalI	TGGCCA	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	10
BauI	CACGAG	2 cut(s)	333, 670
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	5 cut(s)	13, 177, 340, 473, 656
BceAI	ACGGC	1 cut(s)	238
BciT130I	CCWGG	3 cut(s)	90, 345, 404
BclI	TGATCA	1 cut(s)	177
BcnI	CCSGG	1 cut(s)	415
BcoDI	GTCTC	2 cut(s)	62, 87
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	1 cut(s)	598
BfuAI	ACCTGC	2 cut(s)	106, 262
BglI	GCCNNNNNGGC	1 cut(s)	470
BisI	GCNGC	5 cut(s)	27, 191, 354, 462, 645
BlsI	GCNGC	5 cut(s)	28, 192, 355, 463, 646
Bme1390I	CCNGG	4 cut(s)	90, 345, 404, 415
Bme18I	GGWCC	1 cut(s)	611
BmgT120I	GGNCC	2 cut(s)	251, 611
BmiI	GGNNCC	2 cut(s)	94, 321
BmrFI	CCNGG	4 cut(s)	90, 345, 404, 415
BmsI	GCATC	1 cut(s)	544
BpmI	CTGGAG	3 cut(s)	159, 417, 465
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	1 cut(s)	415
BsaI	GGTCTC	1 cut(s)	87
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	601
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	3 cut(s)	90, 345, 404
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	601
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	3 cut(s)	162, 237, 591
BseSI	GKGCMC	1 cut(s)	97
BseXI	GCAGC	5 cut(s)	13, 177, 340, 473, 656
BsgI	GTGCAG	2 cut(s)	205, 255
BshFI	GGCC	4 cut(s)	253, 266, 402, 594
BshNI	GGYRCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	414
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	1 cut(s)	601
BsmAI	GTCTC	2 cut(s)	62, 87
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	4 cut(s)	253, 266, 402, 594
Bso31I	GGTCTC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	10, 97
Bsp143I	GATC	2 cut(s)	177, 428
BspACI	CCGC	1 cut(s)	98
BspANI	GGCC	4 cut(s)	253, 266, 402, 594
BspCNI	CTCAG	3 cut(s)	163, 236, 590
BspLI	GGNNCC	2 cut(s)	94, 321
BspMI	ACCTGC	2 cut(s)	106, 262
BspPI	GGATC	1 cut(s)	436
BspT107I	GGYRCC	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	87
BsrDI	GCAATG	1 cut(s)	363
BssMI	GATC	2 cut(s)	177, 428
BssSI	CACGAG	2 cut(s)	333, 670
Bst2BI	CACGAG	2 cut(s)	333, 670
Bst2UI	CCWGG	3 cut(s)	90, 345, 404
Bst4CI	ACNGT	3 cut(s)	22, 52, 106
Bst6I	CTCTTC	2 cut(s)	50, 418
BstC8I	GCNNGC	6 cut(s)	113, 163, 188, 195, 220, 649
BstDEI	CTNAG	4 cut(s)	171, 223, 278, 577
BstF5I	GGATG	1 cut(s)	265
BstKTI	GATC	2 cut(s)	180, 431
BstMAI	GTCTC	2 cut(s)	62, 87
BstMBI	GATC	2 cut(s)	177, 428
BstMWI	GCNNNNNNNGC	7 cut(s)	14, 23, 35, 143, 203, 470, 644
BstNI	CCWGG	3 cut(s)	90, 345, 404
BstNSI	RCATGY	2 cut(s)	165, 651
BstSCI	CCNGG	4 cut(s)	88, 343, 402, 413
BstSFI	CTRYAG	1 cut(s)	598
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	5 cut(s)	13, 177, 340, 473, 656
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	4 cut(s)	253, 266, 402, 594
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	4 cut(s)	18, 168, 231, 243
BveI	ACCTGC	2 cut(s)	106, 262
Cac8I	GCNNGC	6 cut(s)	113, 163, 188, 195, 220, 649
CaiI	CAGNNNCTG	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	251, 611
CseI	GACGC	1 cut(s)	224
CsiI	ACCWGGT	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	275, 506
CviAII	CATG	2 cut(s)	162, 648
CviQI	GTAC	2 cut(s)	275, 506
DdeI	CTNAG	4 cut(s)	171, 223, 278, 577
DpnI	GATC	2 cut(s)	179, 430
DpnII	GATC	2 cut(s)	177, 428
DraI	TTTAAA	1 cut(s)	562
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	2 cut(s)	50, 418
EarI	CTCTTC	2 cut(s)	50, 418
Ecl136II	GAGCTC	1 cut(s)	8
Eco147I	AGGCCT	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	611
Eco53kI	GAGCTC	1 cut(s)	8
Eco57I	CTGAAG	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	8
EcoRII	CCWGG	3 cut(s)	88, 343, 402
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	2 cut(s)	165, 651
FaiI	YATR	8 cut(s)	163, 246, 372, 600, 620, 649, 661, 663
FalI	AAGNNNNNCTT	2 cut(s)	374, 406
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	2 cut(s)	161, 647
FauI	CCCGC	1 cut(s)	105
FauNDI	CATATG	1 cut(s)	661
FbaI	TGATCA	1 cut(s)	177
FblI	GTMKAC	1 cut(s)	480
Fnu4HI	GCNGC	5 cut(s)	27, 191, 354, 462, 645
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	5 cut(s)	27, 191, 354, 462, 645
FspBI	CTAG	1 cut(s)	624
GluI	GCNGC	5 cut(s)	27, 191, 354, 462, 645
GsuI	CTGGAG	3 cut(s)	159, 417, 465
HaeIII	GGCC	4 cut(s)	253, 266, 402, 594
HapII	CCGG	1 cut(s)	414
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	2 cut(s)	165, 651
HinfI	GANTC	2 cut(s)	568, 585
HpaII	CCGG	1 cut(s)	414
Hpy166II	GTNNAC	2 cut(s)	481, 506
Hpy188I	TCNGA	3 cut(s)	286, 435, 580
Hpy188III	TCNNGA	2 cut(s)	499, 670
Hpy8I	GTNNAC	2 cut(s)	481, 506
HpyAV	CCTTC	3 cut(s)	40, 281, 475
HpyCH4III	ACNGT	3 cut(s)	22, 52, 106
HpyCH4V	TGCA	5 cut(s)	186, 193, 206, 236, 356
HpyF10VI	GCNNNNNNNGC	7 cut(s)	14, 23, 35, 143, 203, 470, 644
HpyF3I	CTNAG	4 cut(s)	171, 223, 278, 577
Hsp92II	CATG	2 cut(s)	165, 651
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	177, 428
LmnI	GCTCC	3 cut(s)	5, 13, 458
Lsp1109I	GCAGC	5 cut(s)	13, 177, 340, 473, 656
LweI	GCATC	1 cut(s)	544
MabI	ACCWGGT	1 cut(s)	88
MaeI	CTAG	1 cut(s)	624
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	2 cut(s)	179, 430
MboI	GATC	2 cut(s)	177, 428
MboII	GAAGA	2 cut(s)	37, 435
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	2 cut(s)	10, 97
MlsI	TGGCCA	1 cut(s)	266
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	594
MmeI	TCCRAC	2 cut(s)	237, 264
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	1 cut(s)	561
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	1 cut(s)	414
MspR9I	CCNGG	4 cut(s)	90, 345, 404, 415
MvaI	CCWGG	3 cut(s)	90, 345, 404
MwoI	GCNNNNNNNGC	7 cut(s)	14, 23, 35, 143, 203, 470, 644
NciI	CCSGG	1 cut(s)	415
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	2 cut(s)	177, 428
NlaIII	CATG	2 cut(s)	165, 651
NlaIV	GGNNCC	2 cut(s)	94, 321
NmuCI	GTSAC	1 cut(s)	667
NspI	RCATGY	2 cut(s)	165, 651
PaeI	GCATGC	2 cut(s)	165, 651
PceI	AGGCCT	1 cut(s)	594
PfeI	GAWTC	1 cut(s)	568
PkrI	GCNGC	5 cut(s)	28, 192, 355, 463, 646
PleI	GAGTC	1 cut(s)	593
PpsI	GAGTC	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	10
Psp6I	CCWGG	3 cut(s)	88, 343, 402
PspGI	CCWGG	3 cut(s)	88, 343, 402
PspN4I	GGNNCC	2 cut(s)	94, 321
PspPI	GGNCC	2 cut(s)	251, 611
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	428
RsaI	GTAC	2 cut(s)	276, 507
RsaNI	GTAC	2 cut(s)	275, 506
SacI	GAGCTC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	5 cut(s)	27, 191, 354, 462, 645
Sau3AI	GATC	2 cut(s)	177, 428
Sau96I	GGNCC	2 cut(s)	251, 611
SchI	GAGTC	1 cut(s)	594
ScrFI	CCNGG	4 cut(s)	90, 345, 404, 415
SduI	GDGCHC	2 cut(s)	10, 97
SexAI	ACCWGGT	1 cut(s)	88
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	598
SinI	GGWCC	1 cut(s)	611
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
SphI	GCATGC	2 cut(s)	165, 651
SseBI	AGGCCT	1 cut(s)	594
SsiI	CCGC	1 cut(s)	98
SspMI	CTAG	1 cut(s)	624
SstI	GAGCTC	1 cut(s)	10
StuI	AGGCCT	1 cut(s)	594
StyD4I	CCNGG	4 cut(s)	88, 343, 402, 413
TaaI	ACNGT	3 cut(s)	22, 52, 106
TatI	WGTACW	1 cut(s)	505
TfiI	GAWTC	1 cut(s)	568
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	4 cut(s)	25, 175, 231, 243
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	5 cut(s)	26, 190, 353, 461, 644
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	4 cut(s)	25, 175, 231, 243
VpaK11BI	GGWCC	1 cut(s)	611
XceI	RCATGY	2 cut(s)	165, 651
XmiI	GTMKAC	1 cut(s)	480
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.