Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0009187

Physical Location & Seq

Genomic Coordinates Forward (+)

8968335 .. 8969288

Gene Structure 954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0115100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAGGAGAACCAGACTTTCGAGACGGATCTGATTCACGCCATTTTCAAGCTCGTCTGGTCCAGAAGAGCTCTCGAGCGTCAGTTACTTGAAGGCACCGATGCTTTGGACGGCGAGGTGGGAGCTGGAACGTCCAAGAAAAATCGGCCGACGTCAGCTAATGCGAATGCGTTGAAATTGAGTTGTGAGCTTCTCCGAAACTTTGTCACAGAGGCTGTGCAGCGTGCTGCTACGATTGCTGAGGCGGAGGGCACTGATAAGATTGAGGCAACTCATTTGGAGCGGATTCTCCCGCAGTTGCTTTTGGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009507 GO:0009536 GO:0015075 GO:0015171 GO:0015179 GO:0015238 GO:0015318 GO:0015711 GO:0015807 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903352 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

104

Amino Acids

11.56

Weight (kDa)

5.0

Isoelectric Point (pI)

30.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CENP-X	PF09415	47 - 104	6.4e-16	CENP-S associating Centromere protein X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0009187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46800 AT5G46800 AT5G46800
fragaria_vesca	FvH4_7g06810 FvH4_7g06810 FvH4_7g06810
malus_domestica	MD06G1033900.v1.1 MD16G1274700.v1.1
prunus_persica	Prupe.8G063200_v2.0.a1 Prupe.8G063200_v2.0.a1
pyrus_communis	pycom06g02800 pycom16g24480
rosa_chinensis	RchiOBHm_Chr7g0209661
rosa_laevigata	RLG00000003106
rosa_multiflora	Rmu_sc0021920.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249170
rosa_rugosa	Rorug07G0115100
rosa_samantha	Rh7AG248800 Rh7BG242800 Rh7CG264700 Rh7DG254700
rosa_wichuraiana	Rw7G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	155
AccB1I	GGYRCC	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	283
AciI	CCGC	3 cut(s)	245, 283, 293
AclWI	GGATC	1 cut(s)	36
AcoI	YGGCCR	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	152
AgsI	TTSAA	3 cut(s)	49, 92, 175
AluBI	AGCT	5 cut(s)	52, 71, 125, 158, 190
AluI	AGCT	5 cut(s)	52, 71, 125, 158, 190
Alw21I	GWGCWC	1 cut(s)	73
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	36
AlwNI	CAGNNNCTG	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	74
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	2 cut(s)	220, 227
AspS9I	GGNCC	1 cut(s)	60
AvaI	CYCGRG	1 cut(s)	74
AvaII	GGWCC	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	95
BanII	GRGCYC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	2 cut(s)	214, 232
BceAI	ACGGC	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	17
BisI	GCNGC	2 cut(s)	221, 228
BlsI	GCNGC	2 cut(s)	222, 229
Bme18I	GGWCC	1 cut(s)	60
BmeT110I	CYCGRG	1 cut(s)	74
BmgT120I	GGNCC	1 cut(s)	60
BmiI	GGNNCC	1 cut(s)	97
BmsI	GCATC	1 cut(s)	91
Bpu10I	CCTNAGC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	152
BseMII	CTCAG	1 cut(s)	231
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	254
BseX3I	CGGCCG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	214, 232
BsgI	GTGCAG	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	149
BshFI	GGCC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	73
BsiHKCI	CYCGRG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	17
BsmBI	CGTCTC	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	1 cut(s)	74
Bsp1286I	GDGCHC	2 cut(s)	73, 254
Bsp143I	GATC	1 cut(s)	28
BspACI	CCGC	3 cut(s)	245, 283, 293
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	283
BssMI	GATC	1 cut(s)	28
BssNI	GRCGYC	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	61
BstACI	GRCGYC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	240
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	1 cut(s)	28
BstMCI	CGRYCG	1 cut(s)	149
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstSLI	GKGCMC	1 cut(s)	254
BstV1I	GCAGC	2 cut(s)	214, 232
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BstZI	CGGCCG	1 cut(s)	146
BsuRI	GGCC	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	60
CseI	GACGC	1 cut(s)	68
CviJI	RGCY	7 cut(s)	52, 71, 125, 148, 158, 190, 215
CviKI_1	RGCY	7 cut(s)	52, 71, 125, 148, 158, 190, 215
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
EaeI	YGGCCR	1 cut(s)	146
EagI	CGGCCG	1 cut(s)	146
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
EciI	GGCGGA	1 cut(s)	260
Ecl136II	GAGCTC	1 cut(s)	71
EclXI	CGGCCG	1 cut(s)	146
Eco24I	GRGCYC	1 cut(s)	73
Eco47I	GGWCC	1 cut(s)	60
Eco52I	CGGCCG	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	71
Eco88I	CYCGRG	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	71
EcoT38I	GRGCYC	1 cut(s)	73
Esp3I	CGTCTC	1 cut(s)	17
FauI	CCCGC	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	221, 228
FriOI	GRGCYC	1 cut(s)	73
Fsp4HI	GCNGC	2 cut(s)	221, 228
GluI	GCNGC	2 cut(s)	221, 228
HaeIII	GGCC	1 cut(s)	148
HgaI	GACGC	1 cut(s)	68
Hin1I	GRCGYC	1 cut(s)	152
HinfI	GANTC	2 cut(s)	34, 286
Hpy188I	TCNGA	2 cut(s)	33, 197
Hpy188III	TCNNGA	3 cut(s)	22, 63, 74
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	86
HpyCH4IV	ACGT	2 cut(s)	131, 152
HpyCH4V	TGCA	1 cut(s)	220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	2 cut(s)	131, 152
Hsp92I	GRCGYC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	28
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	122, 280
LpnPI	CCDG	4 cut(s)	26, 43, 76, 111
Lsp1109I	GCAGC	2 cut(s)	214, 232
LweI	GCATC	1 cut(s)	91
MaeII	ACGT	2 cut(s)	131, 152
MaeIII	GTNAC	2 cut(s)	84, 205
MalI	GATC	1 cut(s)	30
MbiI	CCGCTC	1 cut(s)	283
MboI	GATC	1 cut(s)	28
MboII	GAAGA	1 cut(s)	78
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	2 cut(s)	73, 254
MluCI	AATT	1 cut(s)	176
MnlI	CCTC	5 cut(s)	109, 205, 235, 241, 259
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	1 cut(s)	28
NlaIV	GGNNCC	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	74
PciSI	GCTCTTC	1 cut(s)	61
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	2 cut(s)	34, 286
PkrI	GCNGC	2 cut(s)	222, 229
Psp124BI	GAGCTC	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	97
PspPI	GGNCC	1 cut(s)	60
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	28
SacI	GAGCTC	1 cut(s)	73
SapI	GCTCTTC	1 cut(s)	61
SatI	GCNGC	2 cut(s)	221, 228
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	60
SduI	GDGCHC	2 cut(s)	73, 254
SetI	ASST	8 cut(s)	54, 73, 120, 127, 134, 155, 160, 192
SfaNI	GCATC	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	74
SinI	GGWCC	1 cut(s)	60
SlaI	CTCGAG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	1 cut(s)	176
SsiI	CCGC	3 cut(s)	245, 283, 293
SstI	GAGCTC	1 cut(s)	73
TaiI	ACGT	2 cut(s)	134, 155
TaqI	TCGA	2 cut(s)	21, 75
TasI	AATT	1 cut(s)	176
TfiI	GAWTC	2 cut(s)	34, 286
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	220, 227
Tsp45I	GTSAC	1 cut(s)	205
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	60
XhoI	CTCGAG	1 cut(s)	74
ZraI	GACGTC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.