Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0009187

Physical Location & Seq

Genomic Coordinates Forward (+)

36716292 .. 36719757

Gene Structure 3466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1274700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGGAGGGGTAGCACAGTTAGTAGTTGGCCACCCATTTGATACCATTAAGGTTAAACTCCAAAGCCAGCCTACTCCACTTCCAGGGCAACCTCCCAAGTTCTCAGGTGCTATTGATGCTGTCAAGCAGACATTATCGGCTGAGGGAGCTGGGGGTCTCTACAAAGGAATGGGAGCTCCACTTGCCACTGTTGCAGCCTTCAATGCTGTCCTCTTCACCGTAAAAGGGCAAATGGAGACATTGTTAAGGTCTCAACCTGGTGTCCCGCTTACAGTTAGTCAGCAGGTCATTTGTGGGGGAGGGGCTGGAGTAGCTGTGTCCTTTCTGGCATGCCCTACTGAGTTGATCAAGTGCAGGTTGCAAGCCCAGAGTGCAATGGGGGATGCTGGCTCAGTGGGTGGCGCAGTGAAGTATGGGGGGCCGTTGGATGTGGCCAAGCAGGTACTTAGGTCGGAAGGTGGTGTGAGGGGTCTGTTCAAGGGGTTGGTTCCTACTATGGCACGCGAAATACCTGGAAATGCTGCAATGTTTGGTGTCTATGAAGCCCTCAAGCAGTTCTTTGCTGGAGGCCAGGACACTTCCGGCTTGGGAAGAGGATCTTTGATAGTGGCTGGAGGATTGGGGGGAGCCGCGTTCTGGGGCTTCGTCTACCCAACTGATGTTGTCAAGAGTGTAATCCAGGTAGATGATTTCAAAAATCCCAAGTATTCGGGGTCAGTTGATGCCTTTAAAAAGATTCTTGCCTCCGAGGGAGTCAAAGGCCTCTATAAGGGCTTTGGACCAGCTATGGGTAGAAGTATTCCAGCTAATGCAGCATGCTTCTTGGCCTATGAGGTCACAAGGTCAAGTTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009507 GO:0009536 GO:0015075 GO:0015171 GO:0015179 GO:0015238 GO:0015318 GO:0015711 GO:0015807 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903352 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

286

Amino Acids

29.09

Weight (kDa)

9.41

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	2 - 84	2.4e-15	Mitochondrial carrier protein
Mito_carr	PF00153	90 - 188	5.5e-23	Mitochondrial carrier protein
Mito_carr	PF00153	201 - 283	9.1e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46800 AT5G46800 AT5G46800
fragaria_vesca	FvH4_7g06810 FvH4_7g06810 FvH4_7g06810
malus_domestica	MD06G1033900.v1.1 MD16G1274700.v1.1
prunus_persica	Prupe.8G063200_v2.0.a1 Prupe.8G063200_v2.0.a1
pyrus_communis	pycom06g02800 pycom16g24480
rosa_chinensis	RchiOBHm_Chr7g0209661
rosa_laevigata	RLG00000003106
rosa_multiflora	Rmu_sc0021920.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249170
rosa_rugosa	Rorug07G0115100
rosa_samantha	Rh7AG248800 Rh7BG242800 Rh7CG264700 Rh7DG254700
rosa_wichuraiana	Rw7G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	274, 345, 430
AccI	GTMKAC	1 cut(s)	648
AccII	CGCG	2 cut(s)	504, 632
AciI	CCGC	2 cut(s)	266, 630
AclWI	GGATC	1 cut(s)	604
AcoI	YGGCCR	2 cut(s)	28, 432
AfaI	GTAC	1 cut(s)	444
AfiI	CCNNNNNNNGG	5 cut(s)	83, 225, 636, 769, 788
AgsI	TTSAA	3 cut(s)	202, 478, 694
AjnI	CCWGG	5 cut(s)	82, 256, 511, 570, 678
AluBI	AGCT	5 cut(s)	149, 176, 314, 785, 806
AluI	AGCT	5 cut(s)	149, 176, 314, 785, 806
Alw21I	GWGCWC	1 cut(s)	178
Alw26I	GTCTC	3 cut(s)	161, 230, 255
AlwI	GGATC	1 cut(s)	604
AoxI	GGCC	6 cut(s)	28, 419, 432, 568, 760, 825
ApeKI	GCWGC	3 cut(s)	194, 521, 812
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	2 cut(s)	419, 779
AsuHPI	GGTGA	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	779
BaeI	ACNNNNGTAYC	2 cut(s)	434, 467
BalI	TGGCCA	2 cut(s)	30, 434
BanII	GRGCYC	1 cut(s)	178
Bbv12I	GWGCWC	1 cut(s)	178
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	206, 508, 824
BceAI	ACGGC	1 cut(s)	406
BciT130I	CCWGG	5 cut(s)	84, 258, 513, 572, 680
BclI	TGATCA	1 cut(s)	345
BcoDI	GTCTC	3 cut(s)	161, 230, 255
BfuAI	ACCTGC	3 cut(s)	274, 345, 430
BisI	GCNGC	4 cut(s)	195, 522, 630, 813
BlsI	GCNGC	4 cut(s)	196, 523, 631, 814
Bme1390I	CCNGG	5 cut(s)	84, 258, 513, 572, 680
Bme18I	GGWCC	1 cut(s)	779
BmgT120I	GGNCC	2 cut(s)	419, 779
BmiI	GGNNCC	3 cut(s)	420, 489, 628
BmrFI	CCNGG	5 cut(s)	84, 258, 513, 572, 680
BmsI	GCATC	3 cut(s)	106, 373, 712
BpmI	CTGGAG	3 cut(s)	327, 585, 633
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	533
BsaI	GGTCTC	2 cut(s)	161, 255
BsaJI	CCNNGG	2 cut(s)	83, 747
BsaXI	ACNNNNNCTCC	4 cut(s)	227, 257, 300, 330
Bsc4I	CCNNNNNNNGG	5 cut(s)	83, 225, 636, 769, 788
Bse3DI	GCAATG	2 cut(s)	381, 531
BseBI	CCWGG	5 cut(s)	84, 258, 513, 572, 680
BseDI	CCNNGG	2 cut(s)	83, 747
BseGI	GGATG	2 cut(s)	388, 433
BseLI	CCNNNNNNNGG	5 cut(s)	83, 225, 636, 769, 788
BseMI	GCAATG	2 cut(s)	381, 531
BseMII	CTCAG	4 cut(s)	117, 132, 330, 405
BseXI	GCAGC	3 cut(s)	206, 508, 824
BseYI	CCCAGC	1 cut(s)	149
BsgI	GTGCAG	1 cut(s)	373
Bsh1236I	CGCG	2 cut(s)	504, 632
BshFI	GGCC	6 cut(s)	30, 421, 434, 570, 762, 827
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	582
BslFI	GGGAC	1 cut(s)	248
BslI	CCNNNNNNNGG	5 cut(s)	83, 225, 636, 769, 788
BsmAI	GTCTC	3 cut(s)	161, 230, 255
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	6 cut(s)	30, 421, 434, 570, 762, 827
Bso31I	GGTCTC	2 cut(s)	161, 255
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	345, 596
BspACI	CCGC	2 cut(s)	266, 630
BspANI	GGCC	6 cut(s)	30, 421, 434, 570, 762, 827
BspCNI	CTCAG	4 cut(s)	116, 133, 331, 404
BspFNI	CGCG	2 cut(s)	504, 632
BspLI	GGNNCC	3 cut(s)	420, 489, 628
BspMI	ACCTGC	3 cut(s)	274, 345, 430
BspPI	GGATC	1 cut(s)	604
BspTNI	GGTCTC	2 cut(s)	161, 255
BsrDI	GCAATG	2 cut(s)	381, 531
BssECI	CCNNGG	2 cut(s)	83, 747
BssMI	GATC	2 cut(s)	345, 596
Bst2UI	CCWGG	5 cut(s)	84, 258, 513, 572, 680
Bst4CI	ACNGT	4 cut(s)	18, 190, 220, 274
Bst6I	CTCTTC	2 cut(s)	218, 586
BstC8I	GCNNGC	6 cut(s)	68, 331, 363, 388, 502, 817
BstDEI	CTNAG	5 cut(s)	103, 141, 339, 391, 446
BstENI	CCTNNNNNAGG	1 cut(s)	767
BstF5I	GGATG	2 cut(s)	388, 433
BstFNI	CGCG	2 cut(s)	504, 632
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	2 cut(s)	348, 599
BstMAI	GTCTC	3 cut(s)	161, 230, 255
BstMBI	GATC	2 cut(s)	345, 596
BstMWI	GCNNNNNNNGC	8 cut(s)	116, 146, 182, 191, 203, 311, 371, 812
BstNI	CCWGG	5 cut(s)	84, 258, 513, 572, 680
BstNSI	RCATGY	2 cut(s)	333, 819
BstSCI	CCNGG	5 cut(s)	82, 256, 511, 570, 678
BstUI	CGCG	2 cut(s)	504, 632
BstV1I	GCAGC	3 cut(s)	206, 508, 824
BstX2I	RGATCY	1 cut(s)	596
BstYI	RGATCY	1 cut(s)	596
BsuRI	GGCC	6 cut(s)	30, 421, 434, 570, 762, 827
BtsCI	GGATG	2 cut(s)	388, 433
BtsI	GCAGTG	1 cut(s)	411
BtsIMutI	CAGTG	3 cut(s)	186, 399, 411
BveI	ACCTGC	3 cut(s)	274, 345, 430
Cac8I	GCNNGC	6 cut(s)	68, 331, 363, 388, 502, 817
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	2 cut(s)	419, 779
CsiI	ACCWGGT	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	2 cut(s)	330, 816
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	5 cut(s)	103, 141, 339, 391, 446
DpnI	GATC	2 cut(s)	347, 598
DpnII	GATC	2 cut(s)	345, 596
DraI	TTTAAA	1 cut(s)	730
EaeI	YGGCCR	2 cut(s)	28, 432
Eam1104I	CTCTTC	2 cut(s)	218, 586
EarI	CTCTTC	2 cut(s)	218, 586
Ecl136II	GAGCTC	1 cut(s)	176
Eco147I	AGGCCT	1 cut(s)	762
Eco24I	GRGCYC	1 cut(s)	178
Eco31I	GGTCTC	2 cut(s)	161, 255
Eco47I	GGWCC	1 cut(s)	779
Eco53kI	GAGCTC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	176
EcoNI	CCTNNNNNAGG	1 cut(s)	767
EcoRII	CCWGG	5 cut(s)	82, 256, 511, 570, 678
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	2 cut(s)	333, 819
FaiI	YATR	8 cut(s)	331, 414, 497, 540, 768, 788, 817, 831
FalI	AAGNNNNNCTT	4 cut(s)	542, 574, 583, 615
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	2 cut(s)	329, 815
FauI	CCCGC	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	345
FblI	GTMKAC	1 cut(s)	648
Fnu4HI	GCNGC	4 cut(s)	195, 522, 630, 813
FokI	GGATG	2 cut(s)	395, 440
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	4 cut(s)	195, 522, 630, 813
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	4 cut(s)	195, 522, 630, 813
GsaI	CCCAGC	1 cut(s)	153
GsuI	CTGGAG	3 cut(s)	327, 585, 633
HaeIII	GGCC	6 cut(s)	30, 421, 434, 570, 762, 827
HapII	CCGG	1 cut(s)	582
HhaI	GCGC	1 cut(s)	404
Hin1II	CATG	2 cut(s)	333, 819
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	2 cut(s)	736, 753
HpaII	CCGG	1 cut(s)	582
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	649
Hpy188I	TCNGA	2 cut(s)	454, 748
Hpy188III	TCNNGA	1 cut(s)	667
Hpy8I	GTNNAC	1 cut(s)	649
HpyAV	CCTTC	2 cut(s)	208, 449
HpyCH4III	ACNGT	4 cut(s)	18, 190, 220, 274
HpyCH4V	TGCA	6 cut(s)	194, 354, 361, 374, 524, 812
HpyF10VI	GCNNNNNNNGC	8 cut(s)	116, 146, 182, 191, 203, 311, 371, 812
HpyF3I	CTNAG	5 cut(s)	103, 141, 339, 391, 446
Hsp92II	CATG	2 cut(s)	333, 819
HspAI	GCGC	1 cut(s)	402
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	2 cut(s)	345, 596
LmnI	GCTCC	4 cut(s)	146, 173, 181, 626
Lsp1109I	GCAGC	3 cut(s)	206, 508, 824
LweI	GCATC	3 cut(s)	106, 373, 712
MabI	ACCWGGT	1 cut(s)	256
MaeIII	GTNAC	1 cut(s)	835
MalI	GATC	2 cut(s)	347, 598
MboI	GATC	2 cut(s)	345, 596
MboII	GAAGA	2 cut(s)	205, 603
MflI	RGATCY	1 cut(s)	596
MhlI	GDGCHC	1 cut(s)	178
MlsI	TGGCCA	2 cut(s)	30, 434
MluNI	TGGCCA	2 cut(s)	30, 434
MlyI	GAGTC	1 cut(s)	762
MmeI	TCCRAC	2 cut(s)	405, 432
Mox20I	TGGCCA	2 cut(s)	30, 434
MscI	TGGCCA	2 cut(s)	30, 434
MseI	TTAA	4 cut(s)	48, 54, 245, 729
Msp20I	TGGCCA	2 cut(s)	30, 434
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	5 cut(s)	84, 258, 513, 572, 680
MvaI	CCWGG	5 cut(s)	84, 258, 513, 572, 680
MvnI	CGCG	2 cut(s)	504, 632
MwoI	GCNNNNNNNGC	8 cut(s)	116, 146, 182, 191, 203, 311, 371, 812
NdeII	GATC	2 cut(s)	345, 596
NlaIII	CATG	2 cut(s)	333, 819
NlaIV	GGNNCC	3 cut(s)	420, 489, 628
NmuCI	GTSAC	1 cut(s)	835
NspI	RCATGY	2 cut(s)	333, 819
PaeI	GCATGC	2 cut(s)	333, 819
PceI	AGGCCT	1 cut(s)	762
PfeI	GAWTC	1 cut(s)	736
PkrI	GCNGC	4 cut(s)	196, 523, 631, 814
PleI	GAGTC	1 cut(s)	761
PpsI	GAGTC	1 cut(s)	761
Psp124BI	GAGCTC	1 cut(s)	178
Psp6I	CCWGG	5 cut(s)	82, 256, 511, 570, 678
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	5 cut(s)	82, 256, 511, 570, 678
PspN4I	GGNNCC	3 cut(s)	420, 489, 628
PspPI	GGNCC	2 cut(s)	419, 779
PsuI	RGATCY	1 cut(s)	596
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	4 cut(s)	48, 54, 245, 729
SatI	GCNGC	4 cut(s)	195, 522, 630, 813
Sau3AI	GATC	2 cut(s)	345, 596
Sau96I	GGNCC	2 cut(s)	419, 779
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	5 cut(s)	84, 258, 513, 572, 680
SduI	GDGCHC	1 cut(s)	178
SexAI	ACCWGGT	1 cut(s)	256
SfaNI	GCATC	3 cut(s)	106, 373, 712
SinI	GGWCC	1 cut(s)	779
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
SphI	GCATGC	2 cut(s)	333, 819
SseBI	AGGCCT	1 cut(s)	762
SsiI	CCGC	2 cut(s)	266, 630
SstI	GAGCTC	1 cut(s)	178
StuI	AGGCCT	1 cut(s)	762
StyD4I	CCNGG	5 cut(s)	82, 256, 511, 570, 678
TaaI	ACNGT	4 cut(s)	18, 190, 220, 274
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	1 cut(s)	736
Tru1I	TTAA	4 cut(s)	48, 54, 245, 729
Tru9I	TTAA	4 cut(s)	48, 54, 245, 729
TscAI	CASTG	3 cut(s)	193, 399, 411
TseFI	GTSAC	1 cut(s)	835
TseI	GCWGC	3 cut(s)	194, 521, 812
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	1 cut(s)	555
TspRI	CASTG	3 cut(s)	193, 399, 411
VpaK11BI	GGWCC	1 cut(s)	779
XagI	CCTNNNNNAGG	1 cut(s)	767
XceI	RCATGY	2 cut(s)	333, 819
XmiI	GTMKAC	1 cut(s)	648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.