Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009187

Physical Location & Seq

Genomic Coordinates Reverse (-)

4145067 .. 4149068

Gene Structure 4002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1033900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGCTTGAAGATGAAGGGATGGGGGAAGTAGTTAAGGACTTAGCAGCTGGGACTGTTGGAGGGGCAGCGCAGTTAGTAGTTGGCCACCCATTTGATACCATAAAGGTTAAACTGCAAAGCCAGCCTACTCCGCTCCCAGGACAACCTCCGAAGTTCTCAGGTGCTTTTGATGCTGTCAAGCAGACATTAGCTGCTGAGGGGGCAGGAGGTCTCTACAAAGGAATGGGAGCTCCACTTGCCACTGTTGCTGCCTTCAATGCTGTCCTCTTCACAGTAAGGGGGCAAATGGAGACATTATTGAGGTCTCAACCTGGTGCCCCACTTACAGTTAGCCAGCAGGTCATTTGTGGGGCGGGGGCTGGAGTAGCTGTGTCCTTTCTGGCATGCCCCACTGAGTTGATCAAGTGCAGGCTGCAAGCCCAGAGTGCATTGGGGGACGCTGGCTCAGTGAGTGGCGCAGTGAAGTATGGAGGGCCGTTGGATGTGGCCAAGCAGGTACTTAGGTCAGAAGGTGGTGCGAGGGGTCTGTTCAAGGGCTTGGTTCCTACCATGGCACGAGAAATACCTGGAAATGCTGCAATGTTTGGTGTCTACGAAGCCCTCAAGCAGTTCTTTGCTGGAAGCCAGGACACTTCCGGGTTGGGAAGAGGATCTCTGATTGTAGCTGGAGGATTGGGGGGAGCAGCCTTCTGGGCTTCCGTCTACCCAACTGATGTTGTCAAGAGTGTACTTCAGGTAGATGATTTCAAAAATCCCAAGTATTCGGGGTCAGTTGATGCCTTTAAAAAGATTCTTGCCTCAGAGGGAGTCAAAGGCCTCTATAAGGGCTTTGGACCAGCTATGGCTAGAAGTATTCCGGCTAACGCAGCATGCTTCTTGGCATATGAGGTCACAAGGTCAAGTTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009507 GO:0009536 GO:0015075 GO:0015171 GO:0015179 GO:0015238 GO:0015318 GO:0015711 GO:0015807 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903352 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

304

Amino Acids

30.89

Weight (kDa)

8.96

Isoelectric Point (pI)

32.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	10 - 101	7.4e-19	Mitochondrial carrier protein
Mito_carr	PF00153	108 - 207	2.3e-22	Mitochondrial carrier protein
Mito_carr	PF00153	219 - 301	8.8e-23	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46800 AT5G46800 AT5G46800
fragaria_vesca	FvH4_7g06810 FvH4_7g06810 FvH4_7g06810
malus_domestica	MD06G1033900.v1.1 MD16G1274700.v1.1
prunus_persica	Prupe.8G063200_v2.0.a1 Prupe.8G063200_v2.0.a1
pyrus_communis	pycom06g02800 pycom16g24480
rosa_chinensis	RchiOBHm_Chr7g0209661
rosa_laevigata	RLG00000003106
rosa_multiflora	Rmu_sc0021920.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249170
rosa_rugosa	Rorug07G0115100
rosa_samantha	Rh7AG248800 Rh7BG242800 Rh7CG264700 Rh7DG254700
rosa_wichuraiana	Rw7G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	328, 484
AccB1I	GGYRCC	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	133
AccI	GTMKAC	2 cut(s)	591, 702
AciI	CCGC	2 cut(s)	131, 353
AclWI	GGATC	1 cut(s)	658
AcoI	YGGCCR	2 cut(s)	82, 486
AcuI	CTGAAG	1 cut(s)	716
AfaI	GTAC	2 cut(s)	498, 729
AfiI	CCNNNNNNNGG	2 cut(s)	137, 823
AgsI	TTSAA	4 cut(s)	8, 256, 532, 748
AjnI	CCWGG	4 cut(s)	136, 310, 565, 624
AluBI	AGCT	6 cut(s)	47, 191, 230, 368, 665, 839
AluI	AGCT	6 cut(s)	47, 191, 230, 368, 665, 839
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	3 cut(s)	215, 284, 309
AlwI	GGATC	1 cut(s)	658
AoxI	GGCC	4 cut(s)	82, 473, 486, 814
ApeKI	GCWGC	8 cut(s)	44, 65, 191, 248, 412, 575, 683, 866
AspLEI	GCGC	2 cut(s)	70, 458
AspS9I	GGNCC	2 cut(s)	473, 833
AsuC2I	CCSGG	1 cut(s)	637
AvaII	GGWCC	1 cut(s)	833
BaeGI	GKGCMC	1 cut(s)	319
BaeI	ACNNNNGTAYC	2 cut(s)	488, 521
BalI	TGGCCA	2 cut(s)	84, 488
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	232
BauI	CACGAG	1 cut(s)	555
Bbv12I	GWGCWC	1 cut(s)	232
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	8 cut(s)	56, 77, 178, 235, 399, 562, 695, 878
BccI	CCATC	1 cut(s)	13
BceAI	ACGGC	1 cut(s)	460
BciT130I	CCWGG	4 cut(s)	138, 312, 567, 626
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	3 cut(s)	215, 284, 309
BfaI	CTAG	1 cut(s)	846
BfuAI	ACCTGC	2 cut(s)	328, 484
BglI	GCCNNNNNGGC	1 cut(s)	692
BisI	GCNGC	8 cut(s)	45, 66, 192, 249, 413, 576, 684, 867
BlsI	GCNGC	8 cut(s)	46, 67, 193, 250, 414, 577, 685, 868
Bme1390I	CCNGG	5 cut(s)	138, 312, 567, 626, 637
Bme18I	GGWCC	1 cut(s)	833
BmgT120I	GGNCC	2 cut(s)	473, 833
BmiI	GGNNCC	2 cut(s)	316, 543
BmrFI	CCNGG	5 cut(s)	138, 312, 567, 626, 637
BmsI	GCATC	2 cut(s)	160, 766
BpmI	CTGGAG	2 cut(s)	381, 687
Bpu10I	CCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	637
BsaI	GGTCTC	2 cut(s)	215, 309
BsaJI	CCNNGG	2 cut(s)	136, 549
BsaXI	ACNNNNNCTCC	2 cut(s)	354, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	137, 823
Bse3DI	GCAATG	1 cut(s)	585
BseBI	CCWGG	4 cut(s)	138, 312, 567, 626
BseDI	CCNNGG	2 cut(s)	136, 549
BseGI	GGATG	2 cut(s)	24, 487
BseLI	CCNNNNNNNGG	2 cut(s)	137, 823
BseMI	GCAATG	1 cut(s)	585
BseMII	CTCAG	5 cut(s)	171, 186, 384, 459, 813
BseSI	GKGCMC	1 cut(s)	319
BseXI	GCAGC	8 cut(s)	56, 77, 178, 235, 399, 562, 695, 878
BseYI	CCCAGC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	427
BshFI	GGCC	4 cut(s)	84, 475, 488, 816
BshNI	GGYRCC	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	2 cut(s)	636, 857
BslFI	GGGAC	2 cut(s)	64, 449
BslI	CCNNNNNNNGG	2 cut(s)	137, 823
BsmAI	GTCTC	3 cut(s)	215, 284, 309
BsmFI	GGGAC	2 cut(s)	64, 449
BsnI	GGCC	4 cut(s)	84, 475, 488, 816
Bso31I	GGTCTC	2 cut(s)	215, 309
Bsp1286I	GDGCHC	2 cut(s)	232, 319
Bsp143I	GATC	2 cut(s)	399, 650
Bsp19I	CCATGG	1 cut(s)	549
BspACI	CCGC	2 cut(s)	131, 353
BspANI	GGCC	4 cut(s)	84, 475, 488, 816
BspCNI	CTCAG	5 cut(s)	170, 187, 385, 458, 812
BspLI	GGNNCC	2 cut(s)	316, 543
BspMI	ACCTGC	2 cut(s)	328, 484
BspPI	GGATC	1 cut(s)	658
BspT107I	GGYRCC	1 cut(s)	314
BspTNI	GGTCTC	2 cut(s)	215, 309
BsrBI	CCGCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	585
BssECI	CCNNGG	2 cut(s)	136, 549
BssMI	GATC	2 cut(s)	399, 650
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	549
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	4 cut(s)	138, 312, 567, 626
Bst4CI	ACNGT	4 cut(s)	55, 244, 274, 328
Bst6I	CTCTTC	2 cut(s)	272, 640
BstC8I	GCNNGC	7 cut(s)	122, 335, 385, 410, 417, 442, 871
BstDEI	CTNAG	7 cut(s)	40, 157, 195, 393, 445, 500, 799
BstDSI	CCRYGG	1 cut(s)	549
BstENI	CCTNNNNNAGG	1 cut(s)	821
BstF5I	GGATG	2 cut(s)	24, 487
BstHHI	GCGC	2 cut(s)	70, 458
BstKTI	GATC	2 cut(s)	402, 653
BstMAI	GTCTC	3 cut(s)	215, 284, 309
BstMBI	GATC	2 cut(s)	399, 650
BstNI	CCWGG	4 cut(s)	138, 312, 567, 626
BstNSI	RCATGY	2 cut(s)	387, 873
BstSCI	CCNGG	5 cut(s)	136, 310, 565, 624, 635
BstSLI	GKGCMC	1 cut(s)	319
BstV1I	GCAGC	8 cut(s)	56, 77, 178, 235, 399, 562, 695, 878
BstX2I	RGATCY	1 cut(s)	650
BstYI	RGATCY	1 cut(s)	650
BsuRI	GGCC	4 cut(s)	84, 475, 488, 816
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	24, 487
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	4 cut(s)	240, 390, 453, 465
BveI	ACCTGC	2 cut(s)	328, 484
Cac8I	GCNNGC	7 cut(s)	122, 335, 385, 410, 417, 442, 871
CfoI	GCGC	2 cut(s)	70, 458
Cfr13I	GGNCC	2 cut(s)	473, 833
CseI	GACGC	1 cut(s)	446
CsiI	ACCWGGT	1 cut(s)	310
Csp6I	GTAC	2 cut(s)	497, 728
CviAII	CATG	3 cut(s)	384, 550, 870
CviQI	GTAC	2 cut(s)	497, 728
DdeI	CTNAG	7 cut(s)	40, 157, 195, 393, 445, 500, 799
DpnI	GATC	2 cut(s)	401, 652
DpnII	GATC	2 cut(s)	399, 650
DraI	TTTAAA	1 cut(s)	784
EaeI	YGGCCR	2 cut(s)	82, 486
Eam1104I	CTCTTC	2 cut(s)	272, 640
EarI	CTCTTC	2 cut(s)	272, 640
Ecl136II	GAGCTC	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	549
Eco147I	AGGCCT	1 cut(s)	816
Eco24I	GRGCYC	1 cut(s)	232
Eco31I	GGTCTC	2 cut(s)	215, 309
Eco47I	GGWCC	1 cut(s)	833
Eco53kI	GAGCTC	1 cut(s)	230
Eco57I	CTGAAG	1 cut(s)	716
EcoICRI	GAGCTC	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	821
EcoRII	CCWGG	4 cut(s)	136, 310, 565, 624
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	3 cut(s)	387, 553, 873
FaiI	YATR	9 cut(s)	101, 385, 468, 551, 822, 842, 871, 883, 885
FalI	AAGNNNNNCTT	2 cut(s)	596, 628
FaqI	GGGAC	2 cut(s)	64, 449
FatI	CATG	3 cut(s)	383, 549, 869
FauI	CCCGC	1 cut(s)	346
FauNDI	CATATG	1 cut(s)	883
FbaI	TGATCA	1 cut(s)	399
FblI	GTMKAC	2 cut(s)	591, 702
Fnu4HI	GCNGC	8 cut(s)	45, 66, 192, 249, 413, 576, 684, 867
FokI	GGATG	2 cut(s)	31, 494
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	8 cut(s)	45, 66, 192, 249, 413, 576, 684, 867
FspBI	CTAG	1 cut(s)	846
GlaI	GCGC	2 cut(s)	69, 457
GluI	GCNGC	8 cut(s)	45, 66, 192, 249, 413, 576, 684, 867
GsaI	CCCAGC	1 cut(s)	51
GsuI	CTGGAG	2 cut(s)	381, 687
HaeIII	GGCC	4 cut(s)	84, 475, 488, 816
HapII	CCGG	2 cut(s)	636, 857
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	2 cut(s)	70, 458
Hin1II	CATG	3 cut(s)	387, 553, 873
Hin6I	GCGC	2 cut(s)	68, 456
HinP1I	GCGC	2 cut(s)	68, 456
HinfI	GANTC	2 cut(s)	790, 807
HpaII	CCGG	2 cut(s)	636, 857
Hpy166II	GTNNAC	3 cut(s)	592, 703, 728
Hpy188I	TCNGA	4 cut(s)	150, 508, 657, 802
Hpy188III	TCNNGA	1 cut(s)	721
Hpy8I	GTNNAC	3 cut(s)	592, 703, 728
HpyAV	CCTTC	4 cut(s)	8, 262, 503, 697
HpyCH4III	ACNGT	4 cut(s)	55, 244, 274, 328
HpyCH4V	TGCA	5 cut(s)	115, 408, 415, 428, 578
HpyF3I	CTNAG	7 cut(s)	40, 157, 195, 393, 445, 500, 799
Hsp92II	CATG	3 cut(s)	387, 553, 873
HspAI	GCGC	2 cut(s)	68, 456
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	2 cut(s)	399, 650
LmnI	GCTCC	4 cut(s)	138, 227, 235, 680
Lsp1109I	GCAGC	8 cut(s)	56, 77, 178, 235, 399, 562, 695, 878
LweI	GCATC	2 cut(s)	160, 766
MabI	ACCWGGT	1 cut(s)	310
MaeI	CTAG	1 cut(s)	846
MaeIII	GTNAC	1 cut(s)	889
MalI	GATC	2 cut(s)	401, 652
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	2 cut(s)	399, 650
MboII	GAAGA	3 cut(s)	20, 259, 657
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	2 cut(s)	232, 319
MlsI	TGGCCA	2 cut(s)	84, 488
MluNI	TGGCCA	2 cut(s)	84, 488
MlyI	GAGTC	1 cut(s)	816
MmeI	TCCRAC	2 cut(s)	37, 459
Mox20I	TGGCCA	2 cut(s)	84, 488
MscI	TGGCCA	2 cut(s)	84, 488
MseI	TTAA	3 cut(s)	33, 108, 783
Msp20I	TGGCCA	2 cut(s)	84, 488
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	2 cut(s)	636, 857
MspR9I	CCNGG	5 cut(s)	138, 312, 567, 626, 637
MvaI	CCWGG	4 cut(s)	138, 312, 567, 626
NciI	CCSGG	1 cut(s)	637
NcoI	CCATGG	1 cut(s)	549
NdeI	CATATG	1 cut(s)	883
NdeII	GATC	2 cut(s)	399, 650
NlaIII	CATG	3 cut(s)	387, 553, 873
NlaIV	GGNNCC	2 cut(s)	316, 543
NmuCI	GTSAC	1 cut(s)	889
NspI	RCATGY	2 cut(s)	387, 873
PaeI	GCATGC	2 cut(s)	387, 873
PceI	AGGCCT	1 cut(s)	816
PfeI	GAWTC	1 cut(s)	790
PkrI	GCNGC	8 cut(s)	46, 67, 193, 250, 414, 577, 685, 868
PleI	GAGTC	1 cut(s)	815
PpsI	GAGTC	1 cut(s)	815
Psp124BI	GAGCTC	1 cut(s)	232
Psp6I	CCWGG	4 cut(s)	136, 310, 565, 624
PspFI	CCCAGC	1 cut(s)	47
PspGI	CCWGG	4 cut(s)	136, 310, 565, 624
PspN4I	GGNNCC	2 cut(s)	316, 543
PspPI	GGNCC	2 cut(s)	473, 833
PsuI	RGATCY	1 cut(s)	650
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	2 cut(s)	498, 729
RsaNI	GTAC	2 cut(s)	497, 728
SacI	GAGCTC	1 cut(s)	232
SaqAI	TTAA	3 cut(s)	33, 108, 783
SatI	GCNGC	8 cut(s)	45, 66, 192, 249, 413, 576, 684, 867
Sau3AI	GATC	2 cut(s)	399, 650
Sau96I	GGNCC	2 cut(s)	473, 833
SchI	GAGTC	1 cut(s)	816
ScrFI	CCNGG	5 cut(s)	138, 312, 567, 626, 637
SduI	GDGCHC	2 cut(s)	232, 319
SexAI	ACCWGGT	1 cut(s)	310
SfaNI	GCATC	2 cut(s)	160, 766
SinI	GGWCC	1 cut(s)	833
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
SphI	GCATGC	2 cut(s)	387, 873
SseBI	AGGCCT	1 cut(s)	816
SsiI	CCGC	2 cut(s)	131, 353
SspMI	CTAG	1 cut(s)	846
SstI	GAGCTC	1 cut(s)	232
StuI	AGGCCT	1 cut(s)	816
StyD4I	CCNGG	5 cut(s)	136, 310, 565, 624, 635
StyI	CCWWGG	1 cut(s)	549
TaaI	ACNGT	4 cut(s)	55, 244, 274, 328
TatI	WGTACW	1 cut(s)	727
TfiI	GAWTC	1 cut(s)	790
Tru1I	TTAA	3 cut(s)	33, 108, 783
Tru9I	TTAA	3 cut(s)	33, 108, 783
TscAI	CASTG	4 cut(s)	247, 397, 453, 465
TseFI	GTSAC	1 cut(s)	889
TseI	GCWGC	8 cut(s)	44, 65, 191, 248, 412, 575, 683, 866
Tsp45I	GTSAC	1 cut(s)	889
TspDTI	ATGAA	1 cut(s)	27
TspGWI	ACGGA	1 cut(s)	688
TspRI	CASTG	4 cut(s)	247, 397, 453, 465
VpaK11BI	GGWCC	1 cut(s)	833
XagI	CCTNNNNNAGG	1 cut(s)	821
XceI	RCATGY	2 cut(s)	387, 873
XmiI	GTMKAC	2 cut(s)	591, 702
XspI	CTAG	1 cut(s)	846

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.