Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0009187

Physical Location & Seq

Genomic Coordinates Forward (+)

42735824 .. 42742515

Gene Structure 6692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00249170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCGGATGTAGCCAAAGATCTAGCCTCTGGGACTGTTGGTGGGGTAGCACAGTTAGTAGTTGGGCATCCATTTGATACCATCAAGGTTAAACTCCAAAGCCAGCCTGCTCCAGTCCCTGGACAACCTCCTAAGTTCTCAGGTGCTATGGATGCTGTCAGGCAGACATTAGCTGCTGAAGGCCCAAGGGGTCTCTACAAAGGCATGGGAGCTCCACTTGCCACTGTTGCAGTCTTCAATGCTGTCCTCTTCACAGTTAGAGGGCAAATGGAGGCTCTTTTGAGATCTGAACCTGGTGTGCACCTTACAGTTGGGCAACAGATTGTTGCTGGGGCTGGGGCTGGAGTAGCCGTGTCCTTCCTAGCATGCCCCACTGAGTTGATCAAGTGCAGATTGCAAGCGCAGAGTGCAATGGGGGATACTGGTGCTGTTGCTGTTGCAGTGAAGTATGGAGGGCCAATGGATGTGGCAAAGCAAGTACTTAGATCAGAAGGGGGTGCAAGGGGTCTCTTCAAGGGCTTGGTTCCCACAATGGCACGTGAAATACCTGGAAATGCTGCAATGTTTGGGGTCTATGAAGCAATCAAGCAGTTTCTTGCTGGAGGTCAGGATACTTCTGGGCTGGGAAGAGGCTCTTTAATGGCGGCTGGAGGTTTGGCTGGAGCAGCCTTCTGGGGCGCTGTGTACCCTACTGATGTTGTCAAGAGTGTAATTCAGGTAGATGATTACAAAAATCCCAAATTTTCTGGTTCAATTGATGCATTTAGAAAGATCCTGGCCTCAGAAGGAGCTGCAGGCCTCTATAAGGGATTTGGACCAGCTATGTCAAGAAGTGTTCCAGCTAATGCAGCATGTTTCTTGGCGTATGAGATCACAAGGTCAAGTTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009507 GO:0009536 GO:0015075 GO:0015171 GO:0015179 GO:0015238 GO:0015318 GO:0015711 GO:0015807 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903352 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

297

Amino Acids

30.29

Weight (kDa)

9.34

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	4 - 95	8.8e-19	Mitochondrial carrier protein
Mito_carr	PF00153	102 - 200	1.5e-22	Mitochondrial carrier protein
Mito_carr	PF00153	213 - 295	1.3e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46800 AT5G46800 AT5G46800
fragaria_vesca	FvH4_7g06810 FvH4_7g06810 FvH4_7g06810
malus_domestica	MD06G1033900.v1.1 MD16G1274700.v1.1
prunus_persica	Prupe.8G063200_v2.0.a1 Prupe.8G063200_v2.0.a1
pyrus_communis	pycom06g02800 pycom16g24480
rosa_chinensis	RchiOBHm_Chr7g0209661
rosa_laevigata	RLG00000003106
rosa_multiflora	Rmu_sc0021920.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249170
rosa_rugosa	Rorug07G0115100
rosa_samantha	Rh7AG248800 Rh7BG242800 Rh7CG264700 Rh7DG254700
rosa_wichuraiana	Rw7G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	119
AciI	CCGC	2 cut(s)	5, 644
AclWI	GGATC	1 cut(s)	766
AcsI	RAATTY	1 cut(s)	740
AcuI	CTGAAG	1 cut(s)	198
AcvI	CACGTG	1 cut(s)	539
AfaI	GTAC	2 cut(s)	480, 686
AfiI	CCNNNNNNNGG	2 cut(s)	119, 805
AgsI	TTSAA	3 cut(s)	238, 514, 753
AjnI	CCWGG	4 cut(s)	118, 292, 547, 774
AluBI	AGCT	5 cut(s)	173, 212, 791, 821, 842
AluI	AGCT	5 cut(s)	173, 212, 791, 821, 842
Alw21I	GWGCWC	2 cut(s)	214, 303
Alw26I	GTCTC	2 cut(s)	197, 512
Alw44I	GTGCAC	1 cut(s)	299
AlwI	GGATC	1 cut(s)	766
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	4 cut(s)	181, 455, 777, 796
ApaLI	GTGCAC	1 cut(s)	299
ApeKI	GCWGC	5 cut(s)	173, 557, 665, 791, 848
ApoI	RAATTY	1 cut(s)	740
AspLEI	GCGC	2 cut(s)	403, 680
AspS9I	GGNCC	3 cut(s)	182, 455, 815
AvaII	GGWCC	1 cut(s)	815
BaeGI	GKGCMC	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	214
BbrPI	CACGTG	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	226
Bbv12I	GWGCWC	2 cut(s)	214, 303
BbvI	GCAGC	5 cut(s)	160, 544, 677, 778, 860
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	335
BciT130I	CCWGG	4 cut(s)	120, 294, 549, 776
BciVI	GTATCC	2 cut(s)	412, 604
BclI	TGATCA	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	197, 512
BfaI	CTAG	2 cut(s)	23, 362
BfmI	CTRYAG	1 cut(s)	792
BfoI	RGCGCY	1 cut(s)	681
BfuI	GTATCC	2 cut(s)	412, 604
BglII	AGATCT	2 cut(s)	19, 284
BisI	GCNGC	6 cut(s)	174, 558, 645, 666, 792, 849
BlsI	GCNGC	6 cut(s)	175, 559, 646, 667, 793, 850
BmcAI	AGTACT	1 cut(s)	480
Bme1390I	CCNGG	4 cut(s)	120, 294, 549, 776
Bme18I	GGWCC	1 cut(s)	815
BmgT120I	GGNCC	3 cut(s)	182, 455, 815
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	4 cut(s)	120, 294, 549, 776
BmsI	GCATC	3 cut(s)	76, 142, 748
BpiI	GAAGAC	1 cut(s)	226
BpmI	CTGGAG	5 cut(s)	96, 363, 621, 669, 681
BsaAI	YACGTR	1 cut(s)	539
BsaI	GGTCTC	2 cut(s)	197, 512
BsaJI	CCNNGG	2 cut(s)	118, 185
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 805
Bse1I	ACTGG	2 cut(s)	113, 427
Bse3DI	GCAATG	2 cut(s)	417, 567
BseBI	CCWGG	4 cut(s)	120, 294, 549, 776
BseDI	CCNNGG	2 cut(s)	118, 185
BseGI	GGATG	4 cut(s)	13, 67, 157, 469
BseLI	CCNNNNNNNGG	2 cut(s)	119, 805
BseMI	GCAATG	2 cut(s)	417, 567
BseMII	CTCAG	3 cut(s)	153, 366, 795
BseNI	ACTGG	2 cut(s)	113, 427
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	5 cut(s)	160, 544, 677, 778, 860
BseYI	CCCAGC	3 cut(s)	329, 335, 622
BsgI	GTGCAG	1 cut(s)	409
BshFI	GGCC	4 cut(s)	183, 457, 779, 798
BsiHKAI	GWGCWC	2 cut(s)	214, 303
BslFI	GGGAC	2 cut(s)	46, 101
BslI	CCNNNNNNNGG	2 cut(s)	119, 805
BsmAI	GTCTC	2 cut(s)	197, 512
BsmFI	GGGAC	2 cut(s)	46, 101
BsnI	GGCC	4 cut(s)	183, 457, 779, 798
Bso31I	GGTCTC	2 cut(s)	197, 512
Bsp1286I	GDGCHC	2 cut(s)	214, 303
Bsp143I	GATC	6 cut(s)	19, 284, 381, 485, 771, 870
BspACI	CCGC	2 cut(s)	5, 644
BspANI	GGCC	4 cut(s)	183, 457, 779, 798
BspCNI	CTCAG	3 cut(s)	152, 367, 794
BspLI	GGNNCC	1 cut(s)	525
BspMAI	CTGCAG	1 cut(s)	796
BspPI	GGATC	1 cut(s)	766
BspTNI	GGTCTC	2 cut(s)	197, 512
BsrDI	GCAATG	2 cut(s)	417, 567
BsrI	ACTGG	2 cut(s)	113, 427
BssECI	CCNNGG	2 cut(s)	118, 185
BssMI	GATC	6 cut(s)	19, 284, 381, 485, 771, 870
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	4 cut(s)	120, 294, 549, 776
Bst4CI	ACNGT	5 cut(s)	37, 54, 226, 256, 310
Bst6I	CTCTTC	3 cut(s)	254, 515, 622
BstBAI	YACGTR	1 cut(s)	539
BstC8I	GCNNGC	5 cut(s)	104, 108, 367, 399, 796
BstDEI	CTNAG	5 cut(s)	132, 139, 375, 482, 781
BstENI	CCTNNNNNAGG	1 cut(s)	803
BstF5I	GGATG	4 cut(s)	13, 67, 157, 469
BstH2I	RGCGCY	1 cut(s)	681
BstHHI	GCGC	2 cut(s)	403, 680
BstKTI	GATC	6 cut(s)	22, 287, 384, 488, 774, 873
BstMAI	GTCTC	2 cut(s)	197, 512
BstMBI	GATC	6 cut(s)	19, 284, 381, 485, 771, 870
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 152, 218, 227, 347, 407, 665, 848
BstNI	CCWGG	4 cut(s)	120, 294, 549, 776
BstNSI	RCATGY	2 cut(s)	369, 855
BstSCI	CCNGG	4 cut(s)	118, 292, 547, 774
BstSFI	CTRYAG	1 cut(s)	792
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	5 cut(s)	160, 544, 677, 778, 860
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	3 cut(s)	19, 284, 771
BstYI	RGATCY	3 cut(s)	19, 284, 771
BsuI	GTATCC	2 cut(s)	412, 604
BsuRI	GGCC	4 cut(s)	183, 457, 779, 798
BtsCI	GGATG	4 cut(s)	13, 67, 157, 469
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	3 cut(s)	222, 372, 447
Cac8I	GCNNGC	5 cut(s)	104, 108, 367, 399, 796
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	2 cut(s)	403, 680
Cfr13I	GGNCC	3 cut(s)	182, 455, 815
CsiI	ACCWGGT	1 cut(s)	292
Csp6I	GTAC	2 cut(s)	479, 685
CspCI	CAANNNNNGTGG	2 cut(s)	447, 482
CviAII	CATG	3 cut(s)	205, 366, 852
CviQI	GTAC	2 cut(s)	479, 685
DdeI	CTNAG	5 cut(s)	132, 139, 375, 482, 781
DpnI	GATC	6 cut(s)	21, 286, 383, 487, 773, 872
DpnII	GATC	6 cut(s)	19, 284, 381, 485, 771, 870
Eam1104I	CTCTTC	3 cut(s)	254, 515, 622
EarI	CTCTTC	3 cut(s)	254, 515, 622
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	185
Eco147I	AGGCCT	1 cut(s)	798
Eco24I	GRGCYC	1 cut(s)	214
Eco31I	GGTCTC	2 cut(s)	197, 512
Eco47I	GGWCC	1 cut(s)	815
Eco53kI	GAGCTC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	198
Eco72I	CACGTG	1 cut(s)	539
EcoICRI	GAGCTC	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	803
EcoRII	CCWGG	4 cut(s)	118, 292, 547, 774
EcoT14I	CCWWGG	1 cut(s)	185
EcoT22I	ATGCAT	1 cut(s)	763
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	185
FaeI	CATG	3 cut(s)	208, 369, 855
FaiI	YATR	9 cut(s)	149, 206, 367, 450, 576, 804, 824, 853, 867
FalI	AAGNNNNNCTT	2 cut(s)	619, 651
FaqI	GGGAC	2 cut(s)	46, 101
FatI	CATG	3 cut(s)	204, 365, 851
FbaI	TGATCA	1 cut(s)	381
Fnu4HI	GCNGC	6 cut(s)	174, 558, 645, 666, 792, 849
FokI	GGATG	4 cut(s)	20, 54, 164, 476
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	6 cut(s)	174, 558, 645, 666, 792, 849
FspBI	CTAG	2 cut(s)	23, 362
GlaI	GCGC	2 cut(s)	402, 679
GluI	GCNGC	6 cut(s)	174, 558, 645, 666, 792, 849
GsaI	CCCAGC	3 cut(s)	333, 339, 626
GsuI	CTGGAG	5 cut(s)	96, 363, 621, 669, 681
HaeII	RGCGCY	1 cut(s)	681
HaeIII	GGCC	4 cut(s)	183, 457, 779, 798
HhaI	GCGC	2 cut(s)	403, 680
Hin1II	CATG	3 cut(s)	208, 369, 855
Hin6I	GCGC	2 cut(s)	401, 678
HinP1I	GCGC	2 cut(s)	401, 678
Hpy166II	GTNNAC	2 cut(s)	301, 685
Hpy188I	TCNGA	3 cut(s)	289, 490, 784
Hpy188III	TCNNGA	3 cut(s)	608, 703, 828
Hpy8I	GTNNAC	2 cut(s)	301, 685
HpyAV	CCTTC	5 cut(s)	173, 367, 485, 679, 779
HpyCH4III	ACNGT	5 cut(s)	37, 54, 226, 256, 310
HpyCH4IV	ACGT	1 cut(s)	538
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 152, 218, 227, 347, 407, 665, 848
HpyF3I	CTNAG	5 cut(s)	132, 139, 375, 482, 781
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	3 cut(s)	208, 369, 855
HspAI	GCGC	2 cut(s)	401, 678
Ksp22I	TGATCA	1 cut(s)	381
Kzo9I	GATC	6 cut(s)	19, 284, 381, 485, 771, 870
LmnI	GCTCC	5 cut(s)	115, 209, 217, 662, 788
Lsp1109I	GCAGC	5 cut(s)	160, 544, 677, 778, 860
LweI	GCATC	3 cut(s)	76, 142, 748
MabI	ACCWGGT	1 cut(s)	292
MaeI	CTAG	2 cut(s)	23, 362
MaeII	ACGT	1 cut(s)	538
MalI	GATC	6 cut(s)	21, 286, 383, 487, 773, 872
MboI	GATC	6 cut(s)	19, 284, 381, 485, 771, 870
MboII	GAAGA	4 cut(s)	226, 241, 502, 639
MfeI	CAATTG	1 cut(s)	753
MflI	RGATCY	3 cut(s)	19, 284, 771
MhlI	GDGCHC	2 cut(s)	214, 303
MluCI	AATT	3 cut(s)	711, 740, 753
Mph1103I	ATGCAT	1 cut(s)	763
MseI	TTAA	2 cut(s)	90, 638
MspR9I	CCNGG	4 cut(s)	120, 294, 549, 776
MunI	CAATTG	1 cut(s)	753
MvaI	CCWGG	4 cut(s)	120, 294, 549, 776
MwoI	GCNNNNNNNGC	8 cut(s)	11, 152, 218, 227, 347, 407, 665, 848
NdeII	GATC	6 cut(s)	19, 284, 381, 485, 771, 870
NlaIII	CATG	3 cut(s)	208, 369, 855
NlaIV	GGNNCC	1 cut(s)	525
NsiI	ATGCAT	1 cut(s)	763
NspI	RCATGY	2 cut(s)	369, 855
PaeI	GCATGC	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	798
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	6 cut(s)	175, 559, 646, 667, 793, 850
PmaCI	CACGTG	1 cut(s)	539
PmlI	CACGTG	1 cut(s)	539
Ppu21I	YACGTR	1 cut(s)	539
Psp124BI	GAGCTC	1 cut(s)	214
Psp6I	CCWGG	4 cut(s)	118, 292, 547, 774
PspCI	CACGTG	1 cut(s)	539
PspFI	CCCAGC	3 cut(s)	329, 335, 622
PspGI	CCWGG	4 cut(s)	118, 292, 547, 774
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	3 cut(s)	182, 455, 815
PstI	CTGCAG	1 cut(s)	796
PstNI	CAGNNNCTG	1 cut(s)	119
PsuI	RGATCY	3 cut(s)	19, 284, 771
RsaI	GTAC	2 cut(s)	480, 686
RsaNI	GTAC	2 cut(s)	479, 685
SacI	GAGCTC	1 cut(s)	214
SaqAI	TTAA	2 cut(s)	90, 638
SatI	GCNGC	6 cut(s)	174, 558, 645, 666, 792, 849
Sau3AI	GATC	6 cut(s)	19, 284, 381, 485, 771, 870
Sau96I	GGNCC	3 cut(s)	182, 455, 815
ScaI	AGTACT	1 cut(s)	480
ScrFI	CCNGG	4 cut(s)	120, 294, 549, 776
SduI	GDGCHC	2 cut(s)	214, 303
SexAI	ACCWGGT	1 cut(s)	292
SfaNI	GCATC	3 cut(s)	76, 142, 748
SfcI	CTRYAG	1 cut(s)	792
SinI	GGWCC	1 cut(s)	815
SphI	GCATGC	1 cut(s)	369
Sse9I	AATT	3 cut(s)	711, 740, 753
SseBI	AGGCCT	1 cut(s)	798
SsiI	CCGC	2 cut(s)	5, 644
SspMI	CTAG	2 cut(s)	23, 362
SstI	GAGCTC	1 cut(s)	214
StuI	AGGCCT	1 cut(s)	798
StyD4I	CCNGG	4 cut(s)	118, 292, 547, 774
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	5 cut(s)	37, 54, 226, 256, 310
TaiI	ACGT	1 cut(s)	541
TasI	AATT	3 cut(s)	711, 740, 753
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	1 cut(s)	647
Tru1I	TTAA	2 cut(s)	90, 638
Tru9I	TTAA	2 cut(s)	90, 638
TscAI	CASTG	3 cut(s)	229, 379, 447
TseI	GCWGC	5 cut(s)	173, 557, 665, 791, 848
TspDTI	ATGAA	1 cut(s)	591
TspRI	CASTG	3 cut(s)	229, 379, 447
Van91I	CCANNNNNTGG	1 cut(s)	119
VneI	GTGCAC	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	815
XagI	CCTNNNNNAGG	1 cut(s)	803
XapI	RAATTY	1 cut(s)	740
XceI	RCATGY	2 cut(s)	369, 855
XspI	CTAG	2 cut(s)	23, 362
ZrmI	AGTACT	1 cut(s)	480
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.