Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009187

Physical Location & Seq

Genomic Coordinates Forward (+)

25955301 .. 25956544

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g24480.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGCCGAAAATTCACTATTTTGGTTTTCTAATTCTGAATATGCAGATGGGGGAAGTAGTTAAGGACTTAGCTGCTGGGACTATGGGAGGCGTAGCACAGTTAGTAGTTGGCCACCCATTTGATACCATAAAGGTTAAACTCCAAAGCCAGCCTACTCCACTTCCAGGACAACCTCCCAAGTTCTCAGGTGCTATTGATGCTGTCAAGCAGACGTTATCAGCTGAGGGAGCTGCGGGTCTCTACAAAGGAATGGGAGCTCCACTTGCCACTGTTGCAGCCTTCAATGCTGTCCTCTTCACCGTAAGAGGGCAAATGGAGACATTGTTAAGGTCTCAACCTGGTGCCCCGCTTACAGTTAGTCAGCAGGTCATTTGTGGGGGAGGGGCTGGAGTAGCAGTGTCCTTTCTGGCATGCCCTACTGAGTTGATCAAGTGCAGGTTGCAAGCCCAGAGTGCATTGGGGGATGCTGGCTCAGTGGGTGGTGCAGTGAAGTATGGAGGGCCTTTGGATGTGGCCAAGCGGGTACTTAGGTCGGAAGGTGGTGTGAGGGGTCTGTTCAAGGGGTTGGTTCCTACTATGGCACGCGAAATACCTGGAAATGCTGCAATGTTTGGTGTTTATGAAGCCCTCAAGCAGTTCTTTGCTGGAAGCCAGGACACTTCCGGCTTGGGAAGAGGATCTTTGATAGTGGCTGGAGGATTGGGGGGAGCCGCGTTCTGGGGCTTCGTCTACCCAACTGATGTTGTCAAGAGTGTAATCCAGGTAGATGATTTCAAAAATCCCAAGTATTCGGGGTCAGTTGATGCCTTTAAAAAGATTCTTGCCTCCGAGGGAGTCAAAGGCCTCTATAAGGGCTTTGGACCAGCTATGGGTAGAAGTATTCCGGCTAATGCAGCATGCTTCTTGGCCTATGAGGTCACAAGGTCAAGTTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009507 GO:0009536 GO:0015075 GO:0015171 GO:0015179 GO:0015238 GO:0015318 GO:0015711 GO:0015807 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903352 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

313

Amino Acids

32.15

Weight (kDa)

9.46

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46800 AT5G46800 AT5G46800
fragaria_vesca	FvH4_7g06810 FvH4_7g06810 FvH4_7g06810
malus_domestica	MD06G1033900.v1.1 MD16G1274700.v1.1
prunus_persica	Prupe.8G063200_v2.0.a1 Prupe.8G063200_v2.0.a1
pyrus_communis	pycom06g02800 pycom16g24480
rosa_chinensis	RchiOBHm_Chr7g0209661
rosa_laevigata	RLG00000003106
rosa_multiflora	Rmu_sc0021920.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249170
rosa_rugosa	Rorug07G0115100
rosa_samantha	Rh7AG248800 Rh7BG242800 Rh7CG264700 Rh7DG254700
rosa_wichuraiana	Rw7G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	355, 426
AccB1I	GGYRCC	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	729
AccII	CGCG	2 cut(s)	585, 713
AciI	CCGC	4 cut(s)	233, 347, 520, 711
AclWI	GGATC	1 cut(s)	685
AcoI	YGGCCR	2 cut(s)	109, 513
AcsI	RAATTY	1 cut(s)	9
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	5 cut(s)	164, 306, 717, 850, 869
AgsI	TTSAA	3 cut(s)	283, 559, 775
AjnI	CCWGG	5 cut(s)	163, 337, 592, 651, 759
AluBI	AGCT	5 cut(s)	71, 221, 230, 257, 866
AluI	AGCT	5 cut(s)	71, 221, 230, 257, 866
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	3 cut(s)	242, 311, 336
AlwI	GGATC	1 cut(s)	685
AoxI	GGCC	5 cut(s)	109, 500, 513, 841, 906
ApeKI	GCWGC	5 cut(s)	71, 230, 275, 602, 893
ApoI	RAATTY	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	500, 860
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	860
BaeGI	GKGCMC	1 cut(s)	346
BaeI	ACNNNNGTAYC	2 cut(s)	515, 548
BalI	TGGCCA	2 cut(s)	111, 515
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	259
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	5 cut(s)	58, 217, 287, 589, 905
BccI	CCATC	1 cut(s)	40
BciT130I	CCWGG	5 cut(s)	165, 339, 594, 653, 761
BclI	TGATCA	1 cut(s)	426
BcoDI	GTCTC	3 cut(s)	242, 311, 336
BfuAI	ACCTGC	2 cut(s)	355, 426
BisI	GCNGC	6 cut(s)	72, 231, 276, 603, 711, 894
BlsI	GCNGC	6 cut(s)	73, 232, 277, 604, 712, 895
Bme1390I	CCNGG	5 cut(s)	165, 339, 594, 653, 761
Bme18I	GGWCC	1 cut(s)	860
BmgT120I	GGNCC	2 cut(s)	500, 860
BmiI	GGNNCC	3 cut(s)	343, 570, 709
BmrFI	CCNGG	5 cut(s)	165, 339, 594, 653, 761
BmsI	GCATC	3 cut(s)	187, 454, 793
BpmI	CTGGAG	2 cut(s)	408, 714
Bpu10I	CCTNAGC	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	614
BsaI	GGTCTC	2 cut(s)	242, 336
BsaJI	CCNNGG	1 cut(s)	828
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 338, 381, 411
Bsc4I	CCNNNNNNNGG	5 cut(s)	164, 306, 717, 850, 869
Bse3DI	GCAATG	1 cut(s)	612
BseBI	CCWGG	5 cut(s)	165, 339, 594, 653, 761
BseDI	CCNNGG	1 cut(s)	828
BseGI	GGATG	2 cut(s)	469, 514
BseLI	CCNNNNNNNGG	5 cut(s)	164, 306, 717, 850, 869
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	4 cut(s)	198, 213, 411, 486
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	5 cut(s)	58, 217, 287, 589, 905
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	2 cut(s)	454, 504
Bsh1236I	CGCG	2 cut(s)	585, 713
BshFI	GGCC	5 cut(s)	111, 502, 515, 843, 908
BshNI	GGYRCC	1 cut(s)	341
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	2 cut(s)	663, 884
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	5 cut(s)	164, 306, 717, 850, 869
BsmAI	GTCTC	3 cut(s)	242, 311, 336
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	5 cut(s)	111, 502, 515, 843, 908
Bso31I	GGTCTC	2 cut(s)	242, 336
Bsp1286I	GDGCHC	2 cut(s)	259, 346
Bsp143I	GATC	2 cut(s)	426, 677
BspACI	CCGC	4 cut(s)	233, 347, 520, 711
BspANI	GGCC	5 cut(s)	111, 502, 515, 843, 908
BspCNI	CTCAG	4 cut(s)	197, 214, 412, 485
BspFNI	CGCG	2 cut(s)	585, 713
BspLI	GGNNCC	3 cut(s)	343, 570, 709
BspMI	ACCTGC	2 cut(s)	355, 426
BspPI	GGATC	1 cut(s)	685
BspT107I	GGYRCC	1 cut(s)	341
BspTNI	GGTCTC	2 cut(s)	242, 336
BsrDI	GCAATG	1 cut(s)	612
BssECI	CCNNGG	1 cut(s)	828
BssMI	GATC	2 cut(s)	426, 677
Bst2UI	CCWGG	5 cut(s)	165, 339, 594, 653, 761
Bst4CI	ACNGT	4 cut(s)	99, 271, 301, 355
Bst6I	CTCTTC	2 cut(s)	299, 667
BstC8I	GCNNGC	6 cut(s)	149, 412, 444, 469, 583, 898
BstDEI	CTNAG	6 cut(s)	67, 184, 222, 420, 472, 527
BstENI	CCTNNNNNAGG	1 cut(s)	848
BstF5I	GGATG	2 cut(s)	469, 514
BstFNI	CGCG	2 cut(s)	585, 713
BstKTI	GATC	2 cut(s)	429, 680
BstMAI	GTCTC	3 cut(s)	242, 311, 336
BstMBI	GATC	2 cut(s)	426, 677
BstMWI	GCNNNNNNNGC	8 cut(s)	197, 227, 263, 272, 284, 392, 452, 893
BstNI	CCWGG	5 cut(s)	165, 339, 594, 653, 761
BstNSI	RCATGY	2 cut(s)	414, 900
BstSCI	CCNGG	5 cut(s)	163, 337, 592, 651, 759
BstSLI	GKGCMC	1 cut(s)	346
BstUI	CGCG	2 cut(s)	585, 713
BstV1I	GCAGC	5 cut(s)	58, 217, 287, 589, 905
BstX2I	RGATCY	1 cut(s)	677
BstYI	RGATCY	1 cut(s)	677
BsuRI	GGCC	5 cut(s)	111, 502, 515, 843, 908
BtsCI	GGATG	2 cut(s)	469, 514
BtsI	GCAGTG	2 cut(s)	402, 492
BtsIMutI	CAGTG	4 cut(s)	267, 402, 480, 492
BveI	ACCTGC	2 cut(s)	355, 426
Cac8I	GCNNGC	6 cut(s)	149, 412, 444, 469, 583, 898
Cfr13I	GGNCC	2 cut(s)	500, 860
CsiI	ACCWGGT	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	2 cut(s)	411, 897
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	6 cut(s)	67, 184, 222, 420, 472, 527
DpnI	GATC	2 cut(s)	428, 679
DpnII	GATC	2 cut(s)	426, 677
DraI	TTTAAA	1 cut(s)	811
EaeI	YGGCCR	2 cut(s)	109, 513
Eam1104I	CTCTTC	2 cut(s)	299, 667
EarI	CTCTTC	2 cut(s)	299, 667
Ecl136II	GAGCTC	1 cut(s)	257
Eco147I	AGGCCT	1 cut(s)	843
Eco24I	GRGCYC	1 cut(s)	259
Eco31I	GGTCTC	2 cut(s)	242, 336
Eco47I	GGWCC	1 cut(s)	860
Eco53kI	GAGCTC	1 cut(s)	257
EcoICRI	GAGCTC	1 cut(s)	257
EcoNI	CCTNNNNNAGG	1 cut(s)	848
EcoO109I	RGGNCCY	1 cut(s)	500
EcoRII	CCWGG	5 cut(s)	163, 337, 592, 651, 759
EcoT38I	GRGCYC	1 cut(s)	259
FaeI	CATG	2 cut(s)	414, 900
FalI	AAGNNNNNCTT	4 cut(s)	623, 655, 664, 696
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	2 cut(s)	410, 896
FauI	CCCGC	3 cut(s)	226, 354, 513
FbaI	TGATCA	1 cut(s)	426
FblI	GTMKAC	1 cut(s)	729
Fnu4HI	GCNGC	6 cut(s)	72, 231, 276, 603, 711, 894
FokI	GGATG	2 cut(s)	476, 521
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	6 cut(s)	72, 231, 276, 603, 711, 894
GluI	GCNGC	6 cut(s)	72, 231, 276, 603, 711, 894
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	2 cut(s)	408, 714
HaeIII	GGCC	5 cut(s)	111, 502, 515, 843, 908
HapII	CCGG	2 cut(s)	663, 884
Hin1II	CATG	2 cut(s)	414, 900
HinfI	GANTC	2 cut(s)	817, 834
HpaII	CCGG	2 cut(s)	663, 884
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	730
Hpy188I	TCNGA	3 cut(s)	36, 535, 829
Hpy188III	TCNNGA	1 cut(s)	748
Hpy8I	GTNNAC	1 cut(s)	730
HpyAV	CCTTC	2 cut(s)	289, 530
HpyCH4III	ACNGT	4 cut(s)	99, 271, 301, 355
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	8 cut(s)	43, 275, 435, 442, 455, 485, 605, 893
HpyF10VI	GCNNNNNNNGC	8 cut(s)	197, 227, 263, 272, 284, 392, 452, 893
HpyF3I	CTNAG	6 cut(s)	67, 184, 222, 420, 472, 527
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	414, 900
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	426, 677
LmnI	GCTCC	4 cut(s)	227, 254, 262, 707
Lsp1109I	GCAGC	5 cut(s)	58, 217, 287, 589, 905
LweI	GCATC	3 cut(s)	187, 454, 793
MabI	ACCWGGT	1 cut(s)	337
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	916
MalI	GATC	2 cut(s)	428, 679
MboI	GATC	2 cut(s)	426, 677
MboII	GAAGA	2 cut(s)	286, 684
MflI	RGATCY	1 cut(s)	677
MhlI	GDGCHC	2 cut(s)	259, 346
MlsI	TGGCCA	2 cut(s)	111, 515
MluCI	AATT	2 cut(s)	9, 30
MluNI	TGGCCA	2 cut(s)	111, 515
MlyI	GAGTC	1 cut(s)	843
MmeI	TCCRAC	1 cut(s)	513
Mox20I	TGGCCA	2 cut(s)	111, 515
MscI	TGGCCA	2 cut(s)	111, 515
MseI	TTAA	4 cut(s)	60, 135, 326, 810
Msp20I	TGGCCA	2 cut(s)	111, 515
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	2 cut(s)	663, 884
MspR9I	CCNGG	5 cut(s)	165, 339, 594, 653, 761
MvaI	CCWGG	5 cut(s)	165, 339, 594, 653, 761
MvnI	CGCG	2 cut(s)	585, 713
MwoI	GCNNNNNNNGC	8 cut(s)	197, 227, 263, 272, 284, 392, 452, 893
NdeII	GATC	2 cut(s)	426, 677
NlaIII	CATG	2 cut(s)	414, 900
NlaIV	GGNNCC	3 cut(s)	343, 570, 709
NmuCI	GTSAC	1 cut(s)	916
NspI	RCATGY	2 cut(s)	414, 900
PaeI	GCATGC	2 cut(s)	414, 900
PceI	AGGCCT	1 cut(s)	843
PfeI	GAWTC	1 cut(s)	817
PfoI	TCCNGGA	1 cut(s)	163
PkrI	GCNGC	6 cut(s)	73, 232, 277, 604, 712, 895
PleI	GAGTC	1 cut(s)	842
PpsI	GAGTC	1 cut(s)	842
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	5 cut(s)	163, 337, 592, 651, 759
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	5 cut(s)	163, 337, 592, 651, 759
PspN4I	GGNNCC	3 cut(s)	343, 570, 709
PspPI	GGNCC	2 cut(s)	500, 860
PsuI	RGATCY	1 cut(s)	677
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	259
SaqAI	TTAA	4 cut(s)	60, 135, 326, 810
SatI	GCNGC	6 cut(s)	72, 231, 276, 603, 711, 894
Sau3AI	GATC	2 cut(s)	426, 677
Sau96I	GGNCC	2 cut(s)	500, 860
SchI	GAGTC	1 cut(s)	843
ScrFI	CCNGG	5 cut(s)	165, 339, 594, 653, 761
SduI	GDGCHC	2 cut(s)	259, 346
SexAI	ACCWGGT	1 cut(s)	337
SfaNI	GCATC	3 cut(s)	187, 454, 793
SinI	GGWCC	1 cut(s)	860
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
SphI	GCATGC	2 cut(s)	414, 900
Sse9I	AATT	2 cut(s)	9, 30
SseBI	AGGCCT	1 cut(s)	843
SsiI	CCGC	4 cut(s)	233, 347, 520, 711
SstI	GAGCTC	1 cut(s)	259
StuI	AGGCCT	1 cut(s)	843
StyD4I	CCNGG	5 cut(s)	163, 337, 592, 651, 759
TaaI	ACNGT	4 cut(s)	99, 271, 301, 355
TaiI	ACGT	1 cut(s)	215
TasI	AATT	2 cut(s)	9, 30
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	1 cut(s)	817
Tru1I	TTAA	4 cut(s)	60, 135, 326, 810
Tru9I	TTAA	4 cut(s)	60, 135, 326, 810
TscAI	CASTG	4 cut(s)	274, 402, 480, 492
TseFI	GTSAC	1 cut(s)	916
TseI	GCWGC	5 cut(s)	71, 230, 275, 602, 893
Tsp45I	GTSAC	1 cut(s)	916
TspDTI	ATGAA	1 cut(s)	636
TspRI	CASTG	4 cut(s)	274, 402, 480, 492
VpaK11BI	GGWCC	1 cut(s)	860
XagI	CCTNNNNNAGG	1 cut(s)	848
XapI	RAATTY	1 cut(s)	9
XceI	RCATGY	2 cut(s)	414, 900
XmiI	GTMKAC	1 cut(s)	729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.