Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009187

Physical Location & Seq

Genomic Coordinates Reverse (-)

27111378 .. 27118137

Gene Structure 6760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18762

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATGGCGGATGTAGCCAAAGATCTAGCCTCTGGGACTGTTGGTGGGGTAGCGCAGTTAGTAGTTGGGCATCCATTTGATACCATCAAGGTTAAACTCCAAAGCCAGCCTGCTCCAGTCCCTGGACAACCTCCTAAGTTCTCAGGTGCTATGGATGCTGTCAGGCAGACATTAGCTGCTGAAGGCCCAAGGGGTCTCTACAAAGGCATGGGAGCTCCACTTGCCACTGTTGCTGTTTTCAATGCTGTCCTCTTCACAGTTAGAGGGCAAATGGAGACTCTTTTGAGATCTGAACCTGGTGTGCCCCTTACAGTTGGCCAACAGATTGTTGCTGGGGCTGGGGCTGGAGTAGCCGTGTCCTTCCTAGCATGCCCCACTGAGTTGATCAAGTGCAGATTGCAAGCGCAGAGTGCAATGGGGAATACTGGTGCTGTTGCTGTTGCAGTGAAGTATGGAGGGCCAATGGATGTGGCAAAGCAAGTACTTAGATCAGAAGGGGGTGCAAGGGGTCTCTTCAAGGGCTTGGTTCCCACAATGGCACGTGAAATACCTGGAAATGCTGCAATGTTTGGGGTCTATGAAGCAATCAAGCAGTTTCTTGCTGGAGGTCAGGATACTTCTGGGCTGGGAAGAGGCTCTTTAATGGCGGCTGGAGGTTTGGCTGGAGCAGCCTTCTGGGGCGCTGTGTACCCTACTGATGTTGTCAAGAGTGTAATTCAGGTAGATGATTACAAAAATCCCAAATTTTCTGGTTCAATTGATGCATTTAGAAAGATCCTGGCCTCAGAAGGAGCCGCAGGCCTCTATAAGGGATTTGGACCAGCTATGTCAAGAAGTGTTCCAGCTAATGCAGCATGTTTCTTGGCATATGAGGTCACAAGGTCAAGTTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009507 GO:0009536 GO:0015075 GO:0015171 GO:0015179 GO:0015238 GO:0015318 GO:0015711 GO:0015807 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903352 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

298

Amino Acids

30.4

Weight (kDa)

9.44

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	5 - 96	5.9e-19	Mitochondrial carrier protein
Mito_carr	PF00153	103 - 201	1.1e-22	Mitochondrial carrier protein
Mito_carr	PF00153	214 - 296	1.1e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46800 AT5G46800 AT5G46800
fragaria_vesca	FvH4_7g06810 FvH4_7g06810 FvH4_7g06810
malus_domestica	MD06G1033900.v1.1 MD16G1274700.v1.1
prunus_persica	Prupe.8G063200_v2.0.a1 Prupe.8G063200_v2.0.a1
pyrus_communis	pycom06g02800 pycom16g24480
rosa_chinensis	RchiOBHm_Chr7g0209661
rosa_laevigata	RLG00000003106
rosa_multiflora	Rmu_sc0021920.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249170
rosa_rugosa	Rorug07G0115100
rosa_samantha	Rh7AG248800 Rh7BG242800 Rh7CG264700 Rh7DG254700
rosa_wichuraiana	Rw7G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AciI	CCGC	3 cut(s)	8, 647, 795
AclWI	GGATC	1 cut(s)	769
AcoI	YGGCCR	1 cut(s)	316
AcsI	RAATTY	1 cut(s)	743
AcuI	CTGAAG	1 cut(s)	201
AcvI	CACGTG	1 cut(s)	542
AfaI	GTAC	2 cut(s)	483, 689
AfiI	CCNNNNNNNGG	2 cut(s)	122, 808
AgsI	TTSAA	3 cut(s)	241, 517, 756
AjnI	CCWGG	4 cut(s)	121, 295, 550, 777
AluBI	AGCT	4 cut(s)	176, 215, 824, 845
AluI	AGCT	4 cut(s)	176, 215, 824, 845
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	3 cut(s)	200, 269, 515
AlwI	GGATC	1 cut(s)	769
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	5 cut(s)	184, 316, 458, 780, 799
ApeKI	GCWGC	4 cut(s)	176, 560, 668, 851
ApoI	RAATTY	1 cut(s)	743
AspLEI	GCGC	3 cut(s)	55, 406, 683
AspS9I	GGNCC	3 cut(s)	185, 458, 818
AvaII	GGWCC	1 cut(s)	818
BaeGI	GKGCMC	1 cut(s)	306
BalI	TGGCCA	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	217
BbrPI	CACGTG	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	4 cut(s)	163, 547, 680, 863
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	338
BciT130I	CCWGG	4 cut(s)	123, 297, 552, 779
BciVI	GTATCC	1 cut(s)	607
BclI	TGATCA	1 cut(s)	384
BcoDI	GTCTC	3 cut(s)	200, 269, 515
BfaI	CTAG	2 cut(s)	26, 365
BfoI	RGCGCY	1 cut(s)	684
BfuI	GTATCC	1 cut(s)	607
BglII	AGATCT	2 cut(s)	22, 287
BisI	GCNGC	6 cut(s)	177, 561, 648, 669, 795, 852
BlsI	GCNGC	6 cut(s)	178, 562, 649, 670, 796, 853
BmcAI	AGTACT	1 cut(s)	483
Bme1390I	CCNGG	4 cut(s)	123, 297, 552, 779
Bme18I	GGWCC	1 cut(s)	818
BmgT120I	GGNCC	3 cut(s)	185, 458, 818
BmiI	GGNNCC	2 cut(s)	528, 793
BmrFI	CCNGG	4 cut(s)	123, 297, 552, 779
BmsI	GCATC	3 cut(s)	79, 145, 751
BpmI	CTGGAG	5 cut(s)	99, 366, 624, 672, 684
BsaAI	YACGTR	1 cut(s)	542
BsaI	GGTCTC	2 cut(s)	200, 515
BsaJI	CCNNGG	2 cut(s)	121, 188
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 808
Bse1I	ACTGG	2 cut(s)	116, 430
Bse3DI	GCAATG	2 cut(s)	420, 570
BseBI	CCWGG	4 cut(s)	123, 297, 552, 779
BseDI	CCNNGG	2 cut(s)	121, 188
BseGI	GGATG	4 cut(s)	16, 70, 160, 472
BseLI	CCNNNNNNNGG	2 cut(s)	122, 808
BseMI	GCAATG	2 cut(s)	420, 570
BseMII	CTCAG	3 cut(s)	156, 369, 798
BseNI	ACTGG	2 cut(s)	116, 430
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	4 cut(s)	163, 547, 680, 863
BseYI	CCCAGC	3 cut(s)	332, 338, 625
BsgI	GTGCAG	1 cut(s)	412
BshFI	GGCC	5 cut(s)	186, 318, 460, 782, 801
BsiHKAI	GWGCWC	1 cut(s)	217
BslFI	GGGAC	2 cut(s)	49, 104
BslI	CCNNNNNNNGG	2 cut(s)	122, 808
BsmAI	GTCTC	3 cut(s)	200, 269, 515
BsmFI	GGGAC	2 cut(s)	49, 104
BsnI	GGCC	5 cut(s)	186, 318, 460, 782, 801
Bso31I	GGTCTC	2 cut(s)	200, 515
Bsp1286I	GDGCHC	2 cut(s)	217, 306
Bsp143I	GATC	5 cut(s)	22, 287, 384, 488, 774
BspACI	CCGC	3 cut(s)	8, 647, 795
BspANI	GGCC	5 cut(s)	186, 318, 460, 782, 801
BspCNI	CTCAG	3 cut(s)	155, 370, 797
BspLI	GGNNCC	2 cut(s)	528, 793
BspPI	GGATC	1 cut(s)	769
BspTNI	GGTCTC	2 cut(s)	200, 515
BsrDI	GCAATG	2 cut(s)	420, 570
BsrI	ACTGG	2 cut(s)	116, 430
BssECI	CCNNGG	2 cut(s)	121, 188
BssMI	GATC	5 cut(s)	22, 287, 384, 488, 774
BssT1I	CCWWGG	1 cut(s)	188
Bst2UI	CCWGG	4 cut(s)	123, 297, 552, 779
Bst4CI	ACNGT	4 cut(s)	40, 229, 259, 313
Bst6I	CTCTTC	3 cut(s)	257, 518, 625
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	5 cut(s)	107, 111, 370, 402, 799
BstDEI	CTNAG	5 cut(s)	135, 142, 378, 485, 784
BstENI	CCTNNNNNAGG	1 cut(s)	806
BstF5I	GGATG	4 cut(s)	16, 70, 160, 472
BstH2I	RGCGCY	1 cut(s)	684
BstHHI	GCGC	3 cut(s)	55, 406, 683
BstKTI	GATC	5 cut(s)	25, 290, 387, 491, 777
BstMAI	GTCTC	3 cut(s)	200, 269, 515
BstMBI	GATC	5 cut(s)	22, 287, 384, 488, 774
BstMWI	GCNNNNNNNGC	8 cut(s)	14, 155, 221, 230, 350, 410, 668, 851
BstNI	CCWGG	4 cut(s)	123, 297, 552, 779
BstNSI	RCATGY	2 cut(s)	372, 858
BstSCI	CCNGG	4 cut(s)	121, 295, 550, 777
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	4 cut(s)	163, 547, 680, 863
BstX2I	RGATCY	3 cut(s)	22, 287, 774
BstYI	RGATCY	3 cut(s)	22, 287, 774
BsuI	GTATCC	1 cut(s)	607
BsuRI	GGCC	5 cut(s)	186, 318, 460, 782, 801
BtsCI	GGATG	4 cut(s)	16, 70, 160, 472
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	3 cut(s)	225, 375, 450
Cac8I	GCNNGC	5 cut(s)	107, 111, 370, 402, 799
CaiI	CAGNNNCTG	1 cut(s)	122
CfoI	GCGC	3 cut(s)	55, 406, 683
Cfr13I	GGNCC	3 cut(s)	185, 458, 818
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	482, 688
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviAII	CATG	3 cut(s)	208, 369, 855
CviQI	GTAC	2 cut(s)	482, 688
DdeI	CTNAG	5 cut(s)	135, 142, 378, 485, 784
DpnI	GATC	5 cut(s)	24, 289, 386, 490, 776
DpnII	GATC	5 cut(s)	22, 287, 384, 488, 774
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	3 cut(s)	257, 518, 625
EarI	CTCTTC	3 cut(s)	257, 518, 625
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	188
Eco147I	AGGCCT	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	217
Eco31I	GGTCTC	2 cut(s)	200, 515
Eco47I	GGWCC	1 cut(s)	818
Eco53kI	GAGCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	201
Eco72I	CACGTG	1 cut(s)	542
EcoICRI	GAGCTC	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	806
EcoRII	CCWGG	4 cut(s)	121, 295, 550, 777
EcoT14I	CCWWGG	1 cut(s)	188
EcoT22I	ATGCAT	1 cut(s)	766
EcoT38I	GRGCYC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	3 cut(s)	211, 372, 858
FalI	AAGNNNNNCTT	2 cut(s)	622, 654
FaqI	GGGAC	2 cut(s)	49, 104
FatI	CATG	3 cut(s)	207, 368, 854
FauNDI	CATATG	1 cut(s)	868
FbaI	TGATCA	1 cut(s)	384
Fnu4HI	GCNGC	6 cut(s)	177, 561, 648, 669, 795, 852
FokI	GGATG	4 cut(s)	23, 57, 167, 479
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	6 cut(s)	177, 561, 648, 669, 795, 852
FspBI	CTAG	2 cut(s)	26, 365
GlaI	GCGC	3 cut(s)	54, 405, 682
GluI	GCNGC	6 cut(s)	177, 561, 648, 669, 795, 852
GsaI	CCCAGC	3 cut(s)	336, 342, 629
GsuI	CTGGAG	5 cut(s)	99, 366, 624, 672, 684
HaeII	RGCGCY	1 cut(s)	684
HaeIII	GGCC	5 cut(s)	186, 318, 460, 782, 801
HhaI	GCGC	3 cut(s)	55, 406, 683
Hin1II	CATG	3 cut(s)	211, 372, 858
Hin6I	GCGC	3 cut(s)	53, 404, 681
HinP1I	GCGC	3 cut(s)	53, 404, 681
HinfI	GANTC	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	688
Hpy188I	TCNGA	3 cut(s)	292, 493, 787
Hpy188III	TCNNGA	3 cut(s)	611, 706, 831
Hpy8I	GTNNAC	1 cut(s)	688
HpyAV	CCTTC	5 cut(s)	176, 370, 488, 682, 782
HpyCH4III	ACNGT	4 cut(s)	40, 229, 259, 313
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	8 cut(s)	393, 400, 413, 443, 503, 563, 764, 851
HpyF10VI	GCNNNNNNNGC	8 cut(s)	14, 155, 221, 230, 350, 410, 668, 851
HpyF3I	CTNAG	5 cut(s)	135, 142, 378, 485, 784
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	3 cut(s)	211, 372, 858
HspAI	GCGC	3 cut(s)	53, 404, 681
Ksp22I	TGATCA	1 cut(s)	384
Kzo9I	GATC	5 cut(s)	22, 287, 384, 488, 774
LmnI	GCTCC	5 cut(s)	118, 212, 220, 665, 791
Lsp1109I	GCAGC	4 cut(s)	163, 547, 680, 863
LweI	GCATC	3 cut(s)	79, 145, 751
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	2 cut(s)	26, 365
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	1 cut(s)	874
MalI	GATC	5 cut(s)	24, 289, 386, 490, 776
MboI	GATC	5 cut(s)	22, 287, 384, 488, 774
MboII	GAAGA	3 cut(s)	244, 505, 642
MfeI	CAATTG	1 cut(s)	756
MflI	RGATCY	3 cut(s)	22, 287, 774
MhlI	GDGCHC	2 cut(s)	217, 306
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	3 cut(s)	714, 743, 756
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	271
Mox20I	TGGCCA	1 cut(s)	318
Mph1103I	ATGCAT	1 cut(s)	766
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	2 cut(s)	93, 641
Msp20I	TGGCCA	1 cut(s)	318
MspR9I	CCNGG	4 cut(s)	123, 297, 552, 779
MunI	CAATTG	1 cut(s)	756
MvaI	CCWGG	4 cut(s)	123, 297, 552, 779
MwoI	GCNNNNNNNGC	8 cut(s)	14, 155, 221, 230, 350, 410, 668, 851
NdeI	CATATG	1 cut(s)	868
NdeII	GATC	5 cut(s)	22, 287, 384, 488, 774
NlaIII	CATG	3 cut(s)	211, 372, 858
NlaIV	GGNNCC	2 cut(s)	528, 793
NmuCI	GTSAC	1 cut(s)	874
NsiI	ATGCAT	1 cut(s)	766
NspI	RCATGY	2 cut(s)	372, 858
PaeI	GCATGC	1 cut(s)	372
PceI	AGGCCT	1 cut(s)	801
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	6 cut(s)	178, 562, 649, 670, 796, 853
PleI	GAGTC	1 cut(s)	271
PmaCI	CACGTG	1 cut(s)	542
PmlI	CACGTG	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	542
Psp124BI	GAGCTC	1 cut(s)	217
Psp6I	CCWGG	4 cut(s)	121, 295, 550, 777
PspCI	CACGTG	1 cut(s)	542
PspFI	CCCAGC	3 cut(s)	332, 338, 625
PspGI	CCWGG	4 cut(s)	121, 295, 550, 777
PspN4I	GGNNCC	2 cut(s)	528, 793
PspPI	GGNCC	3 cut(s)	185, 458, 818
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	3 cut(s)	22, 287, 774
RsaI	GTAC	2 cut(s)	483, 689
RsaNI	GTAC	2 cut(s)	482, 688
SacI	GAGCTC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	93, 641
SatI	GCNGC	6 cut(s)	177, 561, 648, 669, 795, 852
Sau3AI	GATC	5 cut(s)	22, 287, 384, 488, 774
Sau96I	GGNCC	3 cut(s)	185, 458, 818
ScaI	AGTACT	1 cut(s)	483
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	4 cut(s)	123, 297, 552, 779
SduI	GDGCHC	2 cut(s)	217, 306
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	3 cut(s)	79, 145, 751
SinI	GGWCC	1 cut(s)	818
SphI	GCATGC	1 cut(s)	372
Sse9I	AATT	3 cut(s)	714, 743, 756
SseBI	AGGCCT	1 cut(s)	801
SsiI	CCGC	3 cut(s)	8, 647, 795
SspMI	CTAG	2 cut(s)	26, 365
SstI	GAGCTC	1 cut(s)	217
StuI	AGGCCT	1 cut(s)	801
StyD4I	CCNGG	4 cut(s)	121, 295, 550, 777
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	4 cut(s)	40, 229, 259, 313
TaiI	ACGT	1 cut(s)	544
TasI	AATT	3 cut(s)	714, 743, 756
TatI	WGTACW	1 cut(s)	481
TauI	GCSGC	2 cut(s)	650, 797
Tru1I	TTAA	2 cut(s)	93, 641
Tru9I	TTAA	2 cut(s)	93, 641
TscAI	CASTG	3 cut(s)	232, 382, 450
TseFI	GTSAC	1 cut(s)	874
TseI	GCWGC	4 cut(s)	176, 560, 668, 851
Tsp45I	GTSAC	1 cut(s)	874
TspDTI	ATGAA	1 cut(s)	594
TspRI	CASTG	3 cut(s)	232, 382, 450
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	818
XagI	CCTNNNNNAGG	1 cut(s)	806
XapI	RAATTY	1 cut(s)	743
XceI	RCATGY	2 cut(s)	372, 858
XspI	CTAG	2 cut(s)	26, 365
ZrmI	AGTACT	1 cut(s)	483
Zsp2I	ATGCAT	1 cut(s)	766

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.