Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0009187

Physical Location & Seq

Genomic Coordinates Forward (+)

44445076 .. 44446172

Gene Structure 1097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003106

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGATGCTGTTAGGCAGACATTAGCTGCTGAAGGCCCAAGGGGTCTCTACAAAGGCATGGGAGCTCCACTTGCCACTGTTGCAGTCTTCAATGCTGTCCTCTTCACAGTTAGAGGCCAAATGGAGACTCTTTTGAGATCTGAACCTGGTGTGCCCCTTACAGTTGGCCAACAGATTGTTGCTGGGGCTGGGGCTGGAGTAGCCGTGTCCTTCCTAGCATGCCCCACTGAGTTGATCAAGTGCAGATTGCAAGCGCAGAGTGCAATGGGGGATACTGGTGCTGTTGCTGTTGCAGTGAAGTATGGAGGGCCAATGGATGTGGCAAAGCAAGTACTTAGATCAGAAGGGGGTGCAAGGGGTCTCTTCAAGGGCTTGGTTCCCACAATGGCACGTGAAATACCTGGAAATGCTGCAATGTTTGGGGTCTATGAAGCAATCAAGCAGTTTCTTGCTGGAGGTCAGGACACTTCTGGACTGGGAAGAGGCTCTTTAATGGCGGCTGGAGGTTTGGCTGGAGCAGCCTTCTGGGGCGCTGTGTACCCTACTGATGTTGTCAAGAGTGTAATTCAGGTAGATGATTACAAAAATCCCAAATTTTCTGGTTCAATTGATGCATTTAGAAAGATCCTGGCCTCAGAAGGAGCCGCAGGCCTCTATAAGGGATTTGGACCAGCTATGTCGAGAAGTATTCCAGCTAATGCAGCATGTTTCTTGGCATATGAGGTCACAAGGTCAAGTTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000064 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006839 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009507 GO:0009536 GO:0015075 GO:0015171 GO:0015179 GO:0015238 GO:0015318 GO:0015711 GO:0015807 GO:0015822 GO:0015849 GO:0015893 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098655 GO:0098656 GO:1902475 GO:1903352 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

249

Amino Acids

25.39

Weight (kDa)

9.3

Isoelectric Point (pI)

31.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	1 - 46	6.8e-07	Mitochondrial carrier protein
Mito_carr	PF00153	53 - 151	1.2e-22	Mitochondrial carrier protein
Mito_carr	PF00153	164 - 246	7.4e-22	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G46800 AT5G46800 AT5G46800
fragaria_vesca	FvH4_7g06810 FvH4_7g06810 FvH4_7g06810
malus_domestica	MD06G1033900.v1.1 MD16G1274700.v1.1
prunus_persica	Prupe.8G063200_v2.0.a1 Prupe.8G063200_v2.0.a1
pyrus_communis	pycom06g02800 pycom16g24480
rosa_chinensis	RchiOBHm_Chr7g0209661
rosa_laevigata	RLG00000003106
rosa_multiflora	Rmu_sc0021920.1_g000001
rosa_roxburghii	Rroxscaffold_3G00249170
rosa_rugosa	Rorug07G0115100
rosa_samantha	Rh7AG248800 Rh7BG242800 Rh7CG264700 Rh7DG254700
rosa_wichuraiana	Rw7G021100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	497, 645
AclWI	GGATC	1 cut(s)	619
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	593
AcuI	CTGAAG	1 cut(s)	51
AcvI	CACGTG	1 cut(s)	392
AfaI	GTAC	2 cut(s)	333, 539
AfiI	CCNNNNNNNGG	1 cut(s)	658
AgsI	TTSAA	3 cut(s)	91, 367, 606
AjnI	CCWGG	3 cut(s)	145, 400, 627
AluBI	AGCT	4 cut(s)	26, 65, 674, 695
AluI	AGCT	4 cut(s)	26, 65, 674, 695
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	3 cut(s)	50, 119, 365
AlwI	GGATC	1 cut(s)	619
AoxI	GGCC	6 cut(s)	34, 115, 166, 308, 630, 649
ApeKI	GCWGC	4 cut(s)	26, 410, 518, 701
ApoI	RAATTY	1 cut(s)	593
AspLEI	GCGC	2 cut(s)	256, 533
AspS9I	GGNCC	3 cut(s)	35, 308, 668
AvaII	GGWCC	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	168
BanII	GRGCYC	1 cut(s)	67
BbrPI	CACGTG	1 cut(s)	392
BbsI	GAAGAC	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	4 cut(s)	13, 397, 530, 713
BceAI	ACGGC	1 cut(s)	188
BciT130I	CCWGG	3 cut(s)	147, 402, 629
BciVI	GTATCC	1 cut(s)	265
BclI	TGATCA	1 cut(s)	234
BcoDI	GTCTC	3 cut(s)	50, 119, 365
BfaI	CTAG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	534
BfuI	GTATCC	1 cut(s)	265
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	6 cut(s)	27, 411, 498, 519, 645, 702
BlsI	GCNGC	6 cut(s)	28, 412, 499, 520, 646, 703
BmcAI	AGTACT	1 cut(s)	333
Bme1390I	CCNGG	3 cut(s)	147, 402, 629
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	3 cut(s)	35, 308, 668
BmiI	GGNNCC	2 cut(s)	378, 643
BmrFI	CCNGG	3 cut(s)	147, 402, 629
BmrI	ACTGGG	1 cut(s)	485
BmsI	GCATC	1 cut(s)	601
BmuI	ACTGGG	1 cut(s)	485
BpiI	GAAGAC	1 cut(s)	79
BpmI	CTGGAG	4 cut(s)	216, 474, 522, 534
BsaAI	YACGTR	1 cut(s)	392
BsaI	GGTCTC	2 cut(s)	50, 365
BsaJI	CCNNGG	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	658
Bse1I	ACTGG	2 cut(s)	280, 480
Bse3DI	GCAATG	2 cut(s)	270, 420
BseBI	CCWGG	3 cut(s)	147, 402, 629
BseDI	CCNNGG	1 cut(s)	38
BseGI	GGATG	2 cut(s)	10, 322
BseLI	CCNNNNNNNGG	1 cut(s)	658
BseMI	GCAATG	2 cut(s)	270, 420
BseMII	CTCAG	2 cut(s)	219, 648
BseNI	ACTGG	2 cut(s)	280, 480
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	4 cut(s)	13, 397, 530, 713
BseYI	CCCAGC	2 cut(s)	182, 188
BsgI	GTGCAG	1 cut(s)	262
BshFI	GGCC	6 cut(s)	36, 117, 168, 310, 632, 651
BsiHKAI	GWGCWC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	658
BsmAI	GTCTC	3 cut(s)	50, 119, 365
BsnI	GGCC	6 cut(s)	36, 117, 168, 310, 632, 651
Bso31I	GGTCTC	2 cut(s)	50, 365
Bsp1286I	GDGCHC	2 cut(s)	67, 156
Bsp143I	GATC	4 cut(s)	137, 234, 338, 624
BspACI	CCGC	2 cut(s)	497, 645
BspANI	GGCC	6 cut(s)	36, 117, 168, 310, 632, 651
BspCNI	CTCAG	2 cut(s)	220, 647
BspLI	GGNNCC	2 cut(s)	378, 643
BspPI	GGATC	1 cut(s)	619
BspTNI	GGTCTC	2 cut(s)	50, 365
BsrDI	GCAATG	2 cut(s)	270, 420
BsrI	ACTGG	2 cut(s)	280, 480
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	4 cut(s)	137, 234, 338, 624
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	3 cut(s)	147, 402, 629
Bst4CI	ACNGT	3 cut(s)	79, 109, 163
Bst6I	CTCTTC	3 cut(s)	107, 368, 475
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	3 cut(s)	220, 252, 649
BstDEI	CTNAG	3 cut(s)	228, 335, 634
BstENI	CCTNNNNNAGG	1 cut(s)	656
BstF5I	GGATG	2 cut(s)	10, 322
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	2 cut(s)	256, 533
BstKTI	GATC	4 cut(s)	140, 237, 341, 627
BstMAI	GTCTC	3 cut(s)	50, 119, 365
BstMBI	GATC	4 cut(s)	137, 234, 338, 624
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 80, 200, 260, 518, 701
BstNI	CCWGG	3 cut(s)	147, 402, 629
BstNSI	RCATGY	2 cut(s)	222, 708
BstSCI	CCNGG	3 cut(s)	145, 400, 627
BstSLI	GKGCMC	1 cut(s)	156
BstV1I	GCAGC	4 cut(s)	13, 397, 530, 713
BstV2I	GAAGAC	1 cut(s)	79
BstX2I	RGATCY	2 cut(s)	137, 624
BstYI	RGATCY	2 cut(s)	137, 624
BsuI	GTATCC	1 cut(s)	265
BsuRI	GGCC	6 cut(s)	36, 117, 168, 310, 632, 651
BtsCI	GGATG	2 cut(s)	10, 322
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	3 cut(s)	75, 225, 300
Cac8I	GCNNGC	3 cut(s)	220, 252, 649
CfoI	GCGC	2 cut(s)	256, 533
Cfr13I	GGNCC	3 cut(s)	35, 308, 668
CsiI	ACCWGGT	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	332, 538
CspCI	CAANNNNNGTGG	2 cut(s)	300, 335
CviAII	CATG	3 cut(s)	58, 219, 705
CviQI	GTAC	2 cut(s)	332, 538
DdeI	CTNAG	3 cut(s)	228, 335, 634
DpnI	GATC	4 cut(s)	139, 236, 340, 626
DpnII	GATC	4 cut(s)	137, 234, 338, 624
EaeI	YGGCCR	1 cut(s)	166
Eam1104I	CTCTTC	3 cut(s)	107, 368, 475
EarI	CTCTTC	3 cut(s)	107, 368, 475
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	38
Eco147I	AGGCCT	1 cut(s)	651
Eco24I	GRGCYC	1 cut(s)	67
Eco31I	GGTCTC	2 cut(s)	50, 365
Eco47I	GGWCC	1 cut(s)	668
Eco53kI	GAGCTC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	51
Eco72I	CACGTG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	65
EcoNI	CCTNNNNNAGG	1 cut(s)	656
EcoRII	CCWGG	3 cut(s)	145, 400, 627
EcoT14I	CCWWGG	1 cut(s)	38
EcoT22I	ATGCAT	1 cut(s)	616
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	38
FaeI	CATG	3 cut(s)	61, 222, 708
FaiI	YATR	9 cut(s)	59, 220, 303, 429, 657, 677, 706, 718, 720
FalI	AAGNNNNNCTT	2 cut(s)	472, 504
FatI	CATG	3 cut(s)	57, 218, 704
FauNDI	CATATG	1 cut(s)	718
FbaI	TGATCA	1 cut(s)	234
Fnu4HI	GCNGC	6 cut(s)	27, 411, 498, 519, 645, 702
FokI	GGATG	2 cut(s)	17, 329
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	6 cut(s)	27, 411, 498, 519, 645, 702
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	2 cut(s)	255, 532
GluI	GCNGC	6 cut(s)	27, 411, 498, 519, 645, 702
GsaI	CCCAGC	2 cut(s)	186, 192
GsuI	CTGGAG	4 cut(s)	216, 474, 522, 534
HaeII	RGCGCY	1 cut(s)	534
HaeIII	GGCC	6 cut(s)	36, 117, 168, 310, 632, 651
HhaI	GCGC	2 cut(s)	256, 533
Hin1II	CATG	3 cut(s)	61, 222, 708
Hin6I	GCGC	2 cut(s)	254, 531
HinP1I	GCGC	2 cut(s)	254, 531
HinfI	GANTC	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	538
Hpy188I	TCNGA	3 cut(s)	142, 343, 637
Hpy188III	TCNNGA	4 cut(s)	461, 471, 556, 681
Hpy8I	GTNNAC	1 cut(s)	538
HpyAV	CCTTC	5 cut(s)	26, 220, 338, 532, 632
HpyCH4III	ACNGT	3 cut(s)	79, 109, 163
HpyCH4IV	ACGT	1 cut(s)	391
HpyCH4V	TGCA	9 cut(s)	83, 243, 250, 263, 293, 353, 413, 614, 701
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 80, 200, 260, 518, 701
HpyF3I	CTNAG	3 cut(s)	228, 335, 634
HpySE526I	ACGT	1 cut(s)	391
Hsp92II	CATG	3 cut(s)	61, 222, 708
HspAI	GCGC	2 cut(s)	254, 531
Ksp22I	TGATCA	1 cut(s)	234
Kzo9I	GATC	4 cut(s)	137, 234, 338, 624
LmnI	GCTCC	4 cut(s)	62, 70, 515, 641
Lsp1109I	GCAGC	4 cut(s)	13, 397, 530, 713
LweI	GCATC	1 cut(s)	601
MabI	ACCWGGT	1 cut(s)	145
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	391
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	4 cut(s)	139, 236, 340, 626
MboI	GATC	4 cut(s)	137, 234, 338, 624
MboII	GAAGA	4 cut(s)	79, 94, 355, 492
MfeI	CAATTG	1 cut(s)	606
MflI	RGATCY	2 cut(s)	137, 624
MhlI	GDGCHC	2 cut(s)	67, 156
MlsI	TGGCCA	1 cut(s)	168
MluCI	AATT	3 cut(s)	564, 593, 606
MluNI	TGGCCA	1 cut(s)	168
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	9 cut(s)	107, 110, 299, 449, 476, 497, 643, 662, 715
Mox20I	TGGCCA	1 cut(s)	168
Mph1103I	ATGCAT	1 cut(s)	616
MscI	TGGCCA	1 cut(s)	168
MseI	TTAA	1 cut(s)	491
Msp20I	TGGCCA	1 cut(s)	168
MspR9I	CCNGG	3 cut(s)	147, 402, 629
MunI	CAATTG	1 cut(s)	606
MvaI	CCWGG	3 cut(s)	147, 402, 629
MwoI	GCNNNNNNNGC	6 cut(s)	71, 80, 200, 260, 518, 701
NdeI	CATATG	1 cut(s)	718
NdeII	GATC	4 cut(s)	137, 234, 338, 624
NlaIII	CATG	3 cut(s)	61, 222, 708
NlaIV	GGNNCC	2 cut(s)	378, 643
NmuCI	GTSAC	1 cut(s)	724
NsiI	ATGCAT	1 cut(s)	616
NspI	RCATGY	2 cut(s)	222, 708
PaeI	GCATGC	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	651
PkrI	GCNGC	6 cut(s)	28, 412, 499, 520, 646, 703
PleI	GAGTC	1 cut(s)	121
PmaCI	CACGTG	1 cut(s)	392
PmlI	CACGTG	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	121
Ppu21I	YACGTR	1 cut(s)	392
Psp124BI	GAGCTC	1 cut(s)	67
Psp6I	CCWGG	3 cut(s)	145, 400, 627
PspCI	CACGTG	1 cut(s)	392
PspFI	CCCAGC	2 cut(s)	182, 188
PspGI	CCWGG	3 cut(s)	145, 400, 627
PspN4I	GGNNCC	2 cut(s)	378, 643
PspPI	GGNCC	3 cut(s)	35, 308, 668
PsuI	RGATCY	2 cut(s)	137, 624
RsaI	GTAC	2 cut(s)	333, 539
RsaNI	GTAC	2 cut(s)	332, 538
SacI	GAGCTC	1 cut(s)	67
SaqAI	TTAA	1 cut(s)	491
SatI	GCNGC	6 cut(s)	27, 411, 498, 519, 645, 702
Sau3AI	GATC	4 cut(s)	137, 234, 338, 624
Sau96I	GGNCC	3 cut(s)	35, 308, 668
ScaI	AGTACT	1 cut(s)	333
SchI	GAGTC	1 cut(s)	121
ScrFI	CCNGG	3 cut(s)	147, 402, 629
SduI	GDGCHC	2 cut(s)	67, 156
SexAI	ACCWGGT	1 cut(s)	145
SfaNI	GCATC	1 cut(s)	601
SinI	GGWCC	1 cut(s)	668
SphI	GCATGC	1 cut(s)	222
Sse9I	AATT	3 cut(s)	564, 593, 606
SseBI	AGGCCT	1 cut(s)	651
SsiI	CCGC	2 cut(s)	497, 645
SspMI	CTAG	1 cut(s)	215
SstI	GAGCTC	1 cut(s)	67
StuI	AGGCCT	1 cut(s)	651
StyD4I	CCNGG	3 cut(s)	145, 400, 627
StyI	CCWWGG	1 cut(s)	38
TaaI	ACNGT	3 cut(s)	79, 109, 163
TaiI	ACGT	1 cut(s)	394
TaqI	TCGA	1 cut(s)	680
TasI	AATT	3 cut(s)	564, 593, 606
TatI	WGTACW	1 cut(s)	331
TauI	GCSGC	2 cut(s)	500, 647
Tru1I	TTAA	1 cut(s)	491
Tru9I	TTAA	1 cut(s)	491
TscAI	CASTG	3 cut(s)	82, 232, 300
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	4 cut(s)	26, 410, 518, 701
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	1 cut(s)	444
TspRI	CASTG	3 cut(s)	82, 232, 300
VpaK11BI	GGWCC	1 cut(s)	668
XagI	CCTNNNNNAGG	1 cut(s)	656
XapI	RAATTY	1 cut(s)	593
XceI	RCATGY	2 cut(s)	222, 708
XspI	CTAG	1 cut(s)	215
ZrmI	AGTACT	1 cut(s)	333
Zsp2I	ATGCAT	1 cut(s)	616

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.