Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011895

Physical Location & Seq

Genomic Coordinates Forward (+)

19274853 .. 19277383

Gene Structure 2531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGCAAGAAACAGACAGAGATATTCACATCTCTGATGGTACCATGAACAAGGAAGAGCAGAGCCCAAATAATGAAGAGATGGTTGAAGCGTTTCGTAACTTGCTTCTCCTCCATGGCCACTTACCTGATAAGCACGGGGATCATAATACACTTCGCAGGTTTCTTAAAATGAGAGATTTTGATCTGGAGAAATCTAAAGAGGCTTTTCTCAATTATATGAAGTGGCGAGTGGACTATAAAGTGGATTTGATCTCTCAGAAGTTTAAGTTTGAGGAATATGGTGAAGTCAAGAAACATTACCCTCATGGGTTTCATAAGGTAGACAAAACTGGTAGGCCTATTTACATTGAGAGACTCGGGATGACTGACCTTAACGCGTTTCTCAAAGCAACCACCATTGAGAGATATGTTAACTATCATATCAAAGAACAAGAGAAAACAATGAGCTTGAGATATCCAGCATGTTCAATTGCTTCAGATAAGCATGTTTCGTCAACAACAACCATATTGGATGTCTCTGGAGTGGGAATGTCAAACTTCTCAAAACCTGCGAGATCCCTCTTTATGGAAATTCAAAAGATAGACAGCAACTACTACCCTGAGACTTTGCATCGCCTCTTCGTTGTCAATGCCAGTTCTGGATTCCGGATGTTGTGGCTTGCACTCAAGACCTTTCTTGATGCTCGGACATTGGCCAAAGTTCAAGTGCTAGGACCCAATTACCTTGGAGAGCTACTTGAAGCAATAGAACCAAGCAACTTACCAACATTTCTTGGAGGAAATTGCACCTGTTCAGATCATGGAGGCTGTCTTTTCAGTGATGAAGGACCTTGGAATGATCCAGGCATCAAGGAAAAGATCGAGGAGCCTTCCACAATCGAAGATGCTCATTCAGAGACTATGGATAAAGTCTCAGAAAATGCTCCAGCCAATCAAAAGGAAAGTTTAGGCGAGGTCATGATTACAATGGAGAAGTATGCTGCCCTGAAAACTGCTGTCAAGGATTCCCAGAAGAGGATAGAAATGTTGGAAATATCACTCCATGAGACTAAAAAGGTCTTGAATGGACTCGCGGAGATCATTGAGGCCATTCAACCGAATCAACCTATAACCAAATGCAAACCGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

376

Amino Acids

42.93

Weight (kDa)

5.99

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	98 - 260	1.8e-27	CRAL/TRIO domain
CRAL_TRIO_2	PF13716	155 - 262	9.2e-06	Divergent CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47510 AT5G47510 AT5G47510 AT5G47510
fragaria_vesca	FvH4_5g18760 FvH4_5g18760
malus_domestica	MD00G1043800.v1.1
prunus_persica	Prupe.5G071000_v2.0.a1
pyrus_communis	pycom976g00060
rosa_chinensis	RchiOBHm_Chr7g0203101
rosa_laevigata	RLG00000003552
rosa_multiflora	Rmu_sc0004999.1_g000010
rosa_roxburghii	Rroxscaffold_3G00254070
rosa_rugosa	Rorug07G0074600
rosa_samantha	Rh7AG203400 Rh7BG203000 Rh7CG214100 Rh7DG210100
rosa_wichuraiana	Rw7G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	147, 556
Acc65I	GGTACC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	38
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	2 cut(s)	377, 1073
AccIII	TCCGGA	1 cut(s)	645
AciI	CCGC	1 cut(s)	1073
AclWI	GGATC	3 cut(s)	147, 549, 833
AcoI	YGGCCR	2 cut(s)	115, 693
AcsI	RAATTY	1 cut(s)	570
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	1 cut(s)	40
AfiI	CCNNNNNNNGG	2 cut(s)	565, 1014
AflIII	ACRYGT	1 cut(s)	375
AgeI	ACCGGT	1 cut(s)	1123
AgsI	TTSAA	7 cut(s)	86, 468, 575, 704, 740, 1063, 1094
AjnI	CCWGG	1 cut(s)	841
AluBI	AGCT	2 cut(s)	447, 733
AluI	AGCT	2 cut(s)	447, 733
Alw26I	GTCTC	6 cut(s)	346, 520, 596, 890, 916, 1040
AlwI	GGATC	3 cut(s)	147, 549, 833
Ama87I	CYCGRG	1 cut(s)	356
Aor13HI	TCCGGA	1 cut(s)	645
AoxI	GGCC	4 cut(s)	115, 335, 693, 1086
ApeKI	GCWGC	1 cut(s)	980
ApoI	RAATTY	1 cut(s)	570
AsiGI	ACCGGT	1 cut(s)	1123
Asp700I	GAANNNNTTC	1 cut(s)	90
Asp718I	GGTACC	1 cut(s)	38
AspS9I	GGNCC	2 cut(s)	713, 827
AsuHPI	GGTGA	1 cut(s)	293
AvaI	CYCGRG	1 cut(s)	356
AvaII	GGWCC	2 cut(s)	713, 827
BalI	TGGCCA	2 cut(s)	117, 695
BanI	GGYRCC	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	967
BccI	CCATC	2 cut(s)	29, 73
BciT130I	CCWGG	1 cut(s)	843
BcoDI	GTCTC	6 cut(s)	346, 520, 596, 890, 916, 1040
BfaI	CTAG	1 cut(s)	710
BfuAI	ACCTGC	2 cut(s)	147, 556
BisI	GCNGC	1 cut(s)	981
BlsI	GCNGC	1 cut(s)	982
Bme1390I	CCNGG	1 cut(s)	843
Bme18I	GGWCC	2 cut(s)	713, 827
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	2 cut(s)	713, 827
BmiI	GGNNCC	3 cut(s)	40, 715, 867
BmrFI	CCNGG	1 cut(s)	843
BmsI	GCATC	4 cut(s)	619, 670, 855, 874
BpmI	CTGGAG	3 cut(s)	206, 540, 909
BpuEI	CTTGAG	2 cut(s)	469, 650
BsaBI	GATNNNNATC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	112, 724, 830
BsaWI	WCCGGW	2 cut(s)	645, 1123
Bsc4I	CCNNNNNNNGG	2 cut(s)	565, 1014
Bse118I	RCCGGY	1 cut(s)	1123
Bse1I	ACTGG	2 cut(s)	334, 633
Bse8I	GATNNNNATC	1 cut(s)	180
BseAI	TCCGGA	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	843
BseDI	CCNNGG	3 cut(s)	112, 724, 830
BseGI	GGATG	3 cut(s)	366, 517, 654
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	565, 1014
BseMII	CTCAG	3 cut(s)	269, 591, 927
BseNI	ACTGG	2 cut(s)	334, 633
BseRI	GAGGAG	2 cut(s)	98, 878
BseXI	GCAGC	1 cut(s)	967
Bsh1236I	CGCG	2 cut(s)	377, 1073
BshFI	GGCC	4 cut(s)	117, 337, 695, 1088
BshNI	GGYRCC	1 cut(s)	38
BshTI	ACCGGT	1 cut(s)	1123
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	646, 1124
BslI	CCNNNNNNNGG	2 cut(s)	565, 1014
BsmAI	GTCTC	6 cut(s)	346, 520, 596, 890, 916, 1040
BsnI	GGCC	4 cut(s)	117, 337, 695, 1088
BsoBI	CYCGRG	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp13I	TCCGGA	1 cut(s)	645
Bsp143I	GATC	8 cut(s)	139, 181, 249, 554, 796, 838, 858, 1077
Bsp19I	CCATGG	1 cut(s)	112
BspACI	CCGC	1 cut(s)	1073
BspANI	GGCC	4 cut(s)	117, 337, 695, 1088
BspCNI	CTCAG	3 cut(s)	268, 592, 926
BspEI	TCCGGA	1 cut(s)	645
BspFNI	CGCG	2 cut(s)	377, 1073
BspHI	TCATGA	1 cut(s)	957
BspLI	GGNNCC	3 cut(s)	40, 715, 867
BspMI	ACCTGC	2 cut(s)	147, 556
BspPI	GGATC	3 cut(s)	147, 549, 833
BspQI	GCTCTTC	1 cut(s)	48
BspT107I	GGYRCC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	1123
BsrI	ACTGG	2 cut(s)	334, 633
BssAI	RCCGGY	1 cut(s)	1123
BssECI	CCNNGG	3 cut(s)	112, 724, 830
BssMI	GATC	8 cut(s)	139, 181, 249, 554, 796, 838, 858, 1077
BssT1I	CCWWGG	3 cut(s)	112, 724, 830
Bst2UI	CCWGG	1 cut(s)	843
Bst6I	CTCTTC	4 cut(s)	48, 69, 623, 1007
BstC8I	GCNNGC	1 cut(s)	660
BstDEI	CTNAG	3 cut(s)	255, 600, 913
BstDSI	CCRYGG	1 cut(s)	112
BstF5I	GGATG	3 cut(s)	366, 517, 654
BstFNI	CGCG	2 cut(s)	377, 1073
BstKTI	GATC	8 cut(s)	142, 184, 252, 557, 799, 841, 861, 1080
BstMAI	GTCTC	6 cut(s)	346, 520, 596, 890, 916, 1040
BstMBI	GATC	8 cut(s)	139, 181, 249, 554, 796, 838, 858, 1077
BstNI	CCWGG	1 cut(s)	843
BstNSI	RCATGY	2 cut(s)	465, 488
BstSCI	CCNGG	1 cut(s)	841
BstUI	CGCG	2 cut(s)	377, 1073
BstV1I	GCAGC	1 cut(s)	967
BstX2I	RGATCY	1 cut(s)	554
BstYI	RGATCY	1 cut(s)	554
BsuRI	GGCC	4 cut(s)	117, 337, 695, 1088
BtgI	CCRYGG	1 cut(s)	112
BtgZI	GCGATG	1 cut(s)	596
BtsCI	GGATG	3 cut(s)	366, 517, 654
BtsIMutI	CAGTG	1 cut(s)	823
BveI	ACCTGC	2 cut(s)	147, 556
Cac8I	GCNNGC	1 cut(s)	660
CciI	TCATGA	1 cut(s)	957
Cfr10I	RCCGGY	1 cut(s)	1123
Cfr13I	GGNCC	2 cut(s)	713, 827
Csp6I	GTAC	1 cut(s)	39
CspAI	ACCGGT	1 cut(s)	1123
CviAII	CATG	8 cut(s)	43, 113, 305, 462, 485, 800, 958, 1043
CviQI	GTAC	1 cut(s)	39
DdeI	CTNAG	3 cut(s)	255, 600, 913
DpnI	GATC	8 cut(s)	141, 183, 251, 556, 798, 840, 860, 1079
DpnII	GATC	8 cut(s)	139, 181, 249, 554, 796, 838, 858, 1077
EaeI	YGGCCR	2 cut(s)	115, 693
Eam1104I	CTCTTC	4 cut(s)	48, 69, 623, 1007
EarI	CTCTTC	4 cut(s)	48, 69, 623, 1007
Eco130I	CCWWGG	3 cut(s)	112, 724, 830
Eco147I	AGGCCT	1 cut(s)	337
Eco24I	GRGCYC	1 cut(s)	65
Eco32I	GATATC	1 cut(s)	455
Eco47I	GGWCC	2 cut(s)	713, 827
Eco57I	CTGAAG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	356
EcoO109I	RGGNCCY	2 cut(s)	713, 827
EcoRII	CCWGG	1 cut(s)	841
EcoRV	GATATC	1 cut(s)	455
EcoT14I	CCWWGG	3 cut(s)	112, 724, 830
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	3 cut(s)	112, 724, 830
FaeI	CATG	8 cut(s)	46, 116, 308, 465, 488, 803, 961, 1046
FatI	CATG	8 cut(s)	42, 112, 304, 461, 484, 799, 957, 1042
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	981
FokI	GGATG	3 cut(s)	373, 524, 661
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	981
FspBI	CTAG	1 cut(s)	710
GluI	GCNGC	1 cut(s)	981
GsuI	CTGGAG	3 cut(s)	206, 540, 909
HaeIII	GGCC	4 cut(s)	117, 337, 695, 1088
HapII	CCGG	2 cut(s)	646, 1124
Hin1II	CATG	8 cut(s)	46, 116, 308, 465, 488, 803, 961, 1046
HincII	GTYRAC	2 cut(s)	412, 495
HindII	GTYRAC	2 cut(s)	412, 495
HinfI	GANTC	5 cut(s)	354, 642, 1004, 1068, 1099
HpaI	GTTAAC	1 cut(s)	412
HpaII	CCGG	2 cut(s)	646, 1124
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	4 cut(s)	232, 322, 412, 495
Hpy188I	TCNGA	7 cut(s)	34, 258, 478, 687, 796, 895, 916
Hpy8I	GTNNAC	4 cut(s)	232, 322, 412, 495
HpyAV	CCTTC	2 cut(s)	818, 879
HpyCH4V	TGCA	5 cut(s)	4, 610, 662, 786, 1119
HpyF3I	CTNAG	3 cut(s)	255, 600, 913
Hsp92II	CATG	8 cut(s)	46, 116, 308, 465, 488, 803, 961, 1046
Kpn2I	TCCGGA	1 cut(s)	645
KpnI	GGTACC	1 cut(s)	42
KspAI	GTTAAC	1 cut(s)	412
Kzo9I	GATC	8 cut(s)	139, 181, 249, 554, 796, 838, 858, 1077
LguI	GCTCTTC	1 cut(s)	48
LmnI	GCTCC	2 cut(s)	865, 928
Lsp1109I	GCAGC	1 cut(s)	967
LweI	GCATC	4 cut(s)	619, 670, 855, 874
MaeI	CTAG	1 cut(s)	710
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	8 cut(s)	141, 183, 251, 556, 798, 840, 860, 1079
MboI	GATC	8 cut(s)	139, 181, 249, 554, 796, 838, 858, 1077
MboII	GAAGA	5 cut(s)	65, 86, 610, 893, 1024
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	1 cut(s)	554
MhlI	GDGCHC	1 cut(s)	65
MlsI	TGGCCA	2 cut(s)	117, 695
MluCI	AATT	5 cut(s)	211, 468, 570, 718, 781
MluI	ACGCGT	1 cut(s)	375
MluNI	TGGCCA	2 cut(s)	117, 695
MlyI	GAGTC	2 cut(s)	348, 1062
MmeI	TCCRAC	1 cut(s)	1008
Mox20I	TGGCCA	2 cut(s)	117, 695
MroI	TCCGGA	1 cut(s)	645
MroXI	GAANNNNTTC	1 cut(s)	90
MscI	TGGCCA	2 cut(s)	117, 695
MseI	TTAA	4 cut(s)	165, 264, 372, 411
Msp20I	TGGCCA	2 cut(s)	117, 695
MspI	CCGG	2 cut(s)	646, 1124
MspR9I	CCNGG	1 cut(s)	843
MunI	CAATTG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	843
MvnI	CGCG	2 cut(s)	377, 1073
NcoI	CCATGG	1 cut(s)	112
NdeII	GATC	8 cut(s)	139, 181, 249, 554, 796, 838, 858, 1077
NlaIII	CATG	8 cut(s)	46, 116, 308, 465, 488, 803, 961, 1046
NlaIV	GGNNCC	3 cut(s)	40, 715, 867
NspI	RCATGY	2 cut(s)	465, 488
PagI	TCATGA	1 cut(s)	957
PceI	AGGCCT	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	48
PdmI	GAANNNNTTC	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	642, 1004, 1099
PinAI	ACCGGT	1 cut(s)	1123
PkrI	GCNGC	1 cut(s)	982
PleI	GAGTC	2 cut(s)	348, 1062
PpsI	GAGTC	2 cut(s)	348, 1062
PpuMI	RGGWCCY	2 cut(s)	713, 827
Psp5II	RGGWCCY	2 cut(s)	713, 827
Psp6I	CCWGG	1 cut(s)	841
PspGI	CCWGG	1 cut(s)	841
PspN4I	GGNNCC	3 cut(s)	40, 715, 867
PspPI	GGNCC	2 cut(s)	713, 827
PspPPI	RGGWCCY	2 cut(s)	713, 827
PsuI	RGATCY	1 cut(s)	554
RsaI	GTAC	1 cut(s)	40
RsaNI	GTAC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	48
SaqAI	TTAA	4 cut(s)	165, 264, 372, 411
SatI	GCNGC	1 cut(s)	981
Sau3AI	GATC	8 cut(s)	139, 181, 249, 554, 796, 838, 858, 1077
Sau96I	GGNCC	2 cut(s)	713, 827
SchI	GAGTC	2 cut(s)	348, 1062
ScrFI	CCNGG	1 cut(s)	843
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	4 cut(s)	619, 670, 855, 874
SinI	GGWCC	2 cut(s)	713, 827
SmlI	CTYRAG	2 cut(s)	448, 665
SmoI	CTYRAG	2 cut(s)	448, 665
Sse9I	AATT	5 cut(s)	211, 468, 570, 718, 781
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	1 cut(s)	1073
SspMI	CTAG	1 cut(s)	710
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	841
StyI	CCWWGG	3 cut(s)	112, 724, 830
TaqI	TCGA	2 cut(s)	861, 879
TasI	AATT	5 cut(s)	211, 468, 570, 718, 781
TfiI	GAWTC	3 cut(s)	642, 1004, 1099
Tru1I	TTAA	4 cut(s)	165, 264, 372, 411
Tru9I	TTAA	4 cut(s)	165, 264, 372, 411
TscAI	CASTG	1 cut(s)	823
TseI	GCWGC	1 cut(s)	980
TspDTI	ATGAA	5 cut(s)	59, 87, 233, 302, 837
TspRI	CASTG	1 cut(s)	823
VpaK11BI	GGWCC	2 cut(s)	713, 827
XapI	RAATTY	1 cut(s)	570
XceI	RCATGY	2 cut(s)	465, 488
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	90
XspI	CTAG	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.