Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00000976

Orthogroup ID

OG0011895

Physical Location & Seq

Genomic Coordinates Forward (+)

119188 .. 122328

Gene Structure 3141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom976g00060.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGCATAAACTAAAACAAGACAGGGATATATACATATCTAAAGGTGTTGGAGATGGAGACGGAGATATTGCGTCGAGACGAGGGAAGACGAAAATTTTTCATCCGCCTATTGAAAGCCATTGGCATCTCCCTCCCCCAGAGAAAAACAAGCCTGATTCATCTATAATGTCAAACTTAGGCTTCAAGAAAATGCTGTCATATCCGCTCAAGTTTCGGGACTCATTCAAGAGGCTCGGAGGGAGTAGTAGTAGGAGCTTCAAAACGGTTCTCGGAGGAGTTCATGATCCGAAAGATGAAAAATATGTTGAGTCTTTCAGAGAATTGCTTTTTATTGAGGGTCAACTTCCTCCACAGCACAATGATTATCATACCCTTTTAAGGTTTCTTAGAACGAGGGACTTCGATTTTGTGAAAGCAAAAGATGCGTTCTTGATTTATCTTAAGTGGCGTGAGGATTATCAGGTTGATGAAATTCCAAAGGAGTTTAAGTTTGAGGAGTATGAAACAGTAAAGAAATGCTATCCCCATGGATATCATGGTGTAGACCGATATGGTAGACCAGTATACATCGAAAGGATCGGGATGGTGGACCTTGACAAACTTCTGCAAGTAACTACCCCCGAAAGATTCATCAAGTATCATGTTTCCGAACAAGAGAAAACATTAAATTTGAGATACCCTGCGTGTTCGATTGCAGCTAAGAGGCATGTAGCATCTACAACAAGTATTTTGGATGTGCATGGAGTGGGATTGGCTAATTTCTCAAAGCCTGCCAGATATATTTTTATGGAAATTCAGAAGATTGATAGCAATTACTACCCAGAGACTCTAAATTGCCTCTTTATCGTCAACGCTGGATCCGGGTTTAAAATGCTGTGGAAAGTAGTGAAGGCTTTCCTTGATACAAGAACATTAGCAAAGATTCAAGTGTTGGGATACAATTATCACAGTGAGCTGTTTGATATTGTTGATCGAAGTAATTTGCCAACTTTTCTGGGTGGAAACTGCACCTGTTCCGATTACGGGGGATGCCTTTTCAGTGATAGAGGACCCTGGAACAATCCTGAAATTACAGAACTGCTTCAGGCGATTTCAGTTGGCAACGAGCTAAACAACTGTGAAGAAAACGGTGATCAGGGATCAGAAGAGGCGTTGGTGCGCGACACGAGAATCCAGGATTTGGAAGCAGCGCTTAGCGACGTGAAGAAGAAGATCGAAGCATTAGAAGCTGCACTTAAAGAAACCAAGATAGTCTTGAAAGAACTCGGGAAGGATGTACAAGAGTTGAGATCAACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

434

Amino Acids

49.64

Weight (kDa)

7.2

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47510 AT5G47510 AT5G47510 AT5G47510
fragaria_vesca	FvH4_5g18760 FvH4_5g18760
malus_domestica	MD00G1043800.v1.1
prunus_persica	Prupe.5G071000_v2.0.a1
pyrus_communis	pycom976g00060
rosa_chinensis	RchiOBHm_Chr7g0203101
rosa_laevigata	RLG00000003552
rosa_multiflora	Rmu_sc0004999.1_g000010
rosa_roxburghii	Rroxscaffold_3G00254070
rosa_rugosa	Rorug07G0074600
rosa_samantha	Rh7AG203400 Rh7BG203000 Rh7CG214100 Rh7DG210100
rosa_wichuraiana	Rw7G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1180
AccBSI	CCGCTC	1 cut(s)	205
AccI	GTMKAC	3 cut(s)	543, 556, 564
AccII	CGCG	1 cut(s)	1161
AciI	CCGC	2 cut(s)	104, 203
AclWI	GGATC	5 cut(s)	278, 584, 852, 865, 1147
AcsI	RAATTY	4 cut(s)	93, 471, 667, 792
AcuI	CTGAAG	1 cut(s)	1067
AfaI	GTAC	1 cut(s)	1278
AfeI	AGCGCT	1 cut(s)	1191
AfiI	CCNNNNNNNGG	3 cut(s)	378, 1023, 1180
AflII	CTTAAG	1 cut(s)	440
AgsI	TTSAA	6 cut(s)	113, 184, 226, 259, 926, 1258
AjiI	CACGTC	1 cut(s)	1201
AjnI	CCWGG	2 cut(s)	1052, 1173
AluBI	AGCT	5 cut(s)	255, 698, 955, 1108, 1229
AluI	AGCT	5 cut(s)	255, 698, 955, 1108, 1229
Alw26I	GTCTC	3 cut(s)	51, 70, 818
AlwI	GGATC	5 cut(s)	278, 584, 852, 865, 1147
Ama87I	CYCGRG	1 cut(s)	1265
Aor51HI	AGCGCT	1 cut(s)	1191
ApeKI	GCWGC	3 cut(s)	695, 1187, 1229
ApoI	RAATTY	4 cut(s)	93, 471, 667, 792
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
Asp700I	GAANNNNTTC	2 cut(s)	893, 1080
AspLEI	GCGC	2 cut(s)	1161, 1192
AspS9I	GGNCC	2 cut(s)	589, 1049
AsuC2I	CCSGG	1 cut(s)	862
AsuHPI	GGTGA	1 cut(s)	1142
AvaI	CYCGRG	1 cut(s)	1265
AvaII	GGWCC	2 cut(s)	589, 1049
BamHI	GGATCC	1 cut(s)	857
BauI	CACGAG	1 cut(s)	1165
BbsI	GAAGAC	1 cut(s)	92
BbvI	GCAGC	3 cut(s)	707, 1199, 1216
BccI	CCATC	2 cut(s)	47, 577
BciT130I	CCWGG	2 cut(s)	1054, 1175
BciVI	GTATCC	1 cut(s)	929
BclI	TGATCA	1 cut(s)	1132
BcnI	CCSGG	1 cut(s)	862
BcoDI	GTCTC	3 cut(s)	51, 70, 818
BfaI	CTAG	1 cut(s)	1300
BfoI	RGCGCY	1 cut(s)	1193
BfrI	CTTAAG	1 cut(s)	440
BfuI	GTATCC	1 cut(s)	929
BisI	GCNGC	3 cut(s)	696, 1188, 1230
BlpI	GCTNAGC	1 cut(s)	1193
BlsI	GCNGC	3 cut(s)	697, 1189, 1231
Bme1390I	CCNGG	3 cut(s)	862, 1054, 1175
Bme18I	GGWCC	2 cut(s)	589, 1049
BmeT110I	CYCGRG	1 cut(s)	1265
BmgBI	CACGTC	1 cut(s)	1201
BmgT120I	GGNCC	2 cut(s)	589, 1049
BmiI	GGNNCC	2 cut(s)	859, 1051
BmrFI	CCNGG	3 cut(s)	862, 1054, 1175
BmsI	GCATC	4 cut(s)	133, 412, 722, 1019
BpiI	GAAGAC	1 cut(s)	92
Bpu1102I	GCTNAGC	1 cut(s)	1193
BpuEI	CTTGAG	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	862
BsaJI	CCNNGG	2 cut(s)	526, 1052
BsaXI	ACNNNNNCTCC	4 cut(s)	232, 262, 473, 503
Bsc4I	CCNNNNNNNGG	3 cut(s)	378, 1023, 1180
Bse1I	ACTGG	1 cut(s)	560
BseBI	CCWGG	2 cut(s)	1054, 1175
BseDI	CCNNGG	2 cut(s)	526, 1052
BseGI	GGATG	5 cut(s)	100, 588, 739, 1034, 1279
BseLI	CCNNNNNNNGG	3 cut(s)	378, 1023, 1180
BseNI	ACTGG	1 cut(s)	560
BseRI	GAGGAG	2 cut(s)	288, 509
BseXI	GCAGC	3 cut(s)	707, 1199, 1216
BsgI	GTGCAG	2 cut(s)	991, 1215
Bsh1236I	CGCG	1 cut(s)	1161
BsiHKCI	CYCGRG	1 cut(s)	1265
BsiSI	CCGG	1 cut(s)	861
BslFI	GGGAC	2 cut(s)	230, 410
BslI	CCNNNNNNNGG	3 cut(s)	378, 1023, 1180
BsmAI	GTCTC	3 cut(s)	51, 70, 818
BsmBI	CGTCTC	2 cut(s)	51, 70
BsmFI	GGGAC	2 cut(s)	230, 410
BsoBI	CYCGRG	1 cut(s)	1265
Bsp1407I	TGTACA	1 cut(s)	1276
Bsp143I	GATC	8 cut(s)	283, 576, 857, 970, 1132, 1139, 1212, 1289
Bsp1720I	GCTNAGC	1 cut(s)	1193
Bsp19I	CCATGG	1 cut(s)	526
BspACI	CCGC	2 cut(s)	104, 203
BspFNI	CGCG	1 cut(s)	1161
BspHI	TCATGA	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	859, 1051
BspPI	GGATC	5 cut(s)	278, 584, 852, 865, 1147
BspTI	CTTAAG	1 cut(s)	440
BsrBI	CCGCTC	1 cut(s)	205
BsrGI	TGTACA	1 cut(s)	1276
BsrI	ACTGG	1 cut(s)	560
BssECI	CCNNGG	2 cut(s)	526, 1052
BssMI	GATC	8 cut(s)	283, 576, 857, 970, 1132, 1139, 1212, 1289
BssNAI	GTATAC	1 cut(s)	565
BssSI	CACGAG	1 cut(s)	1165
BssT1I	CCWWGG	1 cut(s)	526
Bst1107I	GTATAC	1 cut(s)	565
Bst2BI	CACGAG	1 cut(s)	1165
Bst2UI	CCWGG	2 cut(s)	1054, 1175
Bst4CI	ACNGT	5 cut(s)	265, 508, 950, 1118, 1130
Bst6I	CTCTTC	1 cut(s)	1140
BstAFI	CTTAAG	1 cut(s)	440
BstAPI	GCANNNNNTGC	1 cut(s)	422
BstAUI	TGTACA	1 cut(s)	1276
BstC8I	GCNNGC	1 cut(s)	771
BstDEI	CTNAG	4 cut(s)	175, 386, 699, 1193
BstDSI	CCRYGG	1 cut(s)	526
BstF5I	GGATG	5 cut(s)	100, 588, 739, 1034, 1279
BstFNI	CGCG	1 cut(s)	1161
BstH2I	RGCGCY	1 cut(s)	1193
BstHHI	GCGC	2 cut(s)	1161, 1192
BstKTI	GATC	8 cut(s)	286, 579, 860, 973, 1135, 1142, 1215, 1292
BstMAI	GTCTC	3 cut(s)	51, 70, 818
BstMBI	GATC	8 cut(s)	283, 576, 857, 970, 1132, 1139, 1212, 1289
BstMWI	GCNNNNNNNGC	2 cut(s)	422, 1226
BstNI	CCWGG	2 cut(s)	1054, 1175
BstNSI	RCATGY	1 cut(s)	710
BstSCI	CCNGG	3 cut(s)	860, 1052, 1173
BstUI	CGCG	1 cut(s)	1161
BstV1I	GCAGC	3 cut(s)	707, 1199, 1216
BstV2I	GAAGAC	1 cut(s)	92
BstX2I	RGATCY	1 cut(s)	857
BstYI	RGATCY	1 cut(s)	857
BstZ17I	GTATAC	1 cut(s)	565
BsuI	GTATCC	1 cut(s)	929
BtgI	CCRYGG	1 cut(s)	526
BtrI	CACGTC	1 cut(s)	1201
BtsCI	GGATG	5 cut(s)	100, 588, 739, 1034, 1279
BtsIMutI	CAGTG	2 cut(s)	955, 1045
Cac8I	GCNNGC	1 cut(s)	771
CciI	TCATGA	1 cut(s)	280
CfoI	GCGC	2 cut(s)	1161, 1192
Cfr13I	GGNCC	2 cut(s)	589, 1049
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	1277
CviAII	CATG	6 cut(s)	281, 527, 536, 641, 707, 740
CviQI	GTAC	1 cut(s)	1277
DdeI	CTNAG	4 cut(s)	175, 386, 699, 1193
DpnI	GATC	8 cut(s)	285, 578, 859, 972, 1134, 1141, 1214, 1291
DpnII	GATC	8 cut(s)	283, 576, 857, 970, 1132, 1139, 1212, 1289
DraI	TTTAAA	1 cut(s)	868
Eam1104I	CTCTTC	1 cut(s)	1140
EarI	CTCTTC	1 cut(s)	1140
EciI	GGCGGA	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	526
Eco32I	GATATC	1 cut(s)	533
Eco47I	GGWCC	2 cut(s)	589, 1049
Eco47III	AGCGCT	1 cut(s)	1191
Eco57I	CTGAAG	1 cut(s)	1067
Eco88I	CYCGRG	1 cut(s)	1265
EcoO109I	RGGNCCY	1 cut(s)	1049
EcoRII	CCWGG	2 cut(s)	1052, 1173
EcoRV	GATATC	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	526
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	526
Esp3I	CGTCTC	2 cut(s)	51, 70
FaeI	CATG	6 cut(s)	284, 530, 539, 644, 710, 743
FalI	AAGNNNNNCTT	6 cut(s)	1176, 1208, 1218, 1250, 1238, 1270
FaqI	GGGAC	2 cut(s)	230, 410
FatI	CATG	6 cut(s)	280, 526, 535, 640, 706, 739
FbaI	TGATCA	1 cut(s)	1132
FblI	GTMKAC	3 cut(s)	543, 556, 564
Fnu4HI	GCNGC	3 cut(s)	696, 1188, 1230
FokI	GGATG	5 cut(s)	87, 595, 746, 1041, 1286
Fsp4HI	GCNGC	3 cut(s)	696, 1188, 1230
FspBI	CTAG	1 cut(s)	1300
GlaI	GCGC	2 cut(s)	1160, 1191
GluI	GCNGC	3 cut(s)	696, 1188, 1230
HaeII	RGCGCY	1 cut(s)	1193
HapII	CCGG	1 cut(s)	861
HgaI	GACGC	1 cut(s)	60
HhaI	GCGC	2 cut(s)	1161, 1192
Hin1II	CATG	6 cut(s)	284, 530, 539, 644, 710, 743
Hin6I	GCGC	2 cut(s)	1159, 1190
HinP1I	GCGC	2 cut(s)	1159, 1190
HincII	GTYRAC	2 cut(s)	341, 850
HindII	GTYRAC	2 cut(s)	341, 850
HinfI	GANTC	7 cut(s)	155, 218, 308, 627, 826, 922, 1170
HpaII	CCGG	1 cut(s)	861
HphI	GGTGA	1 cut(s)	1142
Hpy166II	GTNNAC	6 cut(s)	341, 544, 557, 565, 589, 850
Hpy188I	TCNGA	8 cut(s)	236, 272, 288, 317, 649, 798, 1018, 1144
Hpy8I	GTNNAC	6 cut(s)	341, 544, 557, 565, 589, 850
Hpy99I	CGWCG	2 cut(s)	76, 1202
HpyAV	CCTTC	2 cut(s)	883, 1264
HpyCH4III	ACNGT	5 cut(s)	265, 508, 950, 1118, 1130
HpyCH4IV	ACGT	1 cut(s)	1200
HpyCH4V	TGCA	6 cut(s)	4, 607, 695, 739, 1008, 1232
HpyF10VI	GCNNNNNNNGC	2 cut(s)	422, 1226
HpyF3I	CTNAG	4 cut(s)	175, 386, 699, 1193
HpySE526I	ACGT	1 cut(s)	1200
Hsp92II	CATG	6 cut(s)	284, 530, 539, 644, 710, 743
HspAI	GCGC	2 cut(s)	1159, 1190
Ksp22I	TGATCA	1 cut(s)	1132
Kzo9I	GATC	8 cut(s)	283, 576, 857, 970, 1132, 1139, 1212, 1289
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	3 cut(s)	707, 1199, 1216
LweI	GCATC	4 cut(s)	133, 412, 722, 1019
MaeI	CTAG	1 cut(s)	1300
MaeII	ACGT	1 cut(s)	1200
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	8 cut(s)	285, 578, 859, 972, 1134, 1141, 1214, 1291
MbiI	CCGCTC	1 cut(s)	205
MboI	GATC	8 cut(s)	283, 576, 857, 970, 1132, 1139, 1212, 1289
MboII	GAAGA	7 cut(s)	97, 811, 1133, 1157, 1216, 1219, 1222
MflI	RGATCY	1 cut(s)	857
MlyI	GAGTC	3 cut(s)	212, 317, 820
MmeI	TCCRAC	1 cut(s)	28
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	893, 1080
MseI	TTAA	6 cut(s)	377, 441, 486, 665, 867, 1236
MspCI	CTTAAG	1 cut(s)	440
MspI	CCGG	1 cut(s)	861
MspR9I	CCNGG	3 cut(s)	862, 1054, 1175
MvaI	CCWGG	2 cut(s)	1054, 1175
MvnI	CGCG	1 cut(s)	1161
MwoI	GCNNNNNNNGC	2 cut(s)	422, 1226
NciI	CCSGG	1 cut(s)	862
NcoI	CCATGG	1 cut(s)	526
NdeII	GATC	8 cut(s)	283, 576, 857, 970, 1132, 1139, 1212, 1289
NlaIII	CATG	6 cut(s)	284, 530, 539, 644, 710, 743
NlaIV	GGNNCC	2 cut(s)	859, 1051
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	710
PagI	TCATGA	1 cut(s)	280
PdmI	GAANNNNTTC	2 cut(s)	893, 1080
PfeI	GAWTC	4 cut(s)	155, 627, 922, 1170
PflMI	CCANNNNNTGG	1 cut(s)	1180
PfoI	TCCNGGA	1 cut(s)	1173
PkrI	GCNGC	3 cut(s)	697, 1189, 1231
PleI	GAGTC	3 cut(s)	212, 316, 820
PpsI	GAGTC	3 cut(s)	212, 316, 820
PpuMI	RGGWCCY	1 cut(s)	1049
Psp5II	RGGWCCY	1 cut(s)	1049
Psp6I	CCWGG	2 cut(s)	1052, 1173
PspGI	CCWGG	2 cut(s)	1052, 1173
PspN4I	GGNNCC	2 cut(s)	859, 1051
PspPI	GGNCC	2 cut(s)	589, 1049
PspPPI	RGGWCCY	1 cut(s)	1049
PsuI	RGATCY	1 cut(s)	857
RsaI	GTAC	1 cut(s)	1278
RsaNI	GTAC	1 cut(s)	1277
SaqAI	TTAA	6 cut(s)	377, 441, 486, 665, 867, 1236
SatI	GCNGC	3 cut(s)	696, 1188, 1230
Sau3AI	GATC	8 cut(s)	283, 576, 857, 970, 1132, 1139, 1212, 1289
Sau96I	GGNCC	2 cut(s)	589, 1049
SchI	GAGTC	3 cut(s)	212, 317, 820
ScrFI	CCNGG	3 cut(s)	862, 1054, 1175
SfaNI	GCATC	4 cut(s)	133, 412, 722, 1019
SinI	GGWCC	2 cut(s)	589, 1049
SmlI	CTYRAG	2 cut(s)	206, 440
SmoI	CTYRAG	2 cut(s)	206, 440
SsiI	CCGC	2 cut(s)	104, 203
SspMI	CTAG	1 cut(s)	1300
StyD4I	CCNGG	3 cut(s)	860, 1052, 1173
StyI	CCWWGG	1 cut(s)	526
TaaI	ACNGT	5 cut(s)	265, 508, 950, 1118, 1130
TaiI	ACGT	1 cut(s)	1203
TaqI	TCGA	6 cut(s)	74, 402, 570, 689, 973, 1215
TaqII	GACCGA	1 cut(s)	561
TatI	WGTACW	1 cut(s)	1276
TfiI	GAWTC	4 cut(s)	155, 627, 922, 1170
Tru1I	TTAA	6 cut(s)	377, 441, 486, 665, 867, 1236
Tru9I	TTAA	6 cut(s)	377, 441, 486, 665, 867, 1236
TscAI	CASTG	2 cut(s)	955, 1045
TseI	GCWGC	3 cut(s)	695, 1187, 1229
TspDTI	ATGAA	7 cut(s)	89, 147, 269, 309, 483, 516, 619
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	955, 1045
Van91I	CCANNNNNTGG	1 cut(s)	1180
Vha464I	CTTAAG	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	589, 1049
XapI	RAATTY	4 cut(s)	93, 471, 667, 792
XceI	RCATGY	1 cut(s)	710
XcmI	CCANNNNNNNNNTGG	1 cut(s)	533
XmiI	GTMKAC	3 cut(s)	543, 556, 564
XmnI	GAANNNNTTC	2 cut(s)	893, 1080
XspI	CTAG	1 cut(s)	1300
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.