Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011895

Physical Location & Seq

Genomic Coordinates Reverse (-)

20767222 .. 20768768

Gene Structure 1547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18177

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTCGAACTTGGGATTCAAAAAGTTCCGTGAGTCGTTCAAGAAACTTGGAGGGAGTAGTAGGAAGAGCATGAAAATGGTTCTTGCAGGAGTTCGTGATCCGAAAGATCAAAAGCTTGTTGACTCTTTTCGAGAACTGCTGTTCCTCCAGGGTCAGCTTCCTTCACAGCACCAGGATTATCATACGCTCTTGCGGTTTCTTCGAATGAGGGACTTTGATCTTGCTAAAGCAAAAGAGGCCTTCTTTACTTATCTCAAGTGGCGTGAGGATTATAGGGTTGACGCAATTCCAAAAGTAAAAATCGAACTAAATCTTCTACTTGAAATAGAGTTCAAGTTTGAGGAATATGAGGCAGTTAAGAAGTGCTATCCTCATGGATTCCACGGGGTAGACCGATATGGTAGACCAGTATACATCGAAAGGATTGGGATGGTAGACCTTAACAAGCTACTGCAAGTAACTACACTTGAAAGATTTACAAAGTATCATGTGTCAGAACAAGAGAAAACATTGAATGTGAGATACCCTACTTGCTCCATTGCAGCTAAGAAGCATGTAGCATCTACAACAAGTATCTTAGATGTGCATGGAGTGGGATTGGCAAATTTCTCGAAGCCTGCTCGATATCTCTTTATGGAAATTCAGAAGATTGATAGCAATTACTACCCAGAGACTCTAAATCGCCTGTTTATTGTGAATGCTGGAAATGGGTTTAAGATGCTGTGGAAAGCAGTGAAAGCTTTCCTTGATGCACGAACATTAGCAAAGATTCGAGTATGTTCTCTTCTCCATGAATTGTCCTATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

269

Amino Acids

31.45

Weight (kDa)

9.61

Isoelectric Point (pI)

28.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	123 - 261	7.8e-22	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47510 AT5G47510 AT5G47510 AT5G47510
fragaria_vesca	FvH4_5g18760 FvH4_5g18760
malus_domestica	MD00G1043800.v1.1
prunus_persica	Prupe.5G071000_v2.0.a1
pyrus_communis	pycom976g00060
rosa_chinensis	RchiOBHm_Chr7g0203101
rosa_laevigata	RLG00000003552
rosa_multiflora	Rmu_sc0004999.1_g000010
rosa_roxburghii	Rroxscaffold_3G00254070
rosa_rugosa	Rorug07G0074600
rosa_samantha	Rh7AG203400 Rh7BG203000 Rh7CG214100 Rh7DG210100
rosa_wichuraiana	Rw7G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	4 cut(s)	390, 403, 411, 435
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	92
AcsI	RAATTY	2 cut(s)	604, 639
AgsI	TTSAA	6 cut(s)	19, 40, 323, 334, 470, 514
AjnI	CCWGG	2 cut(s)	147, 171
AloI	GAACNNNNNNTCC	2 cut(s)	126, 158
AluBI	AGCT	5 cut(s)	115, 157, 448, 545, 740
AluI	AGCT	5 cut(s)	115, 157, 448, 545, 740
Alw26I	GTCTC	1 cut(s)	665
AlwI	GGATC	1 cut(s)	92
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	604, 639
Asp700I	GAANNNNTTC	1 cut(s)	740
AsuII	TTCGAA	1 cut(s)	202
BarI	GAAGNNNNNNTAC	2 cut(s)	768, 800
BbvI	GCAGC	1 cut(s)	554
BccI	CCATC	1 cut(s)	424
BcgI	CGANNNNNNTGC	2 cut(s)	591, 625
BciT130I	CCWGG	2 cut(s)	149, 173
BcoDI	GTCTC	1 cut(s)	665
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
Bme1390I	CCNGG	2 cut(s)	149, 173
BmrFI	CCNGG	2 cut(s)	149, 173
BmsI	GCATC	3 cut(s)	569, 708, 739
BpmI	CTGGAG	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	148, 382
Bse1I	ACTGG	1 cut(s)	407
Bse3DI	GCAATG	1 cut(s)	537
BseBI	CCWGG	2 cut(s)	149, 173
BseDI	CCNNGG	2 cut(s)	148, 382
BseGI	GGATG	1 cut(s)	435
BseMI	GCAATG	1 cut(s)	537
BseNI	ACTGG	1 cut(s)	407
BseXI	GCAGC	1 cut(s)	554
BshFI	GGCC	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	97, 106, 217
BspACI	CCGC	1 cut(s)	193
BspANI	GGCC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	92
BspQI	GCTCTTC	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	537
BsrI	ACTGG	1 cut(s)	407
BssECI	CCNNGG	2 cut(s)	148, 382
BssMI	GATC	3 cut(s)	97, 106, 217
BssNAI	GTATAC	1 cut(s)	412
Bst1107I	GTATAC	1 cut(s)	412
Bst2UI	CCWGG	2 cut(s)	149, 173
Bst6I	CTCTTC	2 cut(s)	59, 789
BstBI	TTCGAA	1 cut(s)	202
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	2 cut(s)	546, 577
BstDSI	CCRYGG	1 cut(s)	382
BstF5I	GGATG	1 cut(s)	435
BstKTI	GATC	3 cut(s)	100, 109, 220
BstMAI	GTCTC	1 cut(s)	665
BstMBI	GATC	3 cut(s)	97, 106, 217
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 737
BstNI	CCWGG	2 cut(s)	149, 173
BstNSI	RCATGY	1 cut(s)	557
BstSCI	CCNGG	2 cut(s)	147, 171
BstV1I	GCAGC	1 cut(s)	554
BstZ17I	GTATAC	1 cut(s)	412
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	382
BtsCI	GGATG	1 cut(s)	435
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	1 cut(s)	738
Cac8I	GCNNGC	1 cut(s)	618
CseI	GACGC	1 cut(s)	290
CviAII	CATG	6 cut(s)	70, 374, 488, 554, 587, 791
CviJI	RGCY	7 cut(s)	115, 157, 239, 448, 545, 616, 740
CviKI_1	RGCY	7 cut(s)	115, 157, 239, 448, 545, 616, 740
DdeI	CTNAG	2 cut(s)	546, 577
DpnI	GATC	3 cut(s)	99, 108, 219
DpnII	GATC	3 cut(s)	97, 106, 217
Eam1104I	CTCTTC	2 cut(s)	59, 789
EarI	CTCTTC	2 cut(s)	59, 789
Eco147I	AGGCCT	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	626
EcoRII	CCWGG	2 cut(s)	147, 171
EcoRV	GATATC	1 cut(s)	626
FaeI	CATG	6 cut(s)	73, 377, 491, 557, 590, 794
FalI	AAGNNNNNCTT	2 cut(s)	729, 761
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	6 cut(s)	69, 373, 487, 553, 586, 790
FblI	GTMKAC	4 cut(s)	390, 403, 411, 435
Fnu4HI	GCNGC	1 cut(s)	543
FokI	GGATG	1 cut(s)	442
Fsp4HI	GCNGC	1 cut(s)	543
GluI	GCNGC	1 cut(s)	543
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	239
HgaI	GACGC	1 cut(s)	290
Hin1II	CATG	6 cut(s)	73, 377, 491, 557, 590, 794
HincII	GTYRAC	2 cut(s)	121, 280
HindII	GTYRAC	2 cut(s)	121, 280
HindIII	AAGCTT	2 cut(s)	113, 738
HinfI	GANTC	6 cut(s)	15, 32, 122, 378, 673, 769
Hpy166II	GTNNAC	6 cut(s)	121, 280, 391, 404, 412, 436
Hpy188I	TCNGA	3 cut(s)	102, 496, 645
Hpy188III	TCNNGA	4 cut(s)	40, 95, 131, 610
Hpy8I	GTNNAC	6 cut(s)	121, 280, 391, 404, 412, 436
HpyAV	CCTTC	2 cut(s)	171, 250
HpyCH4V	TGCA	5 cut(s)	86, 454, 542, 586, 752
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 737
HpyF3I	CTNAG	2 cut(s)	546, 577
Hsp92II	CATG	6 cut(s)	73, 377, 491, 557, 590, 794
Kzo9I	GATC	3 cut(s)	97, 106, 217
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	1 cut(s)	554
LweI	GCATC	3 cut(s)	569, 708, 739
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	3 cut(s)	99, 108, 219
MboI	GATC	3 cut(s)	97, 106, 217
MboII	GAAGA	5 cut(s)	76, 191, 305, 658, 776
MluCI	AATT	6 cut(s)	285, 604, 639, 658, 794, 805
MlyI	GAGTC	3 cut(s)	41, 116, 667
MnlI	CCTC	8 cut(s)	44, 155, 201, 229, 259, 334, 343, 381
MroXI	GAANNNNTTC	1 cut(s)	740
MseI	TTAA	4 cut(s)	357, 441, 714, 808
MslI	CAYNNNNRTG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	149, 173
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	2 cut(s)	149, 173
MwoI	GCNNNNNNNGC	2 cut(s)	236, 737
NdeII	GATC	3 cut(s)	97, 106, 217
NlaIII	CATG	6 cut(s)	73, 377, 491, 557, 590, 794
NspI	RCATGY	1 cut(s)	557
NspV	TTCGAA	1 cut(s)	202
PceI	AGGCCT	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	59
PctI	GAATGC	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	740
PfeI	GAWTC	3 cut(s)	15, 378, 769
PkrI	GCNGC	1 cut(s)	544
PleI	GAGTC	3 cut(s)	40, 116, 667
PpsI	GAGTC	3 cut(s)	40, 116, 667
Psp6I	CCWGG	2 cut(s)	147, 171
PspGI	CCWGG	2 cut(s)	147, 171
RseI	CAYNNNNRTG	1 cut(s)	74
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	4 cut(s)	357, 441, 714, 808
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	3 cut(s)	97, 106, 217
SchI	GAGTC	3 cut(s)	41, 116, 667
ScrFI	CCNGG	2 cut(s)	149, 173
SetI	ASST	6 cut(s)	117, 159, 441, 450, 547, 742
SfaNI	GCATC	3 cut(s)	569, 708, 739
SfuI	TTCGAA	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	6 cut(s)	285, 604, 639, 658, 794, 805
SseBI	AGGCCT	1 cut(s)	239
SsiI	CCGC	1 cut(s)	193
StuI	AGGCCT	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	147, 171
TaqI	TCGA	8 cut(s)	5, 130, 202, 303, 417, 611, 622, 772
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	6 cut(s)	285, 604, 639, 658, 794, 805
TfiI	GAWTC	3 cut(s)	15, 378, 769
Tru1I	TTAA	4 cut(s)	357, 441, 714, 808
Tru9I	TTAA	4 cut(s)	357, 441, 714, 808
TscAI	CASTG	1 cut(s)	738
TseI	GCWGC	1 cut(s)	542
TspDTI	ATGAA	2 cut(s)	86, 807
TspGWI	ACGGA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	738
XapI	RAATTY	2 cut(s)	604, 639
XceI	RCATGY	1 cut(s)	557
XmiI	GTMKAC	4 cut(s)	390, 403, 411, 435
XmnI	GAANNNNTTC	1 cut(s)	740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.