Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011895

Physical Location & Seq

Genomic Coordinates Forward (+)

48226783 .. 48231022

Gene Structure 4240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00254070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGCTTACATCAAAACGAGAATCACTAGATAGGGATATAGTGATTTCGAGAGGCAGTGGAGATGGAGAGGATGATAAACCCTCATCGAGTTTAGGGAAACCTAAAACTATTCATCCTTCCATTGAAACCCATTGGCATTTCCCTGCGCCTCAAGATAGCAAAAAGCCTTCATCTTCAATGTCGAACTTGGGATTCAAAAAGTTCCGTGAGTCGTTCAAGAAACTTGGAGGGAGTGGTAGCAAGAGCATGAAAATGGTTCTTGCAGGAGTTCGTGATCCGAAAGATCAAAAGCTTGTTGACTCTTTTCGAGAACTGCTGTTCCTCGAGGGTCAGCTTCCTGCACAGCACCAGGATTATCATACACTCTTGCGGTTTCTTCGGATGAGGGACTTTGATCTTGCTAAAGCAAAAGAGGCCTTCTTTACTTATCTCAAGTGGCGTGAGGATTATAGGGTTGACGCAATTCCAAAAGAGTTCAAGTTTGAGGAATATGAGGCAGTTAAGAAGTGCTATCCTCATGGATTCCACGGGGTAGACCGATATGGTAGACCAGTATACATCGAAAGGATTGGGATGGTAGACCTTAACAAGCTACTGCAAGTAACTACACTTGAAAGATTTACAAAGTATCATGTGTCAGAACAAGAGAAAACATTGAATGTGAGATACCCTACTTGCTCCATTGCAGCTAAGAAGCATGTAGCATCTACAACAAGTATCTTAGATGTGCATGGAGTGGGATTGGCAAATTTCTCGAAGCCTGCTCGATATCTCTTTATGGAAATTCAGAAGATTGATAGCAATTACTACCCAGAGACTCTAAATCGCCTGTTTATTGTGAATGCTGGAAATGGGTTTAAGATGCTGTGGAAAGCAGTGGCTGCTTTCCTTGATGCACGAACATTAGCAAAGATTCGAGTGCTGGGATACAATTATCAGAGTGACTTGCTTGAAGTAATTGATCTAAGTAATTTGCCGACATTTCTGGGTGGAAGCTGCACTTGTTCTGAATATGGGGGCTGCCTTTTAAGTGACAGAGGACCCTGGAACAATCCGGAGATTACAGATGTGCTTCAGGCAATCTCTGCAGGCAATGTGGTAACCGGTAATGAAGAATATAGTAATCAGGCTTCAGAAGAGCCGCCGATGCAAAATAGGAAAATCCAAGTTTTAGAAGCAGCACTTCAAGACGCCAAGAAAAAAATTGAAGCATTAGAAGCTGCACTTGAGGACACCAAGAATGTCTTGAAAGAACTTGTGCGGCATGTAGAAGAGTTGAGAACAACTTCTTGGGAAGTACATTGCACTTCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

438

Amino Acids

49.75

Weight (kDa)

8.49

Isoelectric Point (pI)

36.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	171 - 331	5.2e-26	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47510 AT5G47510 AT5G47510 AT5G47510
fragaria_vesca	FvH4_5g18760 FvH4_5g18760
malus_domestica	MD00G1043800.v1.1
prunus_persica	Prupe.5G071000_v2.0.a1
pyrus_communis	pycom976g00060
rosa_chinensis	RchiOBHm_Chr7g0203101
rosa_laevigata	RLG00000003552
rosa_multiflora	Rmu_sc0004999.1_g000010
rosa_roxburghii	Rroxscaffold_3G00254070
rosa_rugosa	Rorug07G0074600
rosa_samantha	Rh7AG203400 Rh7BG203000 Rh7CG214100 Rh7DG210100
rosa_wichuraiana	Rw7G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	323
AccI	GTMKAC	4 cut(s)	534, 547, 555, 579
AccIII	TCCGGA	1 cut(s)	1054
AciI	CCGC	3 cut(s)	370, 1142, 1261
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	748, 783
AcuI	CTGAAG	2 cut(s)	1058, 1116
AcyI	GRCGYC	1 cut(s)	1191
AfaI	GTAC	1 cut(s)	1299
AgeI	ACCGGT	1 cut(s)	1103
AjnI	CCWGG	2 cut(s)	348, 1043
AjuI	GAANNNNNNNTTGG	2 cut(s)	1273, 1305
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	6 cut(s)	292, 334, 592, 689, 996, 1220
AluI	AGCT	6 cut(s)	292, 334, 592, 689, 996, 1220
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	881
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	1054
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	6 cut(s)	686, 881, 996, 1020, 1178, 1220
ApoI	RAATTY	2 cut(s)	748, 783
AsiGI	ACCGGT	1 cut(s)	1103
Asp700I	GAANNNNTTC	1 cut(s)	1285
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	1040
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	1040
BarI	GAAGNNNNNNTAC	2 cut(s)	1114, 1146
BbvI	GCAGC	6 cut(s)	698, 868, 983, 1007, 1190, 1207
BccI	CCATC	2 cut(s)	56, 568
BcgI	CGANNNNNNTGC	2 cut(s)	735, 769
BciT130I	CCWGG	2 cut(s)	350, 1045
BciVI	GTATCC	1 cut(s)	920
BcoDI	GTCTC	1 cut(s)	809
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	1086
BfuI	GTATCC	1 cut(s)	920
BisI	GCNGC	8 cut(s)	687, 882, 997, 1021, 1142, 1179, 1221, 1262
BlsI	GCNGC	8 cut(s)	688, 883, 998, 1022, 1143, 1180, 1222, 1263
Bme1390I	CCNGG	2 cut(s)	350, 1045
Bme18I	GGWCC	1 cut(s)	1040
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	1040
BmiI	GGNNCC	1 cut(s)	1042
BmrFI	CCNGG	2 cut(s)	350, 1045
BmsI	GCATC	4 cut(s)	713, 852, 883, 1137
BpuEI	CTTGAG	3 cut(s)	135, 416, 1247
BsaHI	GRCGYC	1 cut(s)	1191
BsaJI	CCNNGG	2 cut(s)	526, 1043
BsaWI	WCCGGW	2 cut(s)	1054, 1103
Bse118I	RCCGGY	1 cut(s)	1103
Bse1I	ACTGG	1 cut(s)	551
Bse3DI	GCAATG	3 cut(s)	681, 1099, 1300
BseAI	TCCGGA	1 cut(s)	1054
BseBI	CCWGG	2 cut(s)	350, 1045
BseDI	CCNNGG	2 cut(s)	526, 1043
BseGI	GGATG	4 cut(s)	76, 112, 387, 579
BseMI	GCAATG	3 cut(s)	681, 1099, 1300
BseNI	ACTGG	1 cut(s)	551
BseXI	GCAGC	6 cut(s)	698, 868, 983, 1007, 1190, 1207
BseYI	CCCAGC	1 cut(s)	922
BsgI	GTGCAG	3 cut(s)	324, 982, 1206
BshFI	GGCC	1 cut(s)	416
BshTI	ACCGGT	1 cut(s)	1103
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	1055, 1104
BslFI	GGGAC	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	809
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	847
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	323
Bsp13I	TCCGGA	1 cut(s)	1054
Bsp143I	GATC	4 cut(s)	274, 283, 394, 961
BspACI	CCGC	3 cut(s)	370, 1142, 1261
BspANI	GGCC	1 cut(s)	416
BspEI	TCCGGA	1 cut(s)	1054
BspLI	GGNNCC	1 cut(s)	1042
BspMAI	CTGCAG	1 cut(s)	1090
BspPI	GGATC	1 cut(s)	269
BspQI	GCTCTTC	1 cut(s)	1131
BsrDI	GCAATG	3 cut(s)	681, 1099, 1300
BsrFI	RCCGGY	1 cut(s)	1103
BsrI	ACTGG	1 cut(s)	551
BssAI	RCCGGY	1 cut(s)	1103
BssECI	CCNNGG	2 cut(s)	526, 1043
BssMI	GATC	4 cut(s)	274, 283, 394, 961
BssNAI	GTATAC	1 cut(s)	556
BssNI	GRCGYC	1 cut(s)	1191
Bst1107I	GTATAC	1 cut(s)	556
Bst2UI	CCWGG	2 cut(s)	350, 1045
Bst6I	CTCTTC	2 cut(s)	1131, 1266
BstACI	GRCGYC	1 cut(s)	1191
BstAPI	GCANNNNNTGC	2 cut(s)	881, 1085
BstC8I	GCNNGC	2 cut(s)	762, 1090
BstDEI	CTNAG	3 cut(s)	690, 721, 965
BstDSI	CCRYGG	1 cut(s)	526
BstEII	GGTNACC	1 cut(s)	1099
BstF5I	GGATG	4 cut(s)	76, 112, 387, 579
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	4 cut(s)	277, 286, 397, 964
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	4 cut(s)	274, 283, 394, 961
BstMWI	GCNNNNNNNGC	5 cut(s)	413, 881, 1085, 1147, 1217
BstNI	CCWGG	2 cut(s)	350, 1045
BstNSI	RCATGY	2 cut(s)	701, 1268
BstPI	GGTNACC	1 cut(s)	1099
BstSCI	CCNGG	2 cut(s)	348, 1043
BstSFI	CTRYAG	1 cut(s)	1086
BstV1I	GCAGC	6 cut(s)	698, 868, 983, 1007, 1190, 1207
BstZ17I	GTATAC	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	920
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	4 cut(s)	76, 112, 387, 579
BtsI	GCAGTG	2 cut(s)	61, 882
BtsIMutI	CAGTG	2 cut(s)	61, 882
Cac8I	GCNNGC	2 cut(s)	762, 1090
CaiI	CAGNNNCTG	1 cut(s)	881
CfoI	GCGC	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	1103
Cfr13I	GGNCC	1 cut(s)	1040
CseI	GACGC	2 cut(s)	467, 1199
Csp6I	GTAC	1 cut(s)	1298
CspAI	ACCGGT	1 cut(s)	1103
CviAII	CATG	6 cut(s)	247, 518, 632, 698, 731, 1265
CviQI	GTAC	1 cut(s)	1298
DdeI	CTNAG	3 cut(s)	690, 721, 965
DpnI	GATC	4 cut(s)	276, 285, 396, 963
DpnII	GATC	4 cut(s)	274, 283, 394, 961
Eam1104I	CTCTTC	2 cut(s)	1131, 1266
EarI	CTCTTC	2 cut(s)	1131, 1266
Eco147I	AGGCCT	1 cut(s)	416
Eco32I	GATATC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	1040
Eco57I	CTGAAG	2 cut(s)	1058, 1116
Eco88I	CYCGRG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	1099
EcoO109I	RGGNCCY	1 cut(s)	1040
EcoO65I	GGTNACC	1 cut(s)	1099
EcoRII	CCWGG	2 cut(s)	348, 1043
EcoRV	GATATC	1 cut(s)	770
FaeI	CATG	6 cut(s)	250, 521, 635, 701, 734, 1268
FalI	AAGNNNNNCTT	8 cut(s)	985, 1017, 1167, 1199, 1209, 1241, 1229, 1261
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	6 cut(s)	246, 517, 631, 697, 730, 1264
FblI	GTMKAC	4 cut(s)	534, 547, 555, 579
Fnu4HI	GCNGC	8 cut(s)	687, 882, 997, 1021, 1142, 1179, 1221, 1262
FokI	GGATG	4 cut(s)	83, 99, 394, 586
Fsp4HI	GCNGC	8 cut(s)	687, 882, 997, 1021, 1142, 1179, 1221, 1262
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	8 cut(s)	687, 882, 997, 1021, 1142, 1179, 1221, 1262
GsaI	CCCAGC	1 cut(s)	926
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	2 cut(s)	1055, 1104
HgaI	GACGC	2 cut(s)	467, 1199
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	1191
Hin1II	CATG	6 cut(s)	250, 521, 635, 701, 734, 1268
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	2 cut(s)	298, 457
HindII	GTYRAC	2 cut(s)	298, 457
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	7 cut(s)	20, 192, 209, 299, 522, 817, 913
HpaII	CCGG	2 cut(s)	1055, 1104
Hpy166II	GTNNAC	6 cut(s)	298, 457, 535, 548, 556, 580
Hpy188I	TCNGA	7 cut(s)	279, 381, 640, 789, 939, 1009, 1135
Hpy188III	TCNNGA	9 cut(s)	48, 152, 217, 272, 308, 754, 1055, 1187, 1246
Hpy8I	GTNNAC	6 cut(s)	298, 457, 535, 548, 556, 580
HpyAV	CCTTC	3 cut(s)	126, 177, 427
HpyF10VI	GCNNNNNNNGC	5 cut(s)	413, 881, 1085, 1147, 1217
HpyF3I	CTNAG	3 cut(s)	690, 721, 965
Hsp92I	GRCGYC	1 cut(s)	1191
Hsp92II	CATG	6 cut(s)	250, 521, 635, 701, 734, 1268
HspAI	GCGC	1 cut(s)	146
Kpn2I	TCCGGA	1 cut(s)	1054
Kzo9I	GATC	4 cut(s)	274, 283, 394, 961
LguI	GCTCTTC	1 cut(s)	1131
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	6 cut(s)	698, 868, 983, 1007, 1190, 1207
LweI	GCATC	4 cut(s)	713, 852, 883, 1137
MaeI	CTAG	1 cut(s)	26
MaeIII	GTNAC	4 cut(s)	601, 941, 1031, 1099
MalI	GATC	4 cut(s)	276, 285, 396, 963
MboI	GATC	4 cut(s)	274, 283, 394, 961
MboII	GAAGA	6 cut(s)	165, 368, 802, 1124, 1148, 1283
MluCI	AATT	8 cut(s)	462, 748, 783, 802, 931, 957, 970, 1203
MlyI	GAGTC	3 cut(s)	218, 293, 811
MroI	TCCGGA	1 cut(s)	1054
MroXI	GAANNNNTTC	1 cut(s)	1285
MseI	TTAA	4 cut(s)	501, 585, 858, 1028
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	2 cut(s)	1055, 1104
MspR9I	CCNGG	2 cut(s)	350, 1045
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	2 cut(s)	350, 1045
MwoI	GCNNNNNNNGC	5 cut(s)	413, 881, 1085, 1147, 1217
NdeII	GATC	4 cut(s)	274, 283, 394, 961
NlaIII	CATG	6 cut(s)	250, 521, 635, 701, 734, 1268
NlaIV	GGNNCC	1 cut(s)	1042
NmuCI	GTSAC	2 cut(s)	941, 1031
NspI	RCATGY	2 cut(s)	701, 1268
PaeR7I	CTCGAG	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	416
PciSI	GCTCTTC	1 cut(s)	1131
PctI	GAATGC	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	1285
PfeI	GAWTC	4 cut(s)	20, 192, 522, 913
PinAI	ACCGGT	1 cut(s)	1103
PkrI	GCNGC	8 cut(s)	688, 883, 998, 1022, 1143, 1180, 1222, 1263
PleI	GAGTC	3 cut(s)	217, 293, 811
PpsI	GAGTC	3 cut(s)	217, 293, 811
PpuMI	RGGWCCY	1 cut(s)	1040
Psp5II	RGGWCCY	1 cut(s)	1040
Psp6I	CCWGG	2 cut(s)	348, 1043
PspEI	GGTNACC	1 cut(s)	1099
PspFI	CCCAGC	1 cut(s)	922
PspGI	CCWGG	2 cut(s)	348, 1043
PspN4I	GGNNCC	1 cut(s)	1042
PspPI	GGNCC	1 cut(s)	1040
PspPPI	RGGWCCY	1 cut(s)	1040
PspXI	VCTCGAGB	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	1090
PstNI	CAGNNNCTG	1 cut(s)	881
RsaI	GTAC	1 cut(s)	1299
RsaNI	GTAC	1 cut(s)	1298
RseI	CAYNNNNRTG	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	1131
SaqAI	TTAA	4 cut(s)	501, 585, 858, 1028
SatI	GCNGC	8 cut(s)	687, 882, 997, 1021, 1142, 1179, 1221, 1262
Sau3AI	GATC	4 cut(s)	274, 283, 394, 961
Sau96I	GGNCC	1 cut(s)	1040
SchI	GAGTC	3 cut(s)	218, 293, 811
ScrFI	CCNGG	2 cut(s)	350, 1045
SetI	ASST	8 cut(s)	103, 294, 336, 585, 594, 691, 998, 1222
SfaNI	GCATC	4 cut(s)	713, 852, 883, 1137
SfcI	CTRYAG	1 cut(s)	1086
Sfr274I	CTCGAG	1 cut(s)	323
SinI	GGWCC	1 cut(s)	1040
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	4 cut(s)	150, 323, 431, 1226
SmoI	CTYRAG	4 cut(s)	150, 323, 431, 1226
Sse9I	AATT	8 cut(s)	462, 748, 783, 802, 931, 957, 970, 1203
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	3 cut(s)	370, 1142, 1261
SspMI	CTAG	1 cut(s)	26
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	348, 1043
TaqI	TCGA	9 cut(s)	47, 86, 182, 307, 324, 561, 755, 766, 916
TaqII	GACCGA	1 cut(s)	552
TasI	AATT	8 cut(s)	462, 748, 783, 802, 931, 957, 970, 1203
TatI	WGTACW	1 cut(s)	1297
TauI	GCSGC	2 cut(s)	1144, 1264
TfiI	GAWTC	4 cut(s)	20, 192, 522, 913
Tru1I	TTAA	4 cut(s)	501, 585, 858, 1028
Tru9I	TTAA	4 cut(s)	501, 585, 858, 1028
TscAI	CASTG	2 cut(s)	61, 882
TseFI	GTSAC	2 cut(s)	941, 1031
TseI	GCWGC	6 cut(s)	686, 881, 996, 1020, 1178, 1220
Tsp45I	GTSAC	2 cut(s)	941, 1031
TspDTI	ATGAA	4 cut(s)	101, 159, 263, 1125
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	61, 882
VpaK11BI	GGWCC	1 cut(s)	1040
XapI	RAATTY	2 cut(s)	748, 783
XceI	RCATGY	2 cut(s)	701, 1268
XhoI	CTCGAG	1 cut(s)	323
XmiI	GTMKAC	4 cut(s)	534, 547, 555, 579
XmnI	GAANNNNTTC	1 cut(s)	1285
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.