Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0011895

Physical Location & Seq

Genomic Coordinates Reverse (-)

10781385 .. 10784986

Gene Structure 3602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGCTTACATCAAAACTACATAGGGATATAGTGATTCAGAGAGGTGGTGGAGATGGAGCTGAAGATGAACCCTCATCAAGTTTAGGTAAACCCAAAACTATCCATCCTCCCATTGAGAGCCATTGGCATTTCCCTGTGCCTCAAGAAAGAAAAAAGCCTTCATCTTCAATGTCGAACTTGGGATTTAAAAAGTTTCGTGAGTCGTTCAAGAAACTTGGTGGGAGTAGTAGCAAGAGCATGAAAATGGTTCTTGCTGGAGTTCGTGATCCAAAAGATCAGAAAATTGTTGAGTCTTTTCGAGAACTGTTGTTTCTCGAGGGTCAGCTTCCTCCACAGCACCAAGATTATCATACACTCCTGCGGTTTCTTCGAATGAGGGACTTTGATCTTGCTAAAGCAAAAGAAGCCTTCTTGACTTATCTGAAGTGGCGTGAGGATTATAAGGTCGATGCAATTCTAAAGGAGTTTAAATTTGAGGAGTATGAATCAGTGAAGAAATGCTATCCTCATGGATTCCATGGCGTAGACCGATATGGTAGACCAGTATACATCGAAAGGATTGGGATGGTAGACCTTAACAAGCTACTGCAAGTGACTACACTTGAAAGGTTTACAAGGTATCATGTCTCAGAACAAGAGAAAACACTGAATGTGAGATATCCTACATGCTCCATTGCAGCTAAGAAGCATGTAGCATCTACAACAAGTATCTTAGATGTACATGGAGTGGGATTGGCGAATTTCTCGAAGCCTGCTCGGTATCTGTTTATGGAAATTCAGAAGATTGATAGCAATTACTACCCAGAGACTCTAAATCGCCTGTTTATTGTGAATGCTGGAAATGGGTTTAAGATGCTGTGGAAAGCAGTGAAAGCTTTCCTTGATGCACGGACACTAGCAAAGATTCAAGTGCTGGGATACAATTATCAGAGTGACTTGCTTGAAGTTATTGATCAAAGCAATTTGCCGACTTTTCTGGGTGGAAGCTGTACTTGTTCTGACTATGGGGGTTGCCTTTTAAGTGACAAAGGACCCTGGAACAATCCAGAGATCACAAATGTGCTTCAGGCAATATCTGCAGGCAATGAGGTAAACGGTAATGAAGAATACAGTAATGATGCTTCAGAAGAGGCTGCAGTGCAAAATAGGAAAATCCAGGCTTTGGAAGCAGCACTTCGAGACGCCAAGAAAAAAATTGAAGCATTAGAAGCTGCACTTGAGGACACCAAGAATGTCTTGAAAGAACTTGTGCAGCATGTAGAAGATTTGAGATCAACCTCTTGGGAAGTACATCCCATTTCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

436

Amino Acids

49.4

Weight (kDa)

8.35

Isoelectric Point (pI)

37.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	168 - 328	1.3e-27	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47510 AT5G47510 AT5G47510 AT5G47510
fragaria_vesca	FvH4_5g18760 FvH4_5g18760
malus_domestica	MD00G1043800.v1.1
prunus_persica	Prupe.5G071000_v2.0.a1
pyrus_communis	pycom976g00060
rosa_chinensis	RchiOBHm_Chr7g0203101
rosa_laevigata	RLG00000003552
rosa_multiflora	Rmu_sc0004999.1_g000010
rosa_roxburghii	Rroxscaffold_3G00254070
rosa_rugosa	Rorug07G0074600
rosa_samantha	Rh7AG203400 Rh7BG203000 Rh7CG214100 Rh7DG210100
rosa_wichuraiana	Rw7G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	441
AccB7I	CCANNNNNTGG	1 cut(s)	1162
AccI	GTMKAC	4 cut(s)	525, 538, 546, 570
AciI	CCGC	1 cut(s)	361
AclWI	GGATC	1 cut(s)	260
AcsI	RAATTY	3 cut(s)	470, 739, 774
AcuI	CTGAAG	4 cut(s)	81, 443, 1049, 1107
AcyI	GRCGYC	1 cut(s)	1182
AfaI	GTAC	3 cut(s)	720, 991, 1290
AfiI	CCNNNNNNNGG	1 cut(s)	1162
AgsI	TTSAA	8 cut(s)	168, 208, 605, 908, 944, 1199, 1240, 1302
AjnI	CCWGG	2 cut(s)	1034, 1155
AleI	CACNNNNGTG	1 cut(s)	1058
AluBI	AGCT	7 cut(s)	59, 325, 583, 680, 875, 987, 1211
AluI	AGCT	7 cut(s)	59, 325, 583, 680, 875, 987, 1211
Alw26I	GTCTC	3 cut(s)	631, 800, 1173
AlwI	GGATC	1 cut(s)	260
Ama87I	CYCGRG	1 cut(s)	314
ApeKI	GCWGC	5 cut(s)	677, 1133, 1169, 1211, 1252
ApoI	RAATTY	3 cut(s)	470, 739, 774
Asp700I	GAANNNNTTC	1 cut(s)	875
AspS9I	GGNCC	1 cut(s)	1031
AsuII	TTCGAA	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	1031
BarI	GAAGNNNNNNTAC	2 cut(s)	1105, 1137
BbvI	GCAGC	5 cut(s)	689, 1120, 1181, 1198, 1264
BccI	CCATC	3 cut(s)	47, 111, 559
BciT130I	CCWGG	2 cut(s)	1036, 1157
BciVI	GTATCC	1 cut(s)	911
BclI	TGATCA	1 cut(s)	952
BcoDI	GTCTC	3 cut(s)	631, 800, 1173
BfaI	CTAG	1 cut(s)	896
BfmI	CTRYAG	2 cut(s)	1077, 1134
BfuI	GTATCC	1 cut(s)	911
BisI	GCNGC	5 cut(s)	678, 1134, 1170, 1212, 1253
BlsI	GCNGC	5 cut(s)	679, 1135, 1171, 1213, 1254
Bme1390I	CCNGG	2 cut(s)	1036, 1157
Bme18I	GGWCC	1 cut(s)	1031
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	1031
BmiI	GGNNCC	1 cut(s)	1033
BmrFI	CCNGG	2 cut(s)	1036, 1157
BmsI	GCATC	5 cut(s)	439, 704, 843, 874, 1108
BpmI	CTGGAG	1 cut(s)	276
Bpu14I	TTCGAA	1 cut(s)	370
BpuEI	CTTGAG	2 cut(s)	126, 1238
BsaHI	GRCGYC	1 cut(s)	1182
BsaJI	CCNNGG	2 cut(s)	517, 1034
Bsc4I	CCNNNNNNNGG	1 cut(s)	1162
Bse1I	ACTGG	1 cut(s)	542
Bse3DI	GCAATG	2 cut(s)	672, 1090
BseBI	CCWGG	2 cut(s)	1036, 1157
BseDI	CCNNGG	2 cut(s)	517, 1034
BseGI	GGATG	3 cut(s)	103, 570, 1291
BseLI	CCNNNNNNNGG	1 cut(s)	1162
BseMI	GCAATG	2 cut(s)	672, 1090
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	5 cut(s)	689, 1120, 1181, 1198, 1264
BseYI	CCCAGC	1 cut(s)	913
BsgI	GTGCAG	2 cut(s)	1197, 1271
BsiHKCI	CYCGRG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	1162
BsmAI	GTCTC	3 cut(s)	631, 800, 1173
BsmBI	CGTCTC	1 cut(s)	1173
BsmFI	GGGAC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	838
BsoBI	CYCGRG	1 cut(s)	314
Bsp119I	TTCGAA	1 cut(s)	370
Bsp1407I	TGTACA	1 cut(s)	718
Bsp143I	GATC	6 cut(s)	265, 274, 385, 952, 1050, 1271
Bsp19I	CCATGG	1 cut(s)	517
BspACI	CCGC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	641
BspLI	GGNNCC	1 cut(s)	1033
BspMAI	CTGCAG	2 cut(s)	1081, 1138
BspPI	GGATC	1 cut(s)	260
BspT104I	TTCGAA	1 cut(s)	370
BsrDI	GCAATG	2 cut(s)	672, 1090
BsrGI	TGTACA	1 cut(s)	718
BsrI	ACTGG	1 cut(s)	542
BssECI	CCNNGG	2 cut(s)	517, 1034
BssMI	GATC	6 cut(s)	265, 274, 385, 952, 1050, 1271
BssNAI	GTATAC	1 cut(s)	547
BssNI	GRCGYC	1 cut(s)	1182
BssT1I	CCWWGG	1 cut(s)	517
Bst1107I	GTATAC	1 cut(s)	547
Bst2UI	CCWGG	2 cut(s)	1036, 1157
Bst4CI	ACNGT	3 cut(s)	306, 1097, 1112
Bst6I	CTCTTC	1 cut(s)	1122
BstACI	GRCGYC	1 cut(s)	1182
BstAPI	GCANNNNNTGC	1 cut(s)	1076
BstAUI	TGTACA	1 cut(s)	718
BstBI	TTCGAA	1 cut(s)	370
BstC8I	GCNNGC	2 cut(s)	753, 1081
BstDEI	CTNAG	3 cut(s)	628, 681, 712
BstDSI	CCRYGG	1 cut(s)	517
BstF5I	GGATG	3 cut(s)	103, 570, 1291
BstKTI	GATC	6 cut(s)	268, 277, 388, 955, 1053, 1274
BstMAI	GTCTC	3 cut(s)	631, 800, 1173
BstMBI	GATC	6 cut(s)	265, 274, 385, 952, 1050, 1271
BstMWI	GCNNNNNNNGC	5 cut(s)	404, 872, 1076, 1166, 1208
BstNI	CCWGG	2 cut(s)	1036, 1157
BstNSI	RCATGY	3 cut(s)	669, 692, 1259
BstSCI	CCNGG	2 cut(s)	1034, 1155
BstSFI	CTRYAG	2 cut(s)	1077, 1134
BstV1I	GCAGC	5 cut(s)	689, 1120, 1181, 1198, 1264
BstZ17I	GTATAC	1 cut(s)	547
BsuI	GTATCC	1 cut(s)	911
BtgI	CCRYGG	1 cut(s)	517
BtsCI	GGATG	3 cut(s)	103, 570, 1291
BtsI	GCAGTG	2 cut(s)	873, 1143
BtsIMutI	CAGTG	4 cut(s)	495, 644, 873, 1143
Cac8I	GCNNGC	2 cut(s)	753, 1081
Cfr13I	GGNCC	1 cut(s)	1031
CseI	GACGC	1 cut(s)	1190
Csp6I	GTAC	3 cut(s)	719, 990, 1289
CviAII	CATG	8 cut(s)	238, 509, 518, 623, 666, 689, 722, 1256
CviQI	GTAC	3 cut(s)	719, 990, 1289
DdeI	CTNAG	3 cut(s)	628, 681, 712
DpnI	GATC	6 cut(s)	267, 276, 387, 954, 1052, 1273
DpnII	GATC	6 cut(s)	265, 274, 385, 952, 1050, 1271
DraI	TTTAAA	2 cut(s)	187, 469
Eam1104I	CTCTTC	1 cut(s)	1122
EarI	CTCTTC	1 cut(s)	1122
Eco130I	CCWWGG	1 cut(s)	517
Eco32I	GATATC	1 cut(s)	659
Eco47I	GGWCC	1 cut(s)	1031
Eco57I	CTGAAG	4 cut(s)	81, 443, 1049, 1107
Eco88I	CYCGRG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	1031
EcoRII	CCWGG	2 cut(s)	1034, 1155
EcoRV	GATATC	1 cut(s)	659
EcoT14I	CCWWGG	1 cut(s)	517
ErhI	CCWWGG	1 cut(s)	517
Esp3I	CGTCTC	1 cut(s)	1173
FaeI	CATG	8 cut(s)	241, 512, 521, 626, 669, 692, 725, 1259
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	8 cut(s)	237, 508, 517, 622, 665, 688, 721, 1255
FbaI	TGATCA	1 cut(s)	952
FblI	GTMKAC	4 cut(s)	525, 538, 546, 570
Fnu4HI	GCNGC	5 cut(s)	678, 1134, 1170, 1212, 1253
FokI	GGATG	3 cut(s)	90, 577, 1278
Fsp4HI	GCNGC	5 cut(s)	678, 1134, 1170, 1212, 1253
FspBI	CTAG	1 cut(s)	896
GluI	GCNGC	5 cut(s)	678, 1134, 1170, 1212, 1253
GsaI	CCCAGC	1 cut(s)	917
GsuI	CTGGAG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	1190
Hin1I	GRCGYC	1 cut(s)	1182
Hin1II	CATG	8 cut(s)	241, 512, 521, 626, 669, 692, 725, 1259
HindIII	AAGCTT	1 cut(s)	873
HinfI	GANTC	7 cut(s)	34, 200, 290, 485, 513, 808, 904
Hpy166II	GTNNAC	7 cut(s)	89, 526, 539, 547, 571, 612, 1093
Hpy188I	TCNGA	8 cut(s)	39, 279, 423, 631, 780, 930, 1000, 1126
Hpy8I	GTNNAC	7 cut(s)	89, 526, 539, 547, 571, 612, 1093
HpyAV	CCTTC	2 cut(s)	168, 418
HpyCH4III	ACNGT	3 cut(s)	306, 1097, 1112
HpyCH4V	TGCA	9 cut(s)	452, 589, 677, 887, 1079, 1136, 1141, 1214, 1252
HpyF10VI	GCNNNNNNNGC	5 cut(s)	404, 872, 1076, 1166, 1208
HpyF3I	CTNAG	3 cut(s)	628, 681, 712
Hsp92I	GRCGYC	1 cut(s)	1182
Hsp92II	CATG	8 cut(s)	241, 512, 521, 626, 669, 692, 725, 1259
Ksp22I	TGATCA	1 cut(s)	952
Kzo9I	GATC	6 cut(s)	265, 274, 385, 952, 1050, 1271
LmnI	GCTCC	2 cut(s)	56, 674
Lsp1109I	GCAGC	5 cut(s)	689, 1120, 1181, 1198, 1264
LweI	GCATC	5 cut(s)	439, 704, 843, 874, 1108
MaeI	CTAG	1 cut(s)	896
MaeIII	GTNAC	3 cut(s)	592, 932, 1022
MalI	GATC	6 cut(s)	267, 276, 387, 954, 1052, 1273
MboI	GATC	6 cut(s)	265, 274, 385, 952, 1050, 1271
MboII	GAAGA	8 cut(s)	74, 156, 359, 505, 793, 1115, 1139, 1274
MluCI	AATT	9 cut(s)	282, 453, 470, 739, 774, 793, 922, 961, 1194
MlyI	GAGTC	3 cut(s)	209, 299, 802
MroXI	GAANNNNTTC	1 cut(s)	875
MseI	TTAA	5 cut(s)	186, 468, 576, 849, 1019
MslI	CAYNNNNRTG	2 cut(s)	242, 1058
MspR9I	CCNGG	2 cut(s)	1036, 1157
Mva1269I	GAATGC	1 cut(s)	838
MvaI	CCWGG	2 cut(s)	1036, 1157
MwoI	GCNNNNNNNGC	5 cut(s)	404, 872, 1076, 1166, 1208
NcoI	CCATGG	1 cut(s)	517
NdeII	GATC	6 cut(s)	265, 274, 385, 952, 1050, 1271
NlaIII	CATG	8 cut(s)	241, 512, 521, 626, 669, 692, 725, 1259
NlaIV	GGNNCC	1 cut(s)	1033
NmuCI	GTSAC	3 cut(s)	592, 932, 1022
NspI	RCATGY	3 cut(s)	669, 692, 1259
NspV	TTCGAA	1 cut(s)	370
OliI	CACNNNNGTG	1 cut(s)	1058
PaeR7I	CTCGAG	1 cut(s)	314
PctI	GAATGC	1 cut(s)	838
PdmI	GAANNNNTTC	1 cut(s)	875
PfeI	GAWTC	4 cut(s)	34, 485, 513, 904
PflMI	CCANNNNNTGG	1 cut(s)	1162
PkrI	GCNGC	5 cut(s)	679, 1135, 1171, 1213, 1254
PleI	GAGTC	3 cut(s)	208, 298, 802
PpsI	GAGTC	3 cut(s)	208, 298, 802
PpuMI	RGGWCCY	1 cut(s)	1031
PsiI	TTATAA	1 cut(s)	441
Psp5II	RGGWCCY	1 cut(s)	1031
Psp6I	CCWGG	2 cut(s)	1034, 1155
PspFI	CCCAGC	1 cut(s)	913
PspGI	CCWGG	2 cut(s)	1034, 1155
PspN4I	GGNNCC	1 cut(s)	1033
PspPI	GGNCC	1 cut(s)	1031
PspPPI	RGGWCCY	1 cut(s)	1031
PstI	CTGCAG	2 cut(s)	1081, 1138
RsaI	GTAC	3 cut(s)	720, 991, 1290
RsaNI	GTAC	3 cut(s)	719, 990, 1289
RseI	CAYNNNNRTG	2 cut(s)	242, 1058
SaqAI	TTAA	5 cut(s)	186, 468, 576, 849, 1019
SatI	GCNGC	5 cut(s)	678, 1134, 1170, 1212, 1253
Sau3AI	GATC	6 cut(s)	265, 274, 385, 952, 1050, 1271
Sau96I	GGNCC	1 cut(s)	1031
SchI	GAGTC	3 cut(s)	209, 299, 802
ScrFI	CCNGG	2 cut(s)	1036, 1157
SfaNI	GCATC	5 cut(s)	439, 704, 843, 874, 1108
SfcI	CTRYAG	2 cut(s)	1077, 1134
Sfr274I	CTCGAG	1 cut(s)	314
SfuI	TTCGAA	1 cut(s)	370
SinI	GGWCC	1 cut(s)	1031
SlaI	CTCGAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	242, 1058
SmlI	CTYRAG	3 cut(s)	141, 314, 1217
SmoI	CTYRAG	3 cut(s)	141, 314, 1217
Sse9I	AATT	9 cut(s)	282, 453, 470, 739, 774, 793, 922, 961, 1194
SsiI	CCGC	1 cut(s)	361
SspMI	CTAG	1 cut(s)	896
StyD4I	CCNGG	2 cut(s)	1034, 1155
StyI	CCWWGG	1 cut(s)	517
TaaI	ACNGT	3 cut(s)	306, 1097, 1112
TaqI	TCGA	8 cut(s)	173, 298, 315, 370, 447, 552, 746, 1177
TaqII	GACCGA	1 cut(s)	543
TasI	AATT	9 cut(s)	282, 453, 470, 739, 774, 793, 922, 961, 1194
TatI	WGTACW	3 cut(s)	718, 989, 1288
TfiI	GAWTC	4 cut(s)	34, 485, 513, 904
Tru1I	TTAA	5 cut(s)	186, 468, 576, 849, 1019
Tru9I	TTAA	5 cut(s)	186, 468, 576, 849, 1019
TscAI	CASTG	4 cut(s)	495, 651, 873, 1143
TseFI	GTSAC	3 cut(s)	592, 932, 1022
TseI	GCWGC	5 cut(s)	677, 1133, 1169, 1211, 1252
Tsp45I	GTSAC	3 cut(s)	592, 932, 1022
TspDTI	ATGAA	5 cut(s)	81, 150, 254, 498, 1116
TspGWI	ACGGA	1 cut(s)	904
TspRI	CASTG	4 cut(s)	495, 651, 873, 1143
Van91I	CCANNNNNTGG	1 cut(s)	1162
VpaK11BI	GGWCC	1 cut(s)	1031
XapI	RAATTY	3 cut(s)	470, 739, 774
XceI	RCATGY	3 cut(s)	669, 692, 1259
XhoI	CTCGAG	1 cut(s)	314
XmiI	GTMKAC	4 cut(s)	525, 538, 546, 570
XmnI	GAANNNNTTC	1 cut(s)	875
XspI	CTAG	1 cut(s)	896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.