Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011895

Physical Location & Seq

Genomic Coordinates Reverse (-)

18524337 .. 18528533

Gene Structure 4197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG203400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGCTTACATCAAAACGAGAAGCACTAGATAGGGATATAGTGATTTCGAGAGGCATTGGAGATGGAGAGGATGGTAAACCCTCATCAAGTTTAGGTAAACCTAAAACTATTCATCCTTCCATTGAAACCCATTGGCATTTCCCTGCGCCTCAAGATAGCAAAAAGCCTTCATCTTCAATGTCGAACTTGGGATTCAAAAAGTTCCGTGAGTCGTTCAAGAAACTTGGAGGGAGTAGTAGGAAGAGCATGAAAATGGTTCTTGCAGGAGTTCGTGATCCGAAAGATCAAAAGCTTGTTGACTCTTTTCGAGAACTGCTGTTCCTCGAGGGTCAGCTTCCTTCACAGCACCAGGATTATCATACACTCTTGCGGTTTCTTCGAATGAGGGACTTTGATCTTGCTAAAGCAAAAGAGGCCTTCTTTACTTATCTCAAGTGGCGTGAGGATTATAGGGTTGACGCAATTCCAAAAGAGTTCAAGTTTGAGGAATATGAGGCAGTTAAAAAGTGCTATCCTCATGGATTCCACGGGGTAGACCTATATGGTAGACCAGTATACATCGAAAGGATTGGGATGGTAGACCTTAACAAGCTACTACAAGTAACTACACTTGAAAGATTTACAAAGTATCATGTGTTAGAACAAGAGAAAACATTGAATGTGAGATACCCTACTTGCTCCATTGCAGCTAAGAAGCATGTAGCATCTACAACAAGTATCTTAGATGTGCATGGAGTGGGATTGGCAAATTTCTCGAAGCCTGCTCGATATCTCTTTATGGAAATTCAGAAGATTGATAGCAATTACTACCCAGAGACTCTAAATCGCCTGTTTATTGTGAATGCTGGAAATGGGTTTAAGATGCTGTGGAAAGCAGTGAAAGCTTTCCTTGATGCACGAACATTAGCAAAGATTCGAGTGCTGGGATACAATTATCAGAGTGACTTGCTCGAAGTAATTGATCAAAGTAATTTGCCGACATTTCTGGGTGGAAGCTGCACTTGTTCTGAATATGGGGGCTGCCTTTTAAGTGACAAAGGACCCTGGAACAATCCGGAGATTACAGATGTGCTTCAGGCAATCTCTGCAGGCAATGAGGTAACCGATAATGAAGAATATAGTAATGAGGCTTCAGAAGAGCCGCCGCCGATGCAAAATAGGAAAATCCAAGTTCTAGAAGCAGCACTTCAAGACGCGAAGAAAAAAATTGAAGCATTAGAAGCTGCACTTGAGGACACCAAGAATGTCTTGAAAGAACTTGTGCAGCATGTAGAAGAGTTGAGATCAACTTCTTGGGAAGTACATTGCACTTCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

439

Amino Acids

49.97

Weight (kDa)

7.63

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	171 - 331	4.4e-27	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47510 AT5G47510 AT5G47510 AT5G47510
fragaria_vesca	FvH4_5g18760 FvH4_5g18760
malus_domestica	MD00G1043800.v1.1
prunus_persica	Prupe.5G071000_v2.0.a1
pyrus_communis	pycom976g00060
rosa_chinensis	RchiOBHm_Chr7g0203101
rosa_laevigata	RLG00000003552
rosa_multiflora	Rmu_sc0004999.1_g000010
rosa_roxburghii	Rroxscaffold_3G00254070
rosa_rugosa	Rorug07G0074600
rosa_samantha	Rh7AG203400 Rh7BG203000 Rh7CG214100 Rh7DG210100
rosa_wichuraiana	Rw7G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	323
AccI	GTMKAC	4 cut(s)	534, 547, 555, 579
AccII	CGCG	1 cut(s)	1196
AccIII	TCCGGA	1 cut(s)	1054
AciI	CCGC	3 cut(s)	370, 1142, 1145
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	748, 783
AcuI	CTGAAG	2 cut(s)	1058, 1116
AfaI	GTAC	1 cut(s)	1302
AjnI	CCWGG	2 cut(s)	348, 1043
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	7 cut(s)	292, 334, 592, 689, 884, 996, 1223
AluI	AGCT	7 cut(s)	292, 334, 592, 689, 884, 996, 1223
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	1054
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	6 cut(s)	686, 996, 1020, 1181, 1223, 1264
ApoI	RAATTY	2 cut(s)	748, 783
Asp700I	GAANNNNTTC	1 cut(s)	884
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	1040
AsuII	TTCGAA	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	1040
BarI	GAAGNNNNNNTAC	2 cut(s)	1114, 1146
BbvI	GCAGC	6 cut(s)	698, 983, 1007, 1193, 1210, 1276
BccI	CCATC	3 cut(s)	56, 65, 568
BcgI	CGANNNNNNTGC	2 cut(s)	735, 769
BciT130I	CCWGG	2 cut(s)	350, 1045
BciVI	GTATCC	1 cut(s)	920
BclI	TGATCA	1 cut(s)	961
BcoDI	GTCTC	1 cut(s)	809
BfaI	CTAG	2 cut(s)	26, 1175
BfmI	CTRYAG	1 cut(s)	1086
BfuI	GTATCC	1 cut(s)	920
BisI	GCNGC	8 cut(s)	687, 997, 1021, 1142, 1145, 1182, 1224, 1265
BlsI	GCNGC	8 cut(s)	688, 998, 1022, 1143, 1146, 1183, 1225, 1266
Bme1390I	CCNGG	2 cut(s)	350, 1045
Bme18I	GGWCC	1 cut(s)	1040
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	1040
BmiI	GGNNCC	1 cut(s)	1042
BmrFI	CCNGG	2 cut(s)	350, 1045
BmsI	GCATC	4 cut(s)	713, 852, 883, 1140
Bpu14I	TTCGAA	1 cut(s)	379
BpuEI	CTTGAG	3 cut(s)	135, 416, 1250
BsaJI	CCNNGG	2 cut(s)	526, 1043
BsaWI	WCCGGW	1 cut(s)	1054
Bse1I	ACTGG	1 cut(s)	551
Bse3DI	GCAATG	3 cut(s)	681, 1099, 1303
BseAI	TCCGGA	1 cut(s)	1054
BseBI	CCWGG	2 cut(s)	350, 1045
BseDI	CCNNGG	2 cut(s)	526, 1043
BseGI	GGATG	3 cut(s)	76, 112, 579
BseMI	GCAATG	3 cut(s)	681, 1099, 1303
BseNI	ACTGG	1 cut(s)	551
BseXI	GCAGC	6 cut(s)	698, 983, 1007, 1193, 1210, 1276
BseYI	CCCAGC	1 cut(s)	922
BsgI	GTGCAG	3 cut(s)	982, 1209, 1283
Bsh1236I	CGCG	1 cut(s)	1196
BshFI	GGCC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	1055
BslFI	GGGAC	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	809
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	847
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	379
Bsp13I	TCCGGA	1 cut(s)	1054
Bsp143I	GATC	5 cut(s)	274, 283, 394, 961, 1283
BspACI	CCGC	3 cut(s)	370, 1142, 1145
BspANI	GGCC	1 cut(s)	416
BspEI	TCCGGA	1 cut(s)	1054
BspFNI	CGCG	1 cut(s)	1196
BspLI	GGNNCC	1 cut(s)	1042
BspMAI	CTGCAG	1 cut(s)	1090
BspPI	GGATC	1 cut(s)	269
BspQI	GCTCTTC	2 cut(s)	236, 1131
BspT104I	TTCGAA	1 cut(s)	379
BsrDI	GCAATG	3 cut(s)	681, 1099, 1303
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	2 cut(s)	526, 1043
BssMI	GATC	5 cut(s)	274, 283, 394, 961, 1283
BssNAI	GTATAC	1 cut(s)	556
Bst1107I	GTATAC	1 cut(s)	556
Bst2UI	CCWGG	2 cut(s)	350, 1045
Bst6I	CTCTTC	3 cut(s)	236, 1131, 1269
BstAPI	GCANNNNNTGC	1 cut(s)	1085
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	762, 1090
BstDEI	CTNAG	2 cut(s)	690, 721
BstDSI	CCRYGG	1 cut(s)	526
BstEII	GGTNACC	1 cut(s)	1099
BstF5I	GGATG	3 cut(s)	76, 112, 579
BstFNI	CGCG	1 cut(s)	1196
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	5 cut(s)	277, 286, 397, 964, 1286
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	5 cut(s)	274, 283, 394, 961, 1283
BstMWI	GCNNNNNNNGC	5 cut(s)	413, 881, 1085, 1150, 1220
BstNI	CCWGG	2 cut(s)	350, 1045
BstNSI	RCATGY	2 cut(s)	701, 1271
BstPI	GGTNACC	1 cut(s)	1099
BstSCI	CCNGG	2 cut(s)	348, 1043
BstSFI	CTRYAG	1 cut(s)	1086
BstUI	CGCG	1 cut(s)	1196
BstV1I	GCAGC	6 cut(s)	698, 983, 1007, 1193, 1210, 1276
BstZ17I	GTATAC	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	920
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	76, 112, 579
BtsI	GCAGTG	1 cut(s)	882
BtsIMutI	CAGTG	1 cut(s)	882
Cac8I	GCNNGC	2 cut(s)	762, 1090
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	1040
CseI	GACGC	2 cut(s)	467, 1202
Csp6I	GTAC	1 cut(s)	1301
CviAII	CATG	6 cut(s)	247, 518, 632, 698, 731, 1268
CviQI	GTAC	1 cut(s)	1301
DdeI	CTNAG	2 cut(s)	690, 721
DpnI	GATC	5 cut(s)	276, 285, 396, 963, 1285
DpnII	GATC	5 cut(s)	274, 283, 394, 961, 1283
Eam1104I	CTCTTC	3 cut(s)	236, 1131, 1269
EarI	CTCTTC	3 cut(s)	236, 1131, 1269
Eco147I	AGGCCT	1 cut(s)	416
Eco32I	GATATC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	1040
Eco57I	CTGAAG	2 cut(s)	1058, 1116
Eco88I	CYCGRG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	1099
EcoO109I	RGGNCCY	1 cut(s)	1040
EcoO65I	GGTNACC	1 cut(s)	1099
EcoRII	CCWGG	2 cut(s)	348, 1043
EcoRV	GATATC	1 cut(s)	770
FaeI	CATG	6 cut(s)	250, 521, 635, 701, 734, 1271
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	6 cut(s)	246, 517, 631, 697, 730, 1267
FbaI	TGATCA	1 cut(s)	961
FblI	GTMKAC	4 cut(s)	534, 547, 555, 579
Fnu4HI	GCNGC	8 cut(s)	687, 997, 1021, 1142, 1145, 1182, 1224, 1265
FokI	GGATG	3 cut(s)	83, 99, 586
Fsp4HI	GCNGC	8 cut(s)	687, 997, 1021, 1142, 1145, 1182, 1224, 1265
FspBI	CTAG	2 cut(s)	26, 1175
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	8 cut(s)	687, 997, 1021, 1142, 1145, 1182, 1224, 1265
GsaI	CCCAGC	1 cut(s)	926
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	1 cut(s)	1055
HgaI	GACGC	2 cut(s)	467, 1202
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	6 cut(s)	250, 521, 635, 701, 734, 1271
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	2 cut(s)	298, 457
HindII	GTYRAC	2 cut(s)	298, 457
HindIII	AAGCTT	2 cut(s)	290, 882
HinfI	GANTC	6 cut(s)	192, 209, 299, 522, 817, 913
HpaII	CCGG	1 cut(s)	1055
Hpy166II	GTNNAC	8 cut(s)	77, 98, 298, 457, 535, 548, 556, 580
Hpy188I	TCNGA	5 cut(s)	279, 789, 939, 1009, 1135
Hpy8I	GTNNAC	8 cut(s)	77, 98, 298, 457, 535, 548, 556, 580
HpyAV	CCTTC	4 cut(s)	126, 177, 348, 427
HpyF10VI	GCNNNNNNNGC	5 cut(s)	413, 881, 1085, 1150, 1220
HpyF3I	CTNAG	2 cut(s)	690, 721
Hsp92II	CATG	6 cut(s)	250, 521, 635, 701, 734, 1271
HspAI	GCGC	1 cut(s)	146
Kpn2I	TCCGGA	1 cut(s)	1054
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	5 cut(s)	274, 283, 394, 961, 1283
LguI	GCTCTTC	2 cut(s)	236, 1131
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	6 cut(s)	698, 983, 1007, 1193, 1210, 1276
LweI	GCATC	4 cut(s)	713, 852, 883, 1140
MaeI	CTAG	2 cut(s)	26, 1175
MaeIII	GTNAC	4 cut(s)	601, 941, 1031, 1099
MalI	GATC	5 cut(s)	276, 285, 396, 963, 1285
MboI	GATC	5 cut(s)	274, 283, 394, 961, 1283
MboII	GAAGA	8 cut(s)	165, 253, 368, 802, 1124, 1148, 1210, 1286
MluCI	AATT	9 cut(s)	462, 748, 783, 802, 931, 957, 970, 1206, 1315
MlyI	GAGTC	3 cut(s)	218, 293, 811
MroI	TCCGGA	1 cut(s)	1054
MroXI	GAANNNNTTC	1 cut(s)	884
MseI	TTAA	4 cut(s)	501, 585, 858, 1028
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	1055
MspR9I	CCNGG	2 cut(s)	350, 1045
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	2 cut(s)	350, 1045
MvnI	CGCG	1 cut(s)	1196
MwoI	GCNNNNNNNGC	5 cut(s)	413, 881, 1085, 1150, 1220
NdeII	GATC	5 cut(s)	274, 283, 394, 961, 1283
NlaIII	CATG	6 cut(s)	250, 521, 635, 701, 734, 1271
NlaIV	GGNNCC	1 cut(s)	1042
NmuCI	GTSAC	2 cut(s)	941, 1031
NspI	RCATGY	2 cut(s)	701, 1271
NspV	TTCGAA	1 cut(s)	379
PaeR7I	CTCGAG	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	416
PciSI	GCTCTTC	2 cut(s)	236, 1131
PctI	GAATGC	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	884
PfeI	GAWTC	3 cut(s)	192, 522, 913
PkrI	GCNGC	8 cut(s)	688, 998, 1022, 1143, 1146, 1183, 1225, 1266
PleI	GAGTC	3 cut(s)	217, 293, 811
PpsI	GAGTC	3 cut(s)	217, 293, 811
PpuMI	RGGWCCY	1 cut(s)	1040
Psp5II	RGGWCCY	1 cut(s)	1040
Psp6I	CCWGG	2 cut(s)	348, 1043
PspEI	GGTNACC	1 cut(s)	1099
PspFI	CCCAGC	1 cut(s)	922
PspGI	CCWGG	2 cut(s)	348, 1043
PspN4I	GGNNCC	1 cut(s)	1042
PspPI	GGNCC	1 cut(s)	1040
PspPPI	RGGWCCY	1 cut(s)	1040
PspXI	VCTCGAGB	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	1090
RsaI	GTAC	1 cut(s)	1302
RsaNI	GTAC	1 cut(s)	1301
RseI	CAYNNNNRTG	1 cut(s)	251
SapI	GCTCTTC	2 cut(s)	236, 1131
SaqAI	TTAA	4 cut(s)	501, 585, 858, 1028
SatI	GCNGC	8 cut(s)	687, 997, 1021, 1142, 1145, 1182, 1224, 1265
Sau3AI	GATC	5 cut(s)	274, 283, 394, 961, 1283
Sau96I	GGNCC	1 cut(s)	1040
SchI	GAGTC	3 cut(s)	218, 293, 811
ScrFI	CCNGG	2 cut(s)	350, 1045
SfaNI	GCATC	4 cut(s)	713, 852, 883, 1140
SfcI	CTRYAG	1 cut(s)	1086
Sfr274I	CTCGAG	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	379
SinI	GGWCC	1 cut(s)	1040
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	4 cut(s)	150, 323, 431, 1229
SmoI	CTYRAG	4 cut(s)	150, 323, 431, 1229
Sse9I	AATT	9 cut(s)	462, 748, 783, 802, 931, 957, 970, 1206, 1315
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	3 cut(s)	370, 1142, 1145
SspMI	CTAG	2 cut(s)	26, 1175
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	348, 1043
TasI	AATT	9 cut(s)	462, 748, 783, 802, 931, 957, 970, 1206, 1315
TatI	WGTACW	1 cut(s)	1300
TauI	GCSGC	2 cut(s)	1144, 1147
TfiI	GAWTC	3 cut(s)	192, 522, 913
Tru1I	TTAA	4 cut(s)	501, 585, 858, 1028
Tru9I	TTAA	4 cut(s)	501, 585, 858, 1028
TscAI	CASTG	1 cut(s)	882
TseFI	GTSAC	2 cut(s)	941, 1031
TseI	GCWGC	6 cut(s)	686, 996, 1020, 1181, 1223, 1264
Tsp45I	GTSAC	2 cut(s)	941, 1031
TspDTI	ATGAA	4 cut(s)	101, 159, 263, 1125
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	882
VpaK11BI	GGWCC	1 cut(s)	1040
XapI	RAATTY	2 cut(s)	748, 783
XbaI	TCTAGA	1 cut(s)	1174
XceI	RCATGY	2 cut(s)	701, 1271
XhoI	CTCGAG	1 cut(s)	323
XmiI	GTMKAC	4 cut(s)	534, 547, 555, 579
XmnI	GAANNNNTTC	1 cut(s)	884
XspI	CTAG	2 cut(s)	26, 1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.