Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011895

Physical Location & Seq

Genomic Coordinates Forward (+)

8610600 .. 8615055

Gene Structure 4456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G071000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGTATAAGTCAAAAGAAGACAGGGATATAGTCATATCTAAAGGTGGTGGAGATGGAGATGGAGATGGCGATGTTGCCTCAAGTTCAGGGAAGCCCAAAATTCTTCATCCACCCATTGAAAGCCATTGGCATCTCCCTCCTCAAGACAAACACAGGCCTTCATCTTCAATGTCAAACTTAGGCCTCAAGACAATGATCAAGTTTCGCGACACGTTCAAGAAGCTTGGAGGGAGTAGCAGCAGCATCAGCAGCAATAAGAGCTTGAAAACGGTTCTCGGAGGAGTTCGTGATCCAAAGGATGAAAAAGTTGTAGAGTGTTTCAGAGAACTGCTTTTCCTTGAGGACCAGCTTCCTCCACAGCACAATGATTATCATACCCTTTTAAGGTTTCTCAGAATGAGGGACTTTGATTTTACAAAAGCAAAAGATGCCTTCTTGAGTTATCTTAAGTGGCGCGAGGATTATATGGTTGATGCAATTCCAAAGGAGTTTAAGTTTGAGGAGTATGAAGCAGTAAAGAAATGCTATCCTCATGGATATCATGGGGTAGACCGGTACGGTAGACCGTTGTACATCGAAAGAATCGGGATGGTAGACCTTAACAAGCTTCTGCAAGTAACTACCCTTGAAAGATTTACCAAGTATCATGTGTCGGAACAAGAGAAAACATTAAATTGGAGATACCCTGCATGTTCACTTGCAGCCAAGAGGCATGTAGCATCTACAACAAGTATTTTAGATGTGCATGGAGTGGGATTGGCTAATTTCTCAAAGCCTGCTAGATATCTCTTCATGGAAATTCAGAAGATTGATAGCAATTACTACCCAGAGACTCTAAATCGCCTGTTTATTGTGAATGCTGGATCTGGGTTTAAAATGCTGTGGAAAGCAGTGAAGGCTTTCCTTGATGCACGCACATTAGCAAAGATTCAGGTGCTGGGATACAATTACCAAAGTAACCTGCTTGATGTTGTTGAACAAAGCAATTTGCCAACTTTTCTGGGTGGAGGCTGCACCTGTTCTGATTATGGAGGCTGCCTTTTAAGTGACAAAGGACCCTGGAACAATCCAGATATTACAGAAATGCTTCAAGCAATTTCTGCAGACAATAATGGGGTCAACAATTATGAAGAAAATGGTCATTTGGATTCAGATGAGGAGCTTTTACGCAATATAAAAATCAAGGCCTTGGAAGCAGAATTTAGAGAGGCCAACAAAAAAATTCAAGCATTAGAAGCTGCACTTGAGGAAGCCAAGATAGTCTTGAAAGAACTTGGCCAGCAGGTTGAAGAGTTGAGATCAACTCCTTTTGAAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

440

Amino Acids

49.81

Weight (kDa)

6.48

Isoelectric Point (pI)

42.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47510 AT5G47510 AT5G47510 AT5G47510
fragaria_vesca	FvH4_5g18760 FvH4_5g18760
malus_domestica	MD00G1043800.v1.1
prunus_persica	Prupe.5G071000_v2.0.a1
pyrus_communis	pycom976g00060
rosa_chinensis	RchiOBHm_Chr7g0203101
rosa_laevigata	RLG00000003552
rosa_multiflora	Rmu_sc0004999.1_g000010
rosa_roxburghii	Rroxscaffold_3G00254070
rosa_rugosa	Rorug07G0074600
rosa_samantha	Rh7AG203400 Rh7BG203000 Rh7CG214100 Rh7DG210100
rosa_wichuraiana	Rw7G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	969, 1273
AccI	GTMKAC	3 cut(s)	549, 562, 594
AccII	CGCG	2 cut(s)	207, 456
AclWI	GGATC	2 cut(s)	284, 871
AcoI	YGGCCR	1 cut(s)	1276
AcsI	RAATTY	4 cut(s)	99, 798, 1199, 1221
AfaI	GTAC	2 cut(s)	557, 572
AfiI	CCNNNNNNNGG	2 cut(s)	384, 1313
AflII	CTTAAG	1 cut(s)	446
AflIII	ACRYGT	1 cut(s)	210
AgeI	ACCGGT	1 cut(s)	552
AjnI	CCWGG	1 cut(s)	1058
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	6 cut(s)	223, 261, 349, 607, 1162, 1238
AluI	AGCT	6 cut(s)	223, 261, 349, 607, 1162, 1238
Alw26I	GTCTC	1 cut(s)	824
AlwI	GGATC	2 cut(s)	284, 871
AlwNI	CAGNNNCTG	1 cut(s)	937
AoxI	GGCC	5 cut(s)	155, 181, 1185, 1209, 1276
ApeKI	GCWGC	7 cut(s)	237, 240, 249, 701, 1011, 1035, 1238
ApoI	RAATTY	4 cut(s)	99, 798, 1199, 1221
AsiGI	ACCGGT	1 cut(s)	552
Asp700I	GAANNNNTTC	2 cut(s)	899, 1086
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	2 cut(s)	343, 1055
AvaII	GGWCC	2 cut(s)	343, 1055
BalI	TGGCCA	1 cut(s)	1278
BbsI	GAAGAC	1 cut(s)	24
BbvI	GCAGC	7 cut(s)	249, 252, 261, 713, 998, 1022, 1225
BccI	CCATC	4 cut(s)	47, 53, 59, 583
BciT130I	CCWGG	1 cut(s)	1060
BciVI	GTATCC	1 cut(s)	935
BclI	TGATCA	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	824
BfaI	CTAG	1 cut(s)	780
BfmI	CTRYAG	1 cut(s)	1101
BfrI	CTTAAG	1 cut(s)	446
BfuAI	ACCTGC	2 cut(s)	969, 1273
BfuI	GTATCC	1 cut(s)	935
BisI	GCNGC	7 cut(s)	238, 241, 250, 702, 1012, 1036, 1239
BlsI	GCNGC	7 cut(s)	239, 242, 251, 703, 1013, 1037, 1240
Bme1390I	CCNGG	1 cut(s)	1060
Bme18I	GGWCC	2 cut(s)	343, 1055
BmgT120I	GGNCC	2 cut(s)	343, 1055
BmiI	GGNNCC	1 cut(s)	1057
BmrFI	CCNGG	1 cut(s)	1060
BmsI	GCATC	6 cut(s)	139, 252, 418, 463, 728, 898
BpiI	GAAGAC	1 cut(s)	24
BplI	GAGNNNNNCTC	2 cut(s)	1288, 1320
BpuEI	CTTGAG	6 cut(s)	64, 126, 170, 359, 457, 1265
BsaJI	CCNNGG	2 cut(s)	1058, 1188
BsaWI	WCCGGW	1 cut(s)	552
BsaXI	ACNNNNNCTCC	2 cut(s)	479, 509
Bsc4I	CCNNNNNNNGG	2 cut(s)	384, 1313
Bse118I	RCCGGY	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	1060
BseDI	CCNNGG	2 cut(s)	1058, 1188
BseGI	GGATG	3 cut(s)	106, 304, 594
BseLI	CCNNNNNNNGG	2 cut(s)	384, 1313
BseMII	CTCAG	1 cut(s)	406
BseRI	GAGGAG	4 cut(s)	129, 294, 515, 1172
BseXI	GCAGC	7 cut(s)	249, 252, 261, 713, 998, 1022, 1225
BseYI	CCCAGC	1 cut(s)	937
BsgI	GTGCAG	2 cut(s)	997, 1224
Bsh1236I	CGCG	2 cut(s)	207, 456
BshFI	GGCC	5 cut(s)	157, 183, 1187, 1211, 1278
BshTI	ACCGGT	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	553
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	384, 1313
BsmAI	GTCTC	1 cut(s)	824
BsmFI	GGGAC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	5 cut(s)	157, 183, 1187, 1211, 1278
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	4 cut(s)	195, 289, 863, 1298
Bsp68I	TCGCGA	1 cut(s)	207
BspANI	GGCC	5 cut(s)	157, 183, 1187, 1211, 1278
BspCNI	CTCAG	1 cut(s)	405
BspFNI	CGCG	2 cut(s)	207, 456
BspLI	GGNNCC	1 cut(s)	1057
BspMAI	CTGCAG	1 cut(s)	1105
BspMI	ACCTGC	2 cut(s)	969, 1273
BspPI	GGATC	2 cut(s)	284, 871
BspTI	CTTAAG	1 cut(s)	446
BsrFI	RCCGGY	1 cut(s)	552
BsrGI	TGTACA	1 cut(s)	570
BssAI	RCCGGY	1 cut(s)	552
BssECI	CCNNGG	2 cut(s)	1058, 1188
BssMI	GATC	4 cut(s)	195, 289, 863, 1298
BssT1I	CCWWGG	1 cut(s)	1188
Bst2UI	CCWGG	1 cut(s)	1060
Bst4CI	ACNGT	3 cut(s)	271, 560, 567
Bst6I	CTCTTC	2 cut(s)	794, 1284
BstAFI	CTTAAG	1 cut(s)	446
BstAPI	GCANNNNNTGC	2 cut(s)	428, 1100
BstAUI	TGTACA	1 cut(s)	570
BstC8I	GCNNGC	3 cut(s)	777, 913, 1280
BstDEI	CTNAG	2 cut(s)	178, 392
BstENI	CCTNNNNNAGG	1 cut(s)	1311
BstF5I	GGATG	3 cut(s)	106, 304, 594
BstFNI	CGCG	2 cut(s)	207, 456
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	4 cut(s)	198, 292, 866, 1301
BstMAI	GTCTC	1 cut(s)	824
BstMBI	GATC	4 cut(s)	195, 289, 863, 1298
BstMWI	GCNNNNNNNGC	8 cut(s)	246, 249, 258, 428, 896, 1100, 1193, 1235
BstNI	CCWGG	1 cut(s)	1060
BstNSI	RCATGY	2 cut(s)	693, 716
BstSCI	CCNGG	1 cut(s)	1058
BstSFI	CTRYAG	1 cut(s)	1101
BstUI	CGCG	2 cut(s)	207, 456
BstV1I	GCAGC	7 cut(s)	249, 252, 261, 713, 998, 1022, 1225
BstV2I	GAAGAC	1 cut(s)	24
BstX2I	RGATCY	1 cut(s)	863
BstYI	RGATCY	1 cut(s)	863
BsuI	GTATCC	1 cut(s)	935
BsuRI	GGCC	5 cut(s)	157, 183, 1187, 1211, 1278
BtgZI	GCGATG	1 cut(s)	84
BtsCI	GGATG	3 cut(s)	106, 304, 594
BtsI	GCAGTG	1 cut(s)	897
BtsIMutI	CAGTG	1 cut(s)	897
BtuMI	TCGCGA	1 cut(s)	207
BveI	ACCTGC	2 cut(s)	969, 1273
Cac8I	GCNNGC	3 cut(s)	777, 913, 1280
CaiI	CAGNNNCTG	1 cut(s)	937
CfoI	GCGC	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	552
Cfr13I	GGNCC	2 cut(s)	343, 1055
Csp6I	GTAC	2 cut(s)	556, 571
CspAI	ACCGGT	1 cut(s)	552
CviAII	CATG	7 cut(s)	533, 542, 647, 690, 713, 746, 793
CviQI	GTAC	2 cut(s)	556, 571
DdeI	CTNAG	2 cut(s)	178, 392
DpnI	GATC	4 cut(s)	197, 291, 865, 1300
DpnII	GATC	4 cut(s)	195, 289, 863, 1298
DraI	TTTAAA	1 cut(s)	874
EaeI	YGGCCR	1 cut(s)	1276
Eam1104I	CTCTTC	2 cut(s)	794, 1284
EarI	CTCTTC	2 cut(s)	794, 1284
Eco130I	CCWWGG	1 cut(s)	1188
Eco147I	AGGCCT	3 cut(s)	157, 183, 1187
Eco32I	GATATC	2 cut(s)	539, 785
Eco47I	GGWCC	2 cut(s)	343, 1055
EcoNI	CCTNNNNNAGG	1 cut(s)	1311
EcoO109I	RGGNCCY	1 cut(s)	1055
EcoRII	CCWGG	1 cut(s)	1058
EcoRV	GATATC	2 cut(s)	539, 785
EcoT14I	CCWWGG	1 cut(s)	1188
ErhI	CCWWGG	1 cut(s)	1188
FaeI	CATG	7 cut(s)	536, 545, 650, 693, 716, 749, 796
FalI	AAGNNNNNCTT	4 cut(s)	1227, 1259, 1247, 1279
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	7 cut(s)	532, 541, 646, 689, 712, 745, 792
FbaI	TGATCA	1 cut(s)	195
FblI	GTMKAC	3 cut(s)	549, 562, 594
Fnu4HI	GCNGC	7 cut(s)	238, 241, 250, 702, 1012, 1036, 1239
FokI	GGATG	3 cut(s)	93, 311, 601
Fsp4HI	GCNGC	7 cut(s)	238, 241, 250, 702, 1012, 1036, 1239
FspBI	CTAG	1 cut(s)	780
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	7 cut(s)	238, 241, 250, 702, 1012, 1036, 1239
GsaI	CCCAGC	1 cut(s)	941
HaeIII	GGCC	5 cut(s)	157, 183, 1187, 1211, 1278
HapII	CCGG	1 cut(s)	553
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	7 cut(s)	536, 545, 650, 693, 716, 749, 796
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	1120
HindII	GTYRAC	1 cut(s)	1120
HindIII	AAGCTT	2 cut(s)	221, 605
HinfI	GANTC	4 cut(s)	582, 832, 928, 1148
HpaII	CCGG	1 cut(s)	553
Hpy166II	GTNNAC	5 cut(s)	550, 563, 595, 695, 1120
Hpy188I	TCNGA	7 cut(s)	278, 323, 395, 655, 804, 1024, 1153
Hpy188III	TCNNGA	9 cut(s)	143, 187, 206, 217, 287, 436, 586, 1070, 1264
Hpy8I	GTNNAC	5 cut(s)	550, 563, 595, 695, 1120
HpyAV	CCTTC	4 cut(s)	168, 442, 889, 1307
HpyCH4III	ACNGT	3 cut(s)	271, 560, 567
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	9 cut(s)	476, 613, 689, 701, 745, 911, 1014, 1103, 1241
HpyF10VI	GCNNNNNNNGC	8 cut(s)	246, 249, 258, 428, 896, 1100, 1193, 1235
HpyF3I	CTNAG	2 cut(s)	178, 392
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	7 cut(s)	536, 545, 650, 693, 716, 749, 796
HspAI	GCGC	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	4 cut(s)	195, 289, 863, 1298
LmnI	GCTCC	1 cut(s)	1159
Lsp1109I	GCAGC	7 cut(s)	249, 252, 261, 713, 998, 1022, 1225
LweI	GCATC	6 cut(s)	139, 252, 418, 463, 728, 898
MaeI	CTAG	1 cut(s)	780
MaeII	ACGT	1 cut(s)	212
MaeIII	GTNAC	3 cut(s)	616, 956, 1046
MalI	GATC	4 cut(s)	197, 291, 865, 1300
MboI	GATC	4 cut(s)	195, 289, 863, 1298
MboII	GAAGA	7 cut(s)	29, 95, 156, 781, 817, 1142, 1301
MflI	RGATCY	1 cut(s)	863
MlsI	TGGCCA	1 cut(s)	1278
MluNI	TGGCCA	1 cut(s)	1278
MlyI	GAGTC	1 cut(s)	826
MmeI	TCCRAC	1 cut(s)	633
Mox20I	TGGCCA	1 cut(s)	1278
MroXI	GAANNNNTTC	2 cut(s)	899, 1086
MscI	TGGCCA	1 cut(s)	1278
MseI	TTAA	7 cut(s)	383, 447, 492, 600, 671, 873, 1043
Msp20I	TGGCCA	1 cut(s)	1278
MspCI	CTTAAG	1 cut(s)	446
MspI	CCGG	1 cut(s)	553
MspR9I	CCNGG	1 cut(s)	1060
Mva1269I	GAATGC	1 cut(s)	862
MvaI	CCWGG	1 cut(s)	1060
MvnI	CGCG	2 cut(s)	207, 456
MwoI	GCNNNNNNNGC	8 cut(s)	246, 249, 258, 428, 896, 1100, 1193, 1235
NdeII	GATC	4 cut(s)	195, 289, 863, 1298
NlaIII	CATG	7 cut(s)	536, 545, 650, 693, 716, 749, 796
NlaIV	GGNNCC	1 cut(s)	1057
NmuCI	GTSAC	1 cut(s)	1046
NruI	TCGCGA	1 cut(s)	207
NspI	RCATGY	2 cut(s)	693, 716
PceI	AGGCCT	3 cut(s)	157, 183, 1187
PctI	GAATGC	1 cut(s)	862
PdmI	GAANNNNTTC	2 cut(s)	899, 1086
PfeI	GAWTC	3 cut(s)	582, 928, 1148
PinAI	ACCGGT	1 cut(s)	552
PkrI	GCNGC	7 cut(s)	239, 242, 251, 703, 1013, 1037, 1240
PleI	GAGTC	1 cut(s)	826
PpsI	GAGTC	1 cut(s)	826
PpuMI	RGGWCCY	1 cut(s)	1055
Psp5II	RGGWCCY	1 cut(s)	1055
Psp6I	CCWGG	1 cut(s)	1058
PspFI	CCCAGC	1 cut(s)	937
PspGI	CCWGG	1 cut(s)	1058
PspN4I	GGNNCC	1 cut(s)	1057
PspPI	GGNCC	2 cut(s)	343, 1055
PspPPI	RGGWCCY	1 cut(s)	1055
PstI	CTGCAG	1 cut(s)	1105
PstNI	CAGNNNCTG	1 cut(s)	937
PsuI	RGATCY	1 cut(s)	863
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	2 cut(s)	557, 572
RsaNI	GTAC	2 cut(s)	556, 571
SaqAI	TTAA	7 cut(s)	383, 447, 492, 600, 671, 873, 1043
SatI	GCNGC	7 cut(s)	238, 241, 250, 702, 1012, 1036, 1239
Sau3AI	GATC	4 cut(s)	195, 289, 863, 1298
Sau96I	GGNCC	2 cut(s)	343, 1055
SchI	GAGTC	1 cut(s)	826
ScrFI	CCNGG	1 cut(s)	1060
SfaNI	GCATC	6 cut(s)	139, 252, 418, 463, 728, 898
SfcI	CTRYAG	1 cut(s)	1101
SinI	GGWCC	2 cut(s)	343, 1055
SmlI	CTYRAG	7 cut(s)	79, 141, 185, 338, 436, 446, 1244
SmoI	CTYRAG	7 cut(s)	79, 141, 185, 338, 436, 446, 1244
SseBI	AGGCCT	3 cut(s)	157, 183, 1187
SspMI	CTAG	1 cut(s)	780
StuI	AGGCCT	3 cut(s)	157, 183, 1187
StyD4I	CCNGG	1 cut(s)	1058
StyI	CCWWGG	1 cut(s)	1188
TaaI	ACNGT	3 cut(s)	271, 560, 567
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	576
TatI	WGTACW	1 cut(s)	570
TfiI	GAWTC	3 cut(s)	582, 928, 1148
Tru1I	TTAA	7 cut(s)	383, 447, 492, 600, 671, 873, 1043
Tru9I	TTAA	7 cut(s)	383, 447, 492, 600, 671, 873, 1043
TscAI	CASTG	1 cut(s)	897
TseFI	GTSAC	1 cut(s)	1046
TseI	GCWGC	7 cut(s)	237, 240, 249, 701, 1011, 1035, 1238
Tsp45I	GTSAC	1 cut(s)	1046
TspDTI	ATGAA	6 cut(s)	95, 150, 315, 522, 781, 1143
TspRI	CASTG	1 cut(s)	897
Vha464I	CTTAAG	1 cut(s)	446
VpaK11BI	GGWCC	2 cut(s)	343, 1055
XagI	CCTNNNNNAGG	1 cut(s)	1311
XapI	RAATTY	4 cut(s)	99, 798, 1199, 1221
XceI	RCATGY	2 cut(s)	693, 716
XmiI	GTMKAC	3 cut(s)	549, 562, 594
XmnI	GAANNNNTTC	2 cut(s)	899, 1086
XspI	CTAG	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.