Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011895

Physical Location & Seq

Genomic Coordinates Reverse (-)

16891101 .. 16895085

Gene Structure 3985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG203000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGCTTACATCAAAACGAGAATCACTAGATAGGGATATAGTGATTTCGAGAGGCAGTGGAGATGGAGAGGATGATAAACCCTCATCAAGTTTAGGTAAACCTAAAAGTATTCATCCTCCCATTGAAAGCCATTGGCATTTCCCTGCGCCTCAAGATAGCAAAAAGCCTTCATCTTCAATGTCGAACTTGGGATTCAAAAAGTTCCGTGAGTCGTTCAAGAAACTTGGAGGGAGTAGTAGCAAGAGCATGAAAATGGTTCTTGCAGGAGTTCGTGATCCGAAAGATCAAAAGCTTGTTGACTCTTTTCGAGAACTGCTGTTCCTCGAGGGTCAGCTTCCTTCACAGCACCAGGATTATCATACACTCTTGCGGTTTCTTCGAATGAGGGACTTTGATCTTGCTAAAGCAAAAGATGCCTTCTTTACTTATCTCAAGTGGCGTGAGGATTATAGGGTTGACGCAATTCCAAAAGAGTTCAAGTTTGAGGAATATGAGGCAGTTAAGAAGTGCTATCCTCATGGATTCCACGGGGTAGACCGATATGGTAGACCAGTATACATAGAAAGGATTGGGATGGTAGACCTTAACAAGCTACTGCAAGTAACTACACTTGAAAGATTTACAAAGTATCATGTGTCAGAACAAGAGAAAACATTGAATGTGAGATACCCTACATGCTCCATTGCAGCTAAGAAGCACGTAGCATCTACAACAAGTATCTTAGATGTGCATGGAGTGGGATTGGCAAATTTCTCGAAGCCTGCTCGATATCTCTTTATGGAAATTCAGAAGATTGATAGCAATTACTACCCAGAGACTCTAAATCGCCTGTTTATTGTGAATGCTGGAAATGGGTTTAAGATGCTGTGGAAAGCAGTGGCAGCTTTCCTTGATGCACGAACATTAGCAAAGATTCGAGTGCTGGGATACAATTATCAGAGTGACTTGCTTGAAGTAATTGATCAAAGTAATTTGCCGACATTTCTGGGTGGAAGCTGCACTTGTTCTGAATATGGGGGCTGCCTTTTAAGTGACAGAGGACCCTGGAACAATCCGGAGATTACAGATGTGCTTCAGGCAATCTCTGCAGGCAATGAGGTAACCGGTAATGAAGAATACAGTAATGAGGCTTCAGAAGAGCCGCCGATGCAAAATAGGAAAATCCAAGTTTTAGAAGCAGCACTTCAAGACGCCAAGAAAAAAATTGAAGCATTAGAAGCTGCACTTGAGGACACCAAGAATGTCTTGAAAGAACTTGTGCAGCATGTAGAAGAGTTGAGATCAACTTCTTGGGAAGTACATTGCGGTTCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

438

Amino Acids

49.71

Weight (kDa)

7.19

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO	PF00650	171 - 331	1.9e-26	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47510 AT5G47510 AT5G47510 AT5G47510
fragaria_vesca	FvH4_5g18760 FvH4_5g18760
malus_domestica	MD00G1043800.v1.1
prunus_persica	Prupe.5G071000_v2.0.a1
pyrus_communis	pycom976g00060
rosa_chinensis	RchiOBHm_Chr7g0203101
rosa_laevigata	RLG00000003552
rosa_multiflora	Rmu_sc0004999.1_g000010
rosa_roxburghii	Rroxscaffold_3G00254070
rosa_rugosa	Rorug07G0074600
rosa_samantha	Rh7AG203400 Rh7BG203000 Rh7CG214100 Rh7DG210100
rosa_wichuraiana	Rw7G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	323
AccI	GTMKAC	4 cut(s)	534, 547, 555, 579
AccIII	TCCGGA	1 cut(s)	1054
AciI	CCGC	3 cut(s)	370, 1142, 1305
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	748, 783
AcuI	CTGAAG	2 cut(s)	1058, 1116
AcyI	GRCGYC	1 cut(s)	1191
AfaI	GTAC	1 cut(s)	1299
AgeI	ACCGGT	1 cut(s)	1103
AjnI	CCWGG	2 cut(s)	348, 1043
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	7 cut(s)	292, 334, 592, 689, 884, 996, 1220
AluI	AGCT	7 cut(s)	292, 334, 592, 689, 884, 996, 1220
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	1054
ApeKI	GCWGC	7 cut(s)	686, 881, 996, 1020, 1178, 1220, 1261
ApoI	RAATTY	2 cut(s)	748, 783
AsiGI	ACCGGT	1 cut(s)	1103
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	1040
AsuII	TTCGAA	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	1040
BarI	GAAGNNNNNNTAC	2 cut(s)	1114, 1146
BbvI	GCAGC	7 cut(s)	698, 893, 983, 1007, 1190, 1207, 1273
BccI	CCATC	2 cut(s)	56, 568
BcgI	CGANNNNNNTGC	2 cut(s)	735, 769
BciT130I	CCWGG	2 cut(s)	350, 1045
BciVI	GTATCC	1 cut(s)	920
BclI	TGATCA	1 cut(s)	961
BcoDI	GTCTC	1 cut(s)	809
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	1086
BfuI	GTATCC	1 cut(s)	920
BisI	GCNGC	8 cut(s)	687, 882, 997, 1021, 1142, 1179, 1221, 1262
BlsI	GCNGC	8 cut(s)	688, 883, 998, 1022, 1143, 1180, 1222, 1263
Bme1390I	CCNGG	2 cut(s)	350, 1045
Bme18I	GGWCC	1 cut(s)	1040
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	1040
BmiI	GGNNCC	1 cut(s)	1042
BmrFI	CCNGG	2 cut(s)	350, 1045
BmsI	GCATC	5 cut(s)	403, 713, 852, 883, 1137
Bpu14I	TTCGAA	1 cut(s)	379
BpuEI	CTTGAG	3 cut(s)	135, 416, 1247
BsaAI	YACGTR	1 cut(s)	700
BsaHI	GRCGYC	1 cut(s)	1191
BsaJI	CCNNGG	2 cut(s)	526, 1043
BsaWI	WCCGGW	2 cut(s)	1054, 1103
Bse118I	RCCGGY	1 cut(s)	1103
Bse1I	ACTGG	1 cut(s)	551
Bse3DI	GCAATG	3 cut(s)	681, 1099, 1300
BseAI	TCCGGA	1 cut(s)	1054
BseBI	CCWGG	2 cut(s)	350, 1045
BseDI	CCNNGG	2 cut(s)	526, 1043
BseGI	GGATG	3 cut(s)	76, 112, 579
BseMI	GCAATG	3 cut(s)	681, 1099, 1300
BseNI	ACTGG	1 cut(s)	551
BseXI	GCAGC	7 cut(s)	698, 893, 983, 1007, 1190, 1207, 1273
BseYI	CCCAGC	1 cut(s)	922
BsgI	GTGCAG	3 cut(s)	982, 1206, 1280
BshTI	ACCGGT	1 cut(s)	1103
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	2 cut(s)	1055, 1104
BslFI	GGGAC	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	809
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	847
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	379
Bsp13I	TCCGGA	1 cut(s)	1054
Bsp143I	GATC	5 cut(s)	274, 283, 394, 961, 1280
BspACI	CCGC	3 cut(s)	370, 1142, 1305
BspEI	TCCGGA	1 cut(s)	1054
BspLI	GGNNCC	1 cut(s)	1042
BspMAI	CTGCAG	1 cut(s)	1090
BspPI	GGATC	1 cut(s)	269
BspQI	GCTCTTC	1 cut(s)	1131
BspT104I	TTCGAA	1 cut(s)	379
BsrDI	GCAATG	3 cut(s)	681, 1099, 1300
BsrFI	RCCGGY	1 cut(s)	1103
BsrI	ACTGG	1 cut(s)	551
BssAI	RCCGGY	1 cut(s)	1103
BssECI	CCNNGG	2 cut(s)	526, 1043
BssMI	GATC	5 cut(s)	274, 283, 394, 961, 1280
BssNAI	GTATAC	1 cut(s)	556
BssNI	GRCGYC	1 cut(s)	1191
Bst1107I	GTATAC	1 cut(s)	556
Bst2UI	CCWGG	2 cut(s)	350, 1045
Bst4CI	ACNGT	1 cut(s)	1121
Bst6I	CTCTTC	2 cut(s)	1131, 1266
BstACI	GRCGYC	1 cut(s)	1191
BstAPI	GCANNNNNTGC	2 cut(s)	413, 1085
BstBAI	YACGTR	1 cut(s)	700
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	762, 1090
BstDEI	CTNAG	2 cut(s)	690, 721
BstDSI	CCRYGG	1 cut(s)	526
BstEII	GGTNACC	1 cut(s)	1099
BstF5I	GGATG	3 cut(s)	76, 112, 579
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	5 cut(s)	277, 286, 397, 964, 1283
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	5 cut(s)	274, 283, 394, 961, 1280
BstMWI	GCNNNNNNNGC	5 cut(s)	413, 881, 1085, 1147, 1217
BstNI	CCWGG	2 cut(s)	350, 1045
BstNSI	RCATGY	2 cut(s)	678, 1268
BstPI	GGTNACC	1 cut(s)	1099
BstSCI	CCNGG	2 cut(s)	348, 1043
BstSFI	CTRYAG	1 cut(s)	1086
BstV1I	GCAGC	7 cut(s)	698, 893, 983, 1007, 1190, 1207, 1273
BstZ17I	GTATAC	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	920
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	76, 112, 579
BtsI	GCAGTG	2 cut(s)	61, 882
BtsIMutI	CAGTG	2 cut(s)	61, 882
Cac8I	GCNNGC	2 cut(s)	762, 1090
CfoI	GCGC	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	1103
Cfr13I	GGNCC	1 cut(s)	1040
CseI	GACGC	2 cut(s)	467, 1199
Csp6I	GTAC	1 cut(s)	1298
CspAI	ACCGGT	1 cut(s)	1103
CviAII	CATG	6 cut(s)	247, 518, 632, 675, 731, 1265
CviQI	GTAC	1 cut(s)	1298
DdeI	CTNAG	2 cut(s)	690, 721
DpnI	GATC	5 cut(s)	276, 285, 396, 963, 1282
DpnII	GATC	5 cut(s)	274, 283, 394, 961, 1280
Eam1104I	CTCTTC	2 cut(s)	1131, 1266
EarI	CTCTTC	2 cut(s)	1131, 1266
Eco32I	GATATC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	1040
Eco57I	CTGAAG	2 cut(s)	1058, 1116
Eco88I	CYCGRG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	1099
EcoO109I	RGGNCCY	1 cut(s)	1040
EcoO65I	GGTNACC	1 cut(s)	1099
EcoRII	CCWGG	2 cut(s)	348, 1043
EcoRV	GATATC	1 cut(s)	770
FaeI	CATG	6 cut(s)	250, 521, 635, 678, 734, 1268
FalI	AAGNNNNNCTT	8 cut(s)	985, 1017, 1167, 1199, 1209, 1241, 1229, 1261
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	6 cut(s)	246, 517, 631, 674, 730, 1264
FbaI	TGATCA	1 cut(s)	961
FblI	GTMKAC	4 cut(s)	534, 547, 555, 579
Fnu4HI	GCNGC	8 cut(s)	687, 882, 997, 1021, 1142, 1179, 1221, 1262
FokI	GGATG	3 cut(s)	83, 99, 586
Fsp4HI	GCNGC	8 cut(s)	687, 882, 997, 1021, 1142, 1179, 1221, 1262
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	8 cut(s)	687, 882, 997, 1021, 1142, 1179, 1221, 1262
GsaI	CCCAGC	1 cut(s)	926
HapII	CCGG	2 cut(s)	1055, 1104
HgaI	GACGC	2 cut(s)	467, 1199
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	1191
Hin1II	CATG	6 cut(s)	250, 521, 635, 678, 734, 1268
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	2 cut(s)	298, 457
HindII	GTYRAC	2 cut(s)	298, 457
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	7 cut(s)	20, 192, 209, 299, 522, 817, 913
HpaII	CCGG	2 cut(s)	1055, 1104
Hpy166II	GTNNAC	7 cut(s)	98, 298, 457, 535, 548, 556, 580
Hpy188I	TCNGA	6 cut(s)	279, 640, 789, 939, 1009, 1135
Hpy188III	TCNNGA	9 cut(s)	48, 152, 217, 272, 308, 754, 1055, 1187, 1246
Hpy8I	GTNNAC	7 cut(s)	98, 298, 457, 535, 548, 556, 580
HpyAV	CCTTC	3 cut(s)	177, 348, 427
HpyCH4III	ACNGT	1 cut(s)	1121
HpyCH4IV	ACGT	1 cut(s)	699
HpyF10VI	GCNNNNNNNGC	5 cut(s)	413, 881, 1085, 1147, 1217
HpyF3I	CTNAG	2 cut(s)	690, 721
HpySE526I	ACGT	1 cut(s)	699
Hsp92I	GRCGYC	1 cut(s)	1191
Hsp92II	CATG	6 cut(s)	250, 521, 635, 678, 734, 1268
HspAI	GCGC	1 cut(s)	146
Kpn2I	TCCGGA	1 cut(s)	1054
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	5 cut(s)	274, 283, 394, 961, 1280
LguI	GCTCTTC	1 cut(s)	1131
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	7 cut(s)	698, 893, 983, 1007, 1190, 1207, 1273
LweI	GCATC	5 cut(s)	403, 713, 852, 883, 1137
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	699
MaeIII	GTNAC	4 cut(s)	601, 941, 1031, 1099
MalI	GATC	5 cut(s)	276, 285, 396, 963, 1282
MboI	GATC	5 cut(s)	274, 283, 394, 961, 1280
MboII	GAAGA	6 cut(s)	165, 368, 802, 1124, 1148, 1283
MluCI	AATT	9 cut(s)	462, 748, 783, 802, 931, 957, 970, 1203, 1312
MlyI	GAGTC	3 cut(s)	218, 293, 811
MroI	TCCGGA	1 cut(s)	1054
MseI	TTAA	4 cut(s)	501, 585, 858, 1028
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	2 cut(s)	1055, 1104
MspR9I	CCNGG	2 cut(s)	350, 1045
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	2 cut(s)	350, 1045
MwoI	GCNNNNNNNGC	5 cut(s)	413, 881, 1085, 1147, 1217
NdeII	GATC	5 cut(s)	274, 283, 394, 961, 1280
NlaIII	CATG	6 cut(s)	250, 521, 635, 678, 734, 1268
NlaIV	GGNNCC	1 cut(s)	1042
NmuCI	GTSAC	2 cut(s)	941, 1031
NspI	RCATGY	2 cut(s)	678, 1268
NspV	TTCGAA	1 cut(s)	379
PaeR7I	CTCGAG	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	1131
PctI	GAATGC	1 cut(s)	847
PfeI	GAWTC	4 cut(s)	20, 192, 522, 913
PinAI	ACCGGT	1 cut(s)	1103
PkrI	GCNGC	8 cut(s)	688, 883, 998, 1022, 1143, 1180, 1222, 1263
PleI	GAGTC	3 cut(s)	217, 293, 811
PpsI	GAGTC	3 cut(s)	217, 293, 811
Ppu21I	YACGTR	1 cut(s)	700
PpuMI	RGGWCCY	1 cut(s)	1040
Psp5II	RGGWCCY	1 cut(s)	1040
Psp6I	CCWGG	2 cut(s)	348, 1043
PspEI	GGTNACC	1 cut(s)	1099
PspFI	CCCAGC	1 cut(s)	922
PspGI	CCWGG	2 cut(s)	348, 1043
PspN4I	GGNNCC	1 cut(s)	1042
PspPI	GGNCC	1 cut(s)	1040
PspPPI	RGGWCCY	1 cut(s)	1040
PspXI	VCTCGAGB	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	1090
RsaI	GTAC	1 cut(s)	1299
RsaNI	GTAC	1 cut(s)	1298
RseI	CAYNNNNRTG	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	1131
SaqAI	TTAA	4 cut(s)	501, 585, 858, 1028
SatI	GCNGC	8 cut(s)	687, 882, 997, 1021, 1142, 1179, 1221, 1262
Sau3AI	GATC	5 cut(s)	274, 283, 394, 961, 1280
Sau96I	GGNCC	1 cut(s)	1040
SchI	GAGTC	3 cut(s)	218, 293, 811
ScrFI	CCNGG	2 cut(s)	350, 1045
SfaNI	GCATC	5 cut(s)	403, 713, 852, 883, 1137
SfcI	CTRYAG	1 cut(s)	1086
Sfr274I	CTCGAG	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	379
SinI	GGWCC	1 cut(s)	1040
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	4 cut(s)	150, 323, 431, 1226
SmoI	CTYRAG	4 cut(s)	150, 323, 431, 1226
Sse9I	AATT	9 cut(s)	462, 748, 783, 802, 931, 957, 970, 1203, 1312
SsiI	CCGC	3 cut(s)	370, 1142, 1305
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	348, 1043
TaaI	ACNGT	1 cut(s)	1121
TaiI	ACGT	1 cut(s)	702
TaqI	TCGA	8 cut(s)	47, 182, 307, 324, 379, 755, 766, 916
TaqII	GACCGA	1 cut(s)	552
TasI	AATT	9 cut(s)	462, 748, 783, 802, 931, 957, 970, 1203, 1312
TatI	WGTACW	1 cut(s)	1297
TauI	GCSGC	1 cut(s)	1144
TfiI	GAWTC	4 cut(s)	20, 192, 522, 913
Tru1I	TTAA	4 cut(s)	501, 585, 858, 1028
Tru9I	TTAA	4 cut(s)	501, 585, 858, 1028
TscAI	CASTG	2 cut(s)	61, 882
TseFI	GTSAC	2 cut(s)	941, 1031
TseI	GCWGC	7 cut(s)	686, 881, 996, 1020, 1178, 1220, 1261
Tsp45I	GTSAC	2 cut(s)	941, 1031
TspDTI	ATGAA	4 cut(s)	101, 159, 263, 1125
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	61, 882
VpaK11BI	GGWCC	1 cut(s)	1040
XapI	RAATTY	2 cut(s)	748, 783
XceI	RCATGY	2 cut(s)	678, 1268
XhoI	CTCGAG	1 cut(s)	323
XmiI	GTMKAC	4 cut(s)	534, 547, 555, 579
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.