Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004999.1

Orthogroup ID

OG0011895

Physical Location & Seq

Genomic Coordinates Reverse (-)

30841 .. 34497

Gene Structure 3657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004999.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

atgcttacatcaaaacgagaatcactagatagggatatagtgatttcgagaggcagtggagatggagaggatggtaaaccctcatcaagtttaggtaaacctaaacctattcatccttccattgaaacccattggcatttacctgcgcctcaagatagcaaaaagccttcatcttcaatgtcgaacttgggattcaaaaagttccgtgactcgttcaagaaacttggagggagtagtaggaagagcatgaaaatggttcttgcaggagttcgtgatccgaaagatcaaaagcttgttgactcttttcgagaactgctgttcctcgagggtcagcttccttcacagcaccaggattatcatacactcttgcggtttcttcgaatgagggactttgatcttgctaaagcaaaagaggccttctttacttatctcaagtggcgtgaggattatagggttgacgcaattccaaaagagttcaagtttgaggaatatgaggcagttaagaagtgctatcctcatggattccacggggtagaccgatatggtagaccagtatacatcgaaaggattgggatggtagaccttaacaagctactgcaagtaactacacttgaaagatttacaaagtatcatgtgtcagaacaagagaaaacattgaatgtgagataccctacttgctccattgcagctaagaagcatgtagcatctacaacaagtatcttagatgtgcatggagtgggattggcaaatttctcgaagcctgctcgatatctctttatggaaattcagaagattgatagcaattactacccagagactctaaatcgcctgtttattgtgaatgctggaaatgggtttaagatgctgtggaaagcagtgagcgctttccttgatgcacgaacattagcaaagattcgagtgctgggatacaattatcagagtgacttgcttgaagtaattgatcaaagtaatttgccgacatttctgggtggaagctgcacttgttctgaatatgggggctgccttttaagtgacagaggaccctggaacaatccggagattacagatgtgcttcaggcaatctctgcaggcaatgaggtaaccgataatgaagaatatagtaatgaggcttcagaagagccgccgatgcaaaataggaaaatcctagttctagaagcagcacttcaagacgccaagaaaaaaattgaagcattagaagctgcacttgaggacaccaagaatgtcttgaaagaacttgtgcagcatgtagaagagttgagatcaacttcttgggaagtacattgcacttcaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO

Protein Analysis

438

Amino Acids

49.8

Weight (kDa)

7.64

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011895)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47510 AT5G47510 AT5G47510 AT5G47510
fragaria_vesca	FvH4_5g18760 FvH4_5g18760
malus_domestica	MD00G1043800.v1.1
prunus_persica	Prupe.5G071000_v2.0.a1
pyrus_communis	pycom976g00060
rosa_chinensis	RchiOBHm_Chr7g0203101
rosa_laevigata	RLG00000003552
rosa_multiflora	Rmu_sc0004999.1_g000010
rosa_roxburghii	Rroxscaffold_3G00254070
rosa_rugosa	Rorug07G0074600
rosa_samantha	Rh7AG203400 Rh7BG203000 Rh7CG214100 Rh7DG210100
rosa_wichuraiana	Rw7G017750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	151
AccI	GTMKAC	4 cut(s)	534, 547, 555, 579
AccIII	TCCGGA	1 cut(s)	1054
AciI	CCGC	2 cut(s)	370, 1142
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	748, 783
AcuI	CTGAAG	2 cut(s)	1058, 1116
AcyI	GRCGYC	1 cut(s)	1191
AfaI	GTAC	1 cut(s)	1299
AfeI	AGCGCT	1 cut(s)	883
AjnI	CCWGG	2 cut(s)	348, 1043
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	6 cut(s)	292, 334, 592, 689, 996, 1220
AluI	AGCT	6 cut(s)	292, 334, 592, 689, 996, 1220
Alw26I	GTCTC	1 cut(s)	809
AlwI	GGATC	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	1054
Aor51HI	AGCGCT	1 cut(s)	883
AoxI	GGCC	1 cut(s)	414
ApeKI	GCWGC	6 cut(s)	686, 996, 1020, 1178, 1220, 1261
ApoI	RAATTY	2 cut(s)	748, 783
AspLEI	GCGC	2 cut(s)	148, 884
AspS9I	GGNCC	1 cut(s)	1040
AsuII	TTCGAA	1 cut(s)	379
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	1040
BarI	GAAGNNNNNNTAC	2 cut(s)	1114, 1146
BbvI	GCAGC	6 cut(s)	698, 983, 1007, 1190, 1207, 1273
BccI	CCATC	3 cut(s)	56, 65, 568
BcgI	CGANNNNNNTGC	2 cut(s)	735, 769
BciT130I	CCWGG	2 cut(s)	350, 1045
BciVI	GTATCC	1 cut(s)	920
BclI	TGATCA	1 cut(s)	961
BcoDI	GTCTC	1 cut(s)	809
BfaI	CTAG	3 cut(s)	26, 1166, 1172
BfmI	CTRYAG	1 cut(s)	1086
BfoI	RGCGCY	1 cut(s)	885
BfuAI	ACCTGC	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	920
BisI	GCNGC	7 cut(s)	687, 997, 1021, 1142, 1179, 1221, 1262
BlsI	GCNGC	7 cut(s)	688, 998, 1022, 1143, 1180, 1222, 1263
Bme1390I	CCNGG	2 cut(s)	350, 1045
Bme18I	GGWCC	1 cut(s)	1040
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	1040
BmiI	GGNNCC	1 cut(s)	1042
BmrFI	CCNGG	2 cut(s)	350, 1045
BmsI	GCATC	4 cut(s)	713, 852, 883, 1137
Bpu14I	TTCGAA	1 cut(s)	379
BpuEI	CTTGAG	3 cut(s)	135, 416, 1247
BsaHI	GRCGYC	1 cut(s)	1191
BsaJI	CCNNGG	2 cut(s)	526, 1043
BsaWI	WCCGGW	1 cut(s)	1054
Bse1I	ACTGG	1 cut(s)	551
Bse3DI	GCAATG	3 cut(s)	681, 1099, 1300
BseAI	TCCGGA	1 cut(s)	1054
BseBI	CCWGG	2 cut(s)	350, 1045
BseDI	CCNNGG	2 cut(s)	526, 1043
BseGI	GGATG	3 cut(s)	76, 112, 579
BseMI	GCAATG	3 cut(s)	681, 1099, 1300
BseNI	ACTGG	1 cut(s)	551
BseXI	GCAGC	6 cut(s)	698, 983, 1007, 1190, 1207, 1273
BseYI	CCCAGC	1 cut(s)	922
BsgI	GTGCAG	3 cut(s)	982, 1206, 1280
BshFI	GGCC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	1 cut(s)	1055
BslFI	GGGAC	1 cut(s)	401
BsmAI	GTCTC	1 cut(s)	809
BsmFI	GGGAC	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	847
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	379
Bsp13I	TCCGGA	1 cut(s)	1054
Bsp143I	GATC	5 cut(s)	274, 283, 394, 961, 1280
BspACI	CCGC	2 cut(s)	370, 1142
BspANI	GGCC	1 cut(s)	416
BspEI	TCCGGA	1 cut(s)	1054
BspLI	GGNNCC	1 cut(s)	1042
BspMAI	CTGCAG	1 cut(s)	1090
BspMI	ACCTGC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	269
BspQI	GCTCTTC	2 cut(s)	236, 1131
BspT104I	TTCGAA	1 cut(s)	379
BsrDI	GCAATG	3 cut(s)	681, 1099, 1300
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	2 cut(s)	526, 1043
BssMI	GATC	5 cut(s)	274, 283, 394, 961, 1280
BssNAI	GTATAC	1 cut(s)	556
BssNI	GRCGYC	1 cut(s)	1191
Bst1107I	GTATAC	1 cut(s)	556
Bst2UI	CCWGG	2 cut(s)	350, 1045
Bst6I	CTCTTC	3 cut(s)	236, 1131, 1266
BstACI	GRCGYC	1 cut(s)	1191
BstAPI	GCANNNNNTGC	1 cut(s)	1085
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	762, 1090
BstDEI	CTNAG	2 cut(s)	690, 721
BstDSI	CCRYGG	1 cut(s)	526
BstEII	GGTNACC	1 cut(s)	1099
BstF5I	GGATG	3 cut(s)	76, 112, 579
BstH2I	RGCGCY	1 cut(s)	885
BstHHI	GCGC	2 cut(s)	148, 884
BstKTI	GATC	5 cut(s)	277, 286, 397, 964, 1283
BstMAI	GTCTC	1 cut(s)	809
BstMBI	GATC	5 cut(s)	274, 283, 394, 961, 1280
BstMWI	GCNNNNNNNGC	5 cut(s)	413, 881, 1085, 1147, 1217
BstNI	CCWGG	2 cut(s)	350, 1045
BstNSI	RCATGY	2 cut(s)	701, 1268
BstPI	GGTNACC	1 cut(s)	1099
BstSCI	CCNGG	2 cut(s)	348, 1043
BstSFI	CTRYAG	1 cut(s)	1086
BstV1I	GCAGC	6 cut(s)	698, 983, 1007, 1190, 1207, 1273
BstZ17I	GTATAC	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	920
BsuRI	GGCC	1 cut(s)	416
BtgI	CCRYGG	1 cut(s)	526
BtsCI	GGATG	3 cut(s)	76, 112, 579
BtsI	GCAGTG	2 cut(s)	61, 882
BtsIMutI	CAGTG	2 cut(s)	61, 882
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	2 cut(s)	762, 1090
CfoI	GCGC	2 cut(s)	148, 884
Cfr13I	GGNCC	1 cut(s)	1040
CseI	GACGC	2 cut(s)	467, 1199
Csp6I	GTAC	1 cut(s)	1298
CviAII	CATG	6 cut(s)	247, 518, 632, 698, 731, 1265
CviQI	GTAC	1 cut(s)	1298
DdeI	CTNAG	2 cut(s)	690, 721
DpnI	GATC	5 cut(s)	276, 285, 396, 963, 1282
DpnII	GATC	5 cut(s)	274, 283, 394, 961, 1280
Eam1104I	CTCTTC	3 cut(s)	236, 1131, 1266
EarI	CTCTTC	3 cut(s)	236, 1131, 1266
Eco147I	AGGCCT	1 cut(s)	416
Eco32I	GATATC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	1040
Eco47III	AGCGCT	1 cut(s)	883
Eco57I	CTGAAG	2 cut(s)	1058, 1116
Eco88I	CYCGRG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	1099
EcoO109I	RGGNCCY	1 cut(s)	1040
EcoO65I	GGTNACC	1 cut(s)	1099
EcoRII	CCWGG	2 cut(s)	348, 1043
EcoRV	GATATC	1 cut(s)	770
FaeI	CATG	6 cut(s)	250, 521, 635, 701, 734, 1268
FalI	AAGNNNNNCTT	8 cut(s)	985, 1017, 1167, 1199, 1209, 1241, 1229, 1261
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	6 cut(s)	246, 517, 631, 697, 730, 1264
FbaI	TGATCA	1 cut(s)	961
FblI	GTMKAC	4 cut(s)	534, 547, 555, 579
Fnu4HI	GCNGC	7 cut(s)	687, 997, 1021, 1142, 1179, 1221, 1262
FokI	GGATG	3 cut(s)	83, 99, 586
Fsp4HI	GCNGC	7 cut(s)	687, 997, 1021, 1142, 1179, 1221, 1262
FspBI	CTAG	3 cut(s)	26, 1166, 1172
GlaI	GCGC	2 cut(s)	147, 883
GluI	GCNGC	7 cut(s)	687, 997, 1021, 1142, 1179, 1221, 1262
GsaI	CCCAGC	1 cut(s)	926
HaeII	RGCGCY	1 cut(s)	885
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	1 cut(s)	1055
HgaI	GACGC	2 cut(s)	467, 1199
HhaI	GCGC	2 cut(s)	148, 884
Hin1I	GRCGYC	1 cut(s)	1191
Hin1II	CATG	6 cut(s)	250, 521, 635, 701, 734, 1268
Hin6I	GCGC	2 cut(s)	146, 882
HinP1I	GCGC	2 cut(s)	146, 882
HincII	GTYRAC	2 cut(s)	298, 457
HindII	GTYRAC	2 cut(s)	298, 457
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	7 cut(s)	20, 192, 209, 299, 522, 817, 913
HpaII	CCGG	1 cut(s)	1055
Hpy166II	GTNNAC	8 cut(s)	77, 98, 298, 457, 535, 548, 556, 580
Hpy188I	TCNGA	6 cut(s)	279, 640, 789, 939, 1009, 1135
Hpy8I	GTNNAC	8 cut(s)	77, 98, 298, 457, 535, 548, 556, 580
HpyAV	CCTTC	4 cut(s)	126, 177, 348, 427
HpyF10VI	GCNNNNNNNGC	5 cut(s)	413, 881, 1085, 1147, 1217
HpyF3I	CTNAG	2 cut(s)	690, 721
Hsp92I	GRCGYC	1 cut(s)	1191
Hsp92II	CATG	6 cut(s)	250, 521, 635, 701, 734, 1268
HspAI	GCGC	2 cut(s)	146, 882
Kpn2I	TCCGGA	1 cut(s)	1054
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	5 cut(s)	274, 283, 394, 961, 1280
LguI	GCTCTTC	2 cut(s)	236, 1131
LmnI	GCTCC	1 cut(s)	683
Lsp1109I	GCAGC	6 cut(s)	698, 983, 1007, 1190, 1207, 1273
LweI	GCATC	4 cut(s)	713, 852, 883, 1137
MaeI	CTAG	3 cut(s)	26, 1166, 1172
MaeIII	GTNAC	5 cut(s)	206, 601, 941, 1031, 1099
MalI	GATC	5 cut(s)	276, 285, 396, 963, 1282
MboI	GATC	5 cut(s)	274, 283, 394, 961, 1280
MboII	GAAGA	7 cut(s)	165, 253, 368, 802, 1124, 1148, 1283
MluCI	AATT	9 cut(s)	462, 748, 783, 802, 931, 957, 970, 1203, 1312
MlyI	GAGTC	3 cut(s)	203, 293, 811
MroI	TCCGGA	1 cut(s)	1054
MseI	TTAA	4 cut(s)	501, 585, 858, 1028
MslI	CAYNNNNRTG	1 cut(s)	251
MspI	CCGG	1 cut(s)	1055
MspR9I	CCNGG	2 cut(s)	350, 1045
Mva1269I	GAATGC	1 cut(s)	847
MvaI	CCWGG	2 cut(s)	350, 1045
MwoI	GCNNNNNNNGC	5 cut(s)	413, 881, 1085, 1147, 1217
NdeII	GATC	5 cut(s)	274, 283, 394, 961, 1280
NlaIII	CATG	6 cut(s)	250, 521, 635, 701, 734, 1268
NlaIV	GGNNCC	1 cut(s)	1042
NmuCI	GTSAC	3 cut(s)	206, 941, 1031
NspI	RCATGY	2 cut(s)	701, 1268
NspV	TTCGAA	1 cut(s)	379
PaeR7I	CTCGAG	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	416
PciSI	GCTCTTC	2 cut(s)	236, 1131
PctI	GAATGC	1 cut(s)	847
PfeI	GAWTC	4 cut(s)	20, 192, 522, 913
PkrI	GCNGC	7 cut(s)	688, 998, 1022, 1143, 1180, 1222, 1263
PleI	GAGTC	3 cut(s)	203, 293, 811
PpsI	GAGTC	3 cut(s)	203, 293, 811
PpuMI	RGGWCCY	1 cut(s)	1040
Psp5II	RGGWCCY	1 cut(s)	1040
Psp6I	CCWGG	2 cut(s)	348, 1043
PspEI	GGTNACC	1 cut(s)	1099
PspFI	CCCAGC	1 cut(s)	922
PspGI	CCWGG	2 cut(s)	348, 1043
PspN4I	GGNNCC	1 cut(s)	1042
PspPI	GGNCC	1 cut(s)	1040
PspPPI	RGGWCCY	1 cut(s)	1040
PspXI	VCTCGAGB	1 cut(s)	323
PstI	CTGCAG	1 cut(s)	1090
RsaI	GTAC	1 cut(s)	1299
RsaNI	GTAC	1 cut(s)	1298
RseI	CAYNNNNRTG	1 cut(s)	251
SapI	GCTCTTC	2 cut(s)	236, 1131
SaqAI	TTAA	4 cut(s)	501, 585, 858, 1028
SatI	GCNGC	7 cut(s)	687, 997, 1021, 1142, 1179, 1221, 1262
Sau3AI	GATC	5 cut(s)	274, 283, 394, 961, 1280
Sau96I	GGNCC	1 cut(s)	1040
SchI	GAGTC	3 cut(s)	203, 293, 811
ScrFI	CCNGG	2 cut(s)	350, 1045
SfaNI	GCATC	4 cut(s)	713, 852, 883, 1137
SfcI	CTRYAG	1 cut(s)	1086
Sfr274I	CTCGAG	1 cut(s)	323
SfuI	TTCGAA	1 cut(s)	379
SinI	GGWCC	1 cut(s)	1040
SlaI	CTCGAG	1 cut(s)	323
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	4 cut(s)	150, 323, 431, 1226
SmoI	CTYRAG	4 cut(s)	150, 323, 431, 1226
Sse9I	AATT	9 cut(s)	462, 748, 783, 802, 931, 957, 970, 1203, 1312
SseBI	AGGCCT	1 cut(s)	416
SsiI	CCGC	2 cut(s)	370, 1142
SspMI	CTAG	3 cut(s)	26, 1166, 1172
StuI	AGGCCT	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	348, 1043
TaqI	TCGA	9 cut(s)	47, 182, 307, 324, 379, 561, 755, 766, 916
TaqII	GACCGA	1 cut(s)	552
TasI	AATT	9 cut(s)	462, 748, 783, 802, 931, 957, 970, 1203, 1312
TatI	WGTACW	1 cut(s)	1297
TauI	GCSGC	1 cut(s)	1144
TfiI	GAWTC	4 cut(s)	20, 192, 522, 913
Tru1I	TTAA	4 cut(s)	501, 585, 858, 1028
Tru9I	TTAA	4 cut(s)	501, 585, 858, 1028
TscAI	CASTG	2 cut(s)	61, 882
TseFI	GTSAC	3 cut(s)	206, 941, 1031
TseI	GCWGC	6 cut(s)	686, 996, 1020, 1178, 1220, 1261
Tsp45I	GTSAC	3 cut(s)	206, 941, 1031
TspDTI	ATGAA	4 cut(s)	101, 159, 263, 1125
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	61, 882
VpaK11BI	GGWCC	1 cut(s)	1040
XapI	RAATTY	2 cut(s)	748, 783
XbaI	TCTAGA	1 cut(s)	1171
XceI	RCATGY	2 cut(s)	701, 1268
XhoI	CTCGAG	1 cut(s)	323
XmiI	GTMKAC	4 cut(s)	534, 547, 555, 579
XspI	CTAG	3 cut(s)	26, 1166, 1172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.