Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014108

Physical Location & Seq

Genomic Coordinates Reverse (-)

19301130 .. 19302117

Gene Structure 988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCGTTTGCTAGTAGCAGAAGCAGCTTCACCATTGTCCTCTGCTGCAACTCCAACATGTAACTCTCATACTTGCAGATGGAAGCCTTACTCAAACTCTACTGACTTCACAGCTAATGCATCAGTCCTTCTCATCCTTGTCATCTCTGCTCTCATTTGTGCTCTCTCTCTTTACGCTGCAATTCGTTGCTTTCTCCGACCAACCCTCGAGACTGAAGACGACCACAAGCCTGACCCTGAAGCAGCTGCTTCATCCACTCCAACAACTCCTACACTTGTCTACTCCTCCGACCTTGAACTCGCAGGAGCTGAAGCAGAGTGTGCCATTTGCTTGTCGGAATTTGAACAAGGAGAAAGCATTCAAGTGCTGGAGAAATGTCAGCATGGTTTCCATGTTAAGTGTATCCACAAATGGCTCTCTACTCGCTCCTCCTGTCCCACTTGCAGAACTTCTATCTTCTCACAACACTCTGAAACTCCTTCAAGCCACATCAATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

166

Amino Acids

17.96

Weight (kDa)

5.57

Isoelectric Point (pI)

47.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	106 - 149	9.5e-15	Ring finger domain
zf-RING_11	PF17123	106 - 135	4.7e-11	RING-like zinc finger
zf-rbx1	PF12678	106 - 149	1.7e-09	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	106 - 148	4.6e-10	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	107 - 148	2.5e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17245 AT5G47610
fragaria_vesca	FvH4_5g10181
malus_domestica	MD06G1127400.v1.1 MD10G1185300.v1.1 MD14G1142700.v1.1
prunus_persica	Prupe.5G137200_v2.0.a1
pyrus_communis	pycom06g11720
rosa_chinensis	RchiOBHm_Chr7g0188061
rosa_laevigata	RLG00000004730
rosa_multiflora	Rmu_ssc0000422.1_g000018
rosa_roxburghii	Rroxscaffold_3G00266770
rosa_rugosa	Rorug06G0487900
rosa_samantha	Rh7AG092200 Rh7BG093800 Rh7CG093100
rosa_wichuraiana	Rw7G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	3 cut(s)	234, 258, 330
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	4 cut(s)	296, 344, 362, 483
AluBI	AGCT	4 cut(s)	26, 113, 245, 308
AluI	AGCT	4 cut(s)	26, 113, 245, 308
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	203
AlwNI	CAGNNNCTG	1 cut(s)	308
Ama87I	CYCGRG	1 cut(s)	206
ApeKI	GCWGC	5 cut(s)	23, 44, 176, 242, 245
ApoI	RAATTY	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	357
AsuHPI	GGTGA	1 cut(s)	21
AvaI	CYCGRG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	5 cut(s)	31, 35, 163, 232, 254
BccI	CCATC	1 cut(s)	72
BciVI	GTATCC	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	413
BisI	GCNGC	5 cut(s)	24, 45, 177, 243, 246
BlsI	GCNGC	5 cut(s)	25, 46, 178, 244, 247
BmeT110I	CYCGRG	1 cut(s)	206
BmsI	GCATC	1 cut(s)	128
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	389
BseGI	GGATG	2 cut(s)	132, 251
BseRI	GAGGAG	2 cut(s)	274, 418
BseXI	GCAGC	5 cut(s)	31, 35, 163, 232, 254
BsiHKAI	GWGCWC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	206
BslFI	GGGAC	1 cut(s)	420
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	420
BsmI	GAATGC	1 cut(s)	357
BsoBI	CYCGRG	1 cut(s)	206
Bsp1286I	GDGCHC	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	320
BstDEI	CTNAG	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	132, 251
BstMAI	GTCTC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 320
BstNSI	RCATGY	1 cut(s)	60
BstV1I	GCAGC	5 cut(s)	31, 35, 163, 232, 254
BstV2I	GAAGAC	1 cut(s)	222
BsuI	GTATCC	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	132, 251
CaiI	CAGNNNCTG	1 cut(s)	308
CviAII	CATG	3 cut(s)	57, 383, 392
CviJI	RGCY	8 cut(s)	26, 85, 113, 229, 245, 308, 415, 486
CviKI_1	RGCY	8 cut(s)	26, 85, 113, 229, 245, 308, 415, 486
DdeI	CTNAG	1 cut(s)	498
Eco57I	CTGAAG	3 cut(s)	234, 258, 330
Eco88I	CYCGRG	1 cut(s)	206
EcoT22I	ATGCAT	1 cut(s)	121
FaeI	CATG	3 cut(s)	60, 386, 395
FaiI	YATR	4 cut(s)	58, 69, 384, 393
FaqI	GGGAC	1 cut(s)	420
FatI	CATG	3 cut(s)	56, 382, 391
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	5 cut(s)	24, 45, 177, 243, 246
FokI	GGATG	2 cut(s)	119, 238
Fsp4HI	GCNGC	5 cut(s)	24, 45, 177, 243, 246
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	5 cut(s)	24, 45, 177, 243, 246
GsuI	CTGGAG	1 cut(s)	389
Hin1II	CATG	3 cut(s)	60, 386, 395
HphI	GGTGA	1 cut(s)	21
Hpy166II	GTNNAC	1 cut(s)	280
Hpy188I	TCNGA	4 cut(s)	197, 289, 337, 472
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	137, 489
HpyCH4V	TGCA	5 cut(s)	47, 75, 119, 179, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 320
HpyF3I	CTNAG	1 cut(s)	498
Hsp92II	CATG	3 cut(s)	60, 386, 395
LmnI	GCTCC	2 cut(s)	305, 431
LpnPI	CCDG	5 cut(s)	243, 249, 288, 353, 445
Lsp1109I	GCAGC	5 cut(s)	31, 35, 163, 232, 254
LweI	GCATC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	1 cut(s)	59
MboII	GAAGA	2 cut(s)	227, 448
MhlI	GDGCHC	1 cut(s)	163
MluCI	AATT	2 cut(s)	180, 338
MmeI	TCCRAC	5 cut(s)	77, 220, 284, 312, 315
MnlI	CCTC	4 cut(s)	49, 215, 295, 439
Mph1103I	ATGCAT	1 cut(s)	121
MroXI	GAANNNNTTC	1 cut(s)	357
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	2 cut(s)	362, 492
MspA1I	CMGCKG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	23, 320
NlaIII	CATG	3 cut(s)	60, 386, 395
NsiI	ATGCAT	1 cut(s)	121
NspI	RCATGY	1 cut(s)	60
PaeR7I	CTCGAG	1 cut(s)	206
PciI	ACATGT	1 cut(s)	56
PctI	GAATGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	357
PkrI	GCNGC	5 cut(s)	25, 46, 178, 244, 247
PscI	ACATGT	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	308
PvuII	CAGCTG	1 cut(s)	245
RseI	CAYNNNNRTG	2 cut(s)	362, 492
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	5 cut(s)	24, 45, 177, 243, 246
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	5 cut(s)	28, 115, 247, 294, 310
SfaNI	GCATC	1 cut(s)	128
Sfr274I	CTCGAG	1 cut(s)	206
SlaI	CTCGAG	1 cut(s)	206
SmiMI	CAYNNNNRTG	2 cut(s)	362, 492
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	180, 338
SspMI	CTAG	1 cut(s)	11
TaqI	TCGA	1 cut(s)	207
TasI	AATT	2 cut(s)	180, 338
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TseI	GCWGC	5 cut(s)	23, 44, 176, 242, 245
TspDTI	ATGAA	1 cut(s)	240
XapI	RAATTY	1 cut(s)	338
XceI	RCATGY	1 cut(s)	60
XhoI	CTCGAG	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	357
XspI	CTAG	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.