Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0014108

Physical Location & Seq

Genomic Coordinates Reverse (-)

7016600 .. 7017073

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG093100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTCCTCATCATCCTCCTCTCGGCTCTCATCTGCGCCCTCGGCCTCAACGCCGCCATCCGCTGCTTCCTCCGCGGCACTCACCTAGTGGAGGAGCAGCTCGACCGCCGCAGCAGCAGCAACCCTACCCAGACGCATCACGAGTTGGCTCGCGTGCAGCTCAAGACCAATGCGGCAGCGGCTCCCTGCTTTGATGGGGGACCCACGCTGGTGTACTCGCCGGAGCTGAAGGCGGAGCTGGCGGGGGCAGCGGCGGAGTGCGCCATTTGCTTGTCGGAGTTCGTGGATGGGGAGGGGATAAGGGTGTTGGAGAGGTGTAAGCATGGGTTCCACGCCCACTGTATACAGGCCTGGCTGTCTTCTCACTCTTCTTGTCCAACGTGCCGTCGCACGTGCCTCCCTCCCTCCCCTCCGCCGCCGCAATCCACCGACGTGGAGGACCAACCGCCCTTGCCGGAAAGTATTGCTCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

157

Amino Acids

16.86

Weight (kDa)

5.94

Isoelectric Point (pI)

61.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	86 - 129	1.6e-14	Ring finger domain
zf-RING_11	PF17123	86 - 115	7.5e-11	RING-like zinc finger
zf-C3HC4_2	PF13923	86 - 128	2.6e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	87 - 128	1.6e-07	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	101 - 129	1.1e-07	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	102 - 131	8.9e-06	Anaphase-promoting complex subunit 11 RING-H2 finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17245 AT5G47610
fragaria_vesca	FvH4_5g10181
malus_domestica	MD06G1127400.v1.1 MD10G1185300.v1.1 MD14G1142700.v1.1
prunus_persica	Prupe.5G137200_v2.0.a1
pyrus_communis	pycom06g11720
rosa_chinensis	RchiOBHm_Chr7g0188061
rosa_laevigata	RLG00000004730
rosa_multiflora	Rmu_ssc0000422.1_g000018
rosa_roxburghii	Rroxscaffold_3G00266770
rosa_rugosa	Rorug06G0487900
rosa_samantha	Rh7AG092200 Rh7BG093800 Rh7CG093100
rosa_wichuraiana	Rw7G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	343
AccII	CGCG	2 cut(s)	75, 153
AcuI	CTGAAG	1 cut(s)	248
AcvI	CACGTG	1 cut(s)	393
AdeI	CACNNNGTG	1 cut(s)	88
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	22, 91
AjiI	CACGTC	1 cut(s)	433
AjnI	CCWGG	1 cut(s)	350
AleI	CACNNNNGTG	2 cut(s)	209, 431
AluBI	AGCT	4 cut(s)	100, 160, 226, 238
AluI	AGCT	4 cut(s)	100, 160, 226, 238
AoxI	GGCC	2 cut(s)	43, 348
ApeKI	GCWGC	8 cut(s)	63, 97, 111, 114, 117, 157, 176, 248
AspLEI	GCGC	2 cut(s)	38, 263
AspS9I	GGNCC	3 cut(s)	4, 200, 439
AsuHPI	GGTGA	1 cut(s)	74
AvaII	GGWCC	3 cut(s)	4, 200, 439
BauI	CACGAG	1 cut(s)	140
BbrPI	CACGTG	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	351
BbvI	GCAGC	8 cut(s)	50, 109, 123, 126, 129, 169, 188, 260
BccI	CCATC	3 cut(s)	65, 188, 281
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	352
BfaI	CTAG	1 cut(s)	86
Bme1390I	CCNGG	1 cut(s)	352
Bme18I	GGWCC	3 cut(s)	4, 200, 439
BmgBI	CACGTC	1 cut(s)	433
BmgT120I	GGNCC	3 cut(s)	4, 200, 439
BmiI	GGNNCC	4 cut(s)	183, 201, 202, 329
BmrFI	CCNGG	1 cut(s)	352
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	146
BsaAI	YACGTR	1 cut(s)	393
BsaJI	CCNNGG	2 cut(s)	40, 73
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 91
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	2 cut(s)	40, 73
BseGI	GGATG	3 cut(s)	12, 57, 292
BseLI	CCNNNNNNNGG	2 cut(s)	22, 91
BseRI	GAGGAG	2 cut(s)	8, 107
BseXI	GCAGC	8 cut(s)	50, 109, 123, 126, 129, 169, 188, 260
BsgI	GTGCAG	1 cut(s)	176
Bsh1236I	CGCG	2 cut(s)	75, 153
Bsh1285I	CGRYCG	1 cut(s)	106
BshFI	GGCC	2 cut(s)	45, 350
BsiEI	CGRYCG	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	221, 455
BslFI	GGGAC	1 cut(s)	213
BslI	CCNNNNNNNGG	2 cut(s)	22, 91
BsmFI	GGGAC	1 cut(s)	213
BsnI	GGCC	2 cut(s)	45, 350
BspANI	GGCC	2 cut(s)	45, 350
BspFNI	CGCG	2 cut(s)	75, 153
BspLI	GGNNCC	4 cut(s)	183, 201, 202, 329
BssECI	CCNNGG	2 cut(s)	40, 73
BssNAI	GTATAC	1 cut(s)	344
BssSI	CACGAG	1 cut(s)	140
Bst1107I	GTATAC	1 cut(s)	344
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	373
BstBAI	YACGTR	1 cut(s)	393
BstC8I	GCNNGC	3 cut(s)	151, 155, 240
BstDSI	CCRYGG	1 cut(s)	73
BstENI	CCTNNNNNAGG	1 cut(s)	89
BstF5I	GGATG	3 cut(s)	12, 57, 292
BstFNI	CGCG	2 cut(s)	75, 153
BstHHI	GCGC	2 cut(s)	38, 263
BstMCI	CGRYCG	1 cut(s)	106
BstMWI	GCNNNNNNNGC	9 cut(s)	42, 72, 114, 117, 179, 239, 248, 260, 267
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstUI	CGCG	2 cut(s)	75, 153
BstV1I	GCAGC	8 cut(s)	50, 109, 123, 126, 129, 169, 188, 260
BstV2I	GAAGAC	1 cut(s)	351
BstXI	CCANNNNNNTGG	1 cut(s)	433
BstZ17I	GTATAC	1 cut(s)	344
BsuRI	GGCC	2 cut(s)	45, 350
BtgI	CCRYGG	1 cut(s)	73
BtrI	CACGTC	1 cut(s)	433
BtsCI	GGATG	3 cut(s)	12, 57, 292
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	3 cut(s)	151, 155, 240
CfoI	GCGC	2 cut(s)	38, 263
Cfr13I	GGNCC	3 cut(s)	4, 200, 439
Cfr42I	CCGCGG	1 cut(s)	76
CseI	GACGC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	1 cut(s)	323
CviQI	GTAC	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	373
EarI	CTCTTC	1 cut(s)	373
EciI	GGCGGA	3 cut(s)	248, 269, 402
Eco147I	AGGCCT	1 cut(s)	350
Eco47I	GGWCC	3 cut(s)	4, 200, 439
Eco57I	CTGAAG	1 cut(s)	248
Eco72I	CACGTG	1 cut(s)	393
EcoNI	CCTNNNNNAGG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	200
EcoRII	CCWGG	1 cut(s)	350
FaeI	CATG	1 cut(s)	326
FaiI	YATR	2 cut(s)	324, 344
FaqI	GGGAC	1 cut(s)	213
FatI	CATG	1 cut(s)	322
FauI	CCCGC	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	343
FokI	GGATG	2 cut(s)	44, 299
FspBI	CTAG	1 cut(s)	86
GlaI	GCGC	2 cut(s)	37, 262
HaeIII	GGCC	2 cut(s)	45, 350
HapII	CCGG	2 cut(s)	221, 455
HgaI	GACGC	1 cut(s)	142
HhaI	GCGC	2 cut(s)	38, 263
Hin1II	CATG	1 cut(s)	326
Hin6I	GCGC	2 cut(s)	36, 261
HinP1I	GCGC	2 cut(s)	36, 261
HpaII	CCGG	2 cut(s)	221, 455
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	2 cut(s)	214, 344
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	140, 163
Hpy8I	GTNNAC	2 cut(s)	214, 344
Hpy99I	CGWCG	2 cut(s)	390, 434
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	3 cut(s)	380, 392, 432
HpyCH4V	TGCA	1 cut(s)	157
HpyF10VI	GCNNNNNNNGC	9 cut(s)	42, 72, 114, 117, 179, 239, 248, 260, 267
HpySE526I	ACGT	3 cut(s)	380, 392, 432
Hsp92II	CATG	1 cut(s)	326
HspAI	GCGC	2 cut(s)	36, 261
KflI	GGGWCCC	1 cut(s)	200
KspI	CCGCGG	1 cut(s)	76
LmnI	GCTCC	5 cut(s)	94, 187, 223, 235, 472
LpnPI	CCDG	9 cut(s)	143, 194, 199, 224, 234, 332, 337, 364, 468
Lsp1109I	GCAGC	8 cut(s)	50, 109, 123, 126, 129, 169, 188, 260
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	86
MaeII	ACGT	3 cut(s)	380, 392, 432
MboII	GAAGA	2 cut(s)	351, 360
MmeI	TCCRAC	3 cut(s)	255, 288, 401
MslI	CAYNNNNRTG	2 cut(s)	209, 431
MspA1I	CMGCKG	4 cut(s)	63, 75, 179, 251
MspI	CCGG	2 cut(s)	221, 455
MspR9I	CCNGG	1 cut(s)	352
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	2 cut(s)	75, 153
MwoI	GCNNNNNNNGC	9 cut(s)	42, 72, 114, 117, 179, 239, 248, 260, 267
NlaIII	CATG	1 cut(s)	326
NlaIV	GGNNCC	4 cut(s)	183, 201, 202, 329
NmeAIII	GCCGAG	1 cut(s)	21
OliI	CACNNNNGTG	2 cut(s)	209, 431
PceI	AGGCCT	1 cut(s)	350
PmaCI	CACGTG	1 cut(s)	393
PmlI	CACGTG	1 cut(s)	393
Ppu21I	YACGTR	1 cut(s)	393
PpuMI	RGGWCCY	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	200
Psp6I	CCWGG	1 cut(s)	350
PspCI	CACGTG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	4 cut(s)	183, 201, 202, 329
PspPI	GGNCC	3 cut(s)	4, 200, 439
PspPPI	RGGWCCY	1 cut(s)	200
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	2 cut(s)	209, 431
SacII	CCGCGG	1 cut(s)	76
Sau96I	GGNCC	3 cut(s)	4, 200, 439
ScrFI	CCNGG	1 cut(s)	352
SetI	ASST	9 cut(s)	87, 102, 162, 228, 240, 317, 383, 395, 435
SfaNI	GCATC	1 cut(s)	145
Sfr303I	CCGCGG	1 cut(s)	76
SgrBI	CCGCGG	1 cut(s)	76
SinI	GGWCC	3 cut(s)	4, 200, 439
SmiMI	CAYNNNNRTG	2 cut(s)	209, 431
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
SseBI	AGGCCT	1 cut(s)	350
SspMI	CTAG	1 cut(s)	86
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	3 cut(s)	383, 395, 435
TaqI	TCGA	1 cut(s)	102
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	8 cut(s)	56, 78, 111, 176, 182, 254, 418, 421
TscAI	CASTG	1 cut(s)	344
TseI	GCWGC	8 cut(s)	63, 97, 111, 114, 117, 157, 176, 248
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	344
VpaK11BI	GGWCC	3 cut(s)	4, 200, 439
XagI	CCTNNNNNAGG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	343
XspI	CTAG	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.