Rw7G007970

RING-H2 finger protein ATL79-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0014108
Physical Location & Seq
Reverse (-)
7262638 .. 7263732
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G007970.1

Sequence Viewer

Length: 675 bp
ATGAGACCACCACCGAGAATACTACTAGAAGCGGCAGTAGCAGTAGCCGAGTTCAGCGGCACAGTCCACTTCTCTCCACCACCACTCTCCACCTCGCCACCTCCGACGCCAGCGCCATGCGTGGCTCACGCCTGCCGCTGGTGGCCCTACTCCGGCTCTAAAGAGTTCGAGGCCAACGCAGCCATGGTCCTCATCATCCTCCTCTCGGCTCTCATCTGCGCCCTCGGCCTCAACGCCGCCATCCGCTGCTTCCTCCGCGGCACTCACCTAGTGGAGGAGCAGCTCGACCGCCGCAGCAGCAGCAACCCTACCCAGACGCATCACGAGTTGGCTCGCGTGCAGCTCAAGACCAATGCGGCAGCGGCTCCCTGCTTTGATGGGGGACCCACGCTGGTGTACTCGCCGGAGATGAAGGCGGAGCTGGCTGGGGCGGCGGCGGAGTGCGCCATTTGCTTGTCGGAGTTCGTGGATGGGGAGGGGATAAGGGTGTTGGAGAGGTGTAAGCATGGGTTCCACGCCCACTGTATACAGGCCTGGCTGTCTTCTCACTCTTCTTGTCCAACGTGCCGTCGCACGTGCCTCCCTCCCTCCCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCAATCCACCGACGTGGAGGACCAACCGCCCTTGACGGAAATTATTGCTCCGTGA

Protein Analysis

224

Amino Acids

23.97

Weight (kDa)

6.12

Isoelectric Point (pI)

65.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 147 - 190 3e-14 Ring finger domain
zf-RING_11 PF17123 147 - 176 1.3e-10 RING-like zinc finger
zf-C3HC4_2 PF13923 147 - 189 4.9e-09 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 148 - 189 3e-07 Zinc finger, C3HC4 type (RING finger)
zf-rbx1 PF12678 162 - 190 1.5e-07 RING-H2 zinc finger domain
zf-ANAPC11 PF12861 163 - 192 1e-05 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0014108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17245 AT5G47610
fragaria_vesca FvH4_5g10181
malus_domestica MD06G1127400.v1.1 MD10G1185300.v1.1 MD14G1142700.v1.1
prunus_persica Prupe.5G137200_v2.0.a1
pyrus_communis pycom06g11720
rosa_chinensis RchiOBHm_Chr7g0188061
rosa_laevigata RLG00000004730
rosa_multiflora Rmu_ssc0000422.1_g000018
rosa_roxburghii Rroxscaffold_3G00266770
rosa_rugosa Rorug06G0487900
rosa_samantha Rh7AG092200 Rh7BG093800 Rh7CG093100
rosa_wichuraiana Rw7G007970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 526
AccII CGCG 2 cut(s) 258, 336
AcvI CACGTG 1 cut(s) 576
AcyI GRCGYC 1 cut(s) 107
AdeI CACNNNGTG 1 cut(s) 271
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 4 cut(s) 138, 152, 205, 274
AjiI CACGTC 1 cut(s) 634
AjnI CCWGG 1 cut(s) 533
AleI CACNNNNGTG 2 cut(s) 392, 632
AluBI AGCT 3 cut(s) 283, 343, 421
AluI AGCT 3 cut(s) 283, 343, 421
AoxI GGCC 4 cut(s) 143, 171, 226, 531
ApeKI GCWGC 8 cut(s) 179, 246, 280, 294, 297, 300, 340, 359
AspLEI GCGC 3 cut(s) 115, 221, 446
AspS9I GGNCC 4 cut(s) 144, 187, 383, 640
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 3 cut(s) 187, 383, 640
BauI CACGAG 1 cut(s) 323
BbrPI CACGTG 1 cut(s) 576
BbsI GAAGAC 1 cut(s) 534
BbvI GCAGC 8 cut(s) 191, 233, 292, 306, 309, 312, 352, 371
BccI CCATC 3 cut(s) 248, 371, 464
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 1 cut(s) 535
BfaI CTAG 2 cut(s) 26, 269
BfoI RGCGCY 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 535
Bme18I GGWCC 3 cut(s) 187, 383, 640
BmgBI CACGTC 1 cut(s) 634
BmgT120I GGNCC 4 cut(s) 144, 187, 383, 640
BmiI GGNNCC 4 cut(s) 366, 384, 385, 512
BmrFI CCNGG 1 cut(s) 535
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 534
BpuEI CTTGAG 1 cut(s) 329
BsaAI YACGTR 1 cut(s) 576
BsaHI GRCGYC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 183, 223, 256
Bsc4I CCNNNNNNNGG 4 cut(s) 138, 152, 205, 274
BseBI CCWGG 1 cut(s) 535
BseDI CCNNGG 3 cut(s) 183, 223, 256
BseGI GGATG 3 cut(s) 195, 240, 475
BseLI CCNNNNNNNGG 4 cut(s) 138, 152, 205, 274
BseRI GAGGAG 8 cut(s) 191, 290, 585, 588, 591, 594, 597, 600
BseXI GCAGC 8 cut(s) 191, 233, 292, 306, 309, 312, 352, 371
BseYI CCCAGC 1 cut(s) 425
BsgI GTGCAG 1 cut(s) 359
Bsh1236I CGCG 2 cut(s) 258, 336
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 4 cut(s) 145, 173, 228, 533
BsiEI CGRYCG 1 cut(s) 289
BsiSI CCGG 2 cut(s) 153, 404
BslFI GGGAC 1 cut(s) 396
BslI CCNNNNNNNGG 4 cut(s) 138, 152, 205, 274
BsmFI GGGAC 1 cut(s) 396
BsnI GGCC 4 cut(s) 145, 173, 228, 533
Bsp19I CCATGG 1 cut(s) 183
BspANI GGCC 4 cut(s) 145, 173, 228, 533
BspFNI CGCG 2 cut(s) 258, 336
BspLI GGNNCC 4 cut(s) 366, 384, 385, 512
BssECI CCNNGG 3 cut(s) 183, 223, 256
BssNAI GTATAC 1 cut(s) 527
BssNI GRCGYC 1 cut(s) 107
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 527
Bst2BI CACGAG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 535
Bst4CI ACNGT 2 cut(s) 64, 524
Bst6I CTCTTC 1 cut(s) 556
BstACI GRCGYC 1 cut(s) 107
BstBAI YACGTR 1 cut(s) 576
BstC8I GCNNGC 5 cut(s) 111, 133, 334, 338, 423
BstDSI CCRYGG 2 cut(s) 183, 256
BstENI CCTNNNNNAGG 1 cut(s) 272
BstF5I GGATG 3 cut(s) 195, 240, 475
BstFNI CGCG 2 cut(s) 258, 336
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 3 cut(s) 115, 221, 446
BstMCI CGRYCG 1 cut(s) 289
BstNI CCWGG 1 cut(s) 535
BstSCI CCNGG 1 cut(s) 533
BstUI CGCG 2 cut(s) 258, 336
BstV1I GCAGC 8 cut(s) 191, 233, 292, 306, 309, 312, 352, 371
BstV2I GAAGAC 1 cut(s) 534
BstXI CCANNNNNNTGG 1 cut(s) 634
BstZ17I GTATAC 1 cut(s) 527
BsuRI GGCC 4 cut(s) 145, 173, 228, 533
BtgI CCRYGG 2 cut(s) 183, 256
BtrI CACGTC 1 cut(s) 634
BtsCI GGATG 3 cut(s) 195, 240, 475
BtsIMutI CAGTG 1 cut(s) 520
Cac8I GCNNGC 5 cut(s) 111, 133, 334, 338, 423
CfoI GCGC 3 cut(s) 115, 221, 446
Cfr13I GGNCC 4 cut(s) 144, 187, 383, 640
Cfr42I CCGCGG 1 cut(s) 259
CseI GACGC 2 cut(s) 115, 325
Csp6I GTAC 1 cut(s) 397
CviAII CATG 3 cut(s) 117, 184, 506
CviQI GTAC 1 cut(s) 397
DraIII CACNNNGTG 1 cut(s) 271
Eam1104I CTCTTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 556
EciI GGCGGA 3 cut(s) 431, 452, 603
Eco130I CCWWGG 1 cut(s) 183
Eco147I AGGCCT 1 cut(s) 533
Eco47I GGWCC 3 cut(s) 187, 383, 640
Eco72I CACGTG 1 cut(s) 576
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 533
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 3 cut(s) 120, 187, 509
FaiI YATR 4 cut(s) 118, 185, 507, 527
FaqI GGGAC 1 cut(s) 396
FatI CATG 3 cut(s) 116, 183, 505
FblI GTMKAC 1 cut(s) 526
FokI GGATG 3 cut(s) 182, 227, 482
FspBI CTAG 2 cut(s) 26, 269
GlaI GCGC 3 cut(s) 114, 220, 445
GsaI CCCAGC 1 cut(s) 429
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 4 cut(s) 145, 173, 228, 533
HapII CCGG 2 cut(s) 153, 404
HgaI GACGC 2 cut(s) 115, 325
HhaI GCGC 3 cut(s) 115, 221, 446
Hin1I GRCGYC 1 cut(s) 107
Hin1II CATG 3 cut(s) 120, 187, 509
Hin6I GCGC 3 cut(s) 113, 219, 444
HinP1I GCGC 3 cut(s) 113, 219, 444
HpaII CCGG 2 cut(s) 153, 404
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 3 cut(s) 67, 397, 527
Hpy188I TCNGA 2 cut(s) 105, 460
Hpy188III TCNNGA 2 cut(s) 323, 346
Hpy8I GTNNAC 3 cut(s) 67, 397, 527
Hpy99I CGWCG 3 cut(s) 109, 573, 635
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 2 cut(s) 64, 524
HpyCH4IV ACGT 3 cut(s) 563, 575, 633
HpyCH4V TGCA 1 cut(s) 340
HpySE526I ACGT 3 cut(s) 563, 575, 633
Hsp92I GRCGYC 1 cut(s) 107
Hsp92II CATG 3 cut(s) 120, 187, 509
HspAI GCGC 3 cut(s) 113, 219, 444
KflI GGGWCCC 1 cut(s) 383
KspI CCGCGG 1 cut(s) 259
LmnI GCTCC 4 cut(s) 277, 370, 418, 673
Lsp1109I GCAGC 8 cut(s) 191, 233, 292, 306, 309, 312, 352, 371
LweI GCATC 1 cut(s) 328
MaeI CTAG 2 cut(s) 26, 269
MaeII ACGT 3 cut(s) 563, 575, 633
MboII GAAGA 2 cut(s) 534, 543
MluCI AATT 1 cut(s) 660
MmeI TCCRAC 4 cut(s) 128, 438, 471, 584
MslI CAYNNNNRTG 2 cut(s) 392, 632
MspA1I CMGCKG 5 cut(s) 57, 138, 246, 258, 362
MspI CCGG 2 cut(s) 153, 404
MspR9I CCNGG 1 cut(s) 535
MvaI CCWGG 1 cut(s) 535
MvnI CGCG 2 cut(s) 258, 336
NcoI CCATGG 1 cut(s) 183
NlaIII CATG 3 cut(s) 120, 187, 509
NlaIV GGNNCC 4 cut(s) 366, 384, 385, 512
NmeAIII GCCGAG 3 cut(s) 73, 185, 204
OliI CACNNNNGTG 2 cut(s) 392, 632
PceI AGGCCT 1 cut(s) 533
PcsI WCGNNNNNNNCGW 1 cut(s) 101
PmaCI CACGTG 1 cut(s) 576
PmlI CACGTG 1 cut(s) 576
Ppu21I YACGTR 1 cut(s) 576
PpuMI RGGWCCY 1 cut(s) 383
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 533
PspCI CACGTG 1 cut(s) 576
PspFI CCCAGC 1 cut(s) 425
PspGI CCWGG 1 cut(s) 533
PspN4I GGNNCC 4 cut(s) 366, 384, 385, 512
PspPI GGNCC 4 cut(s) 144, 187, 383, 640
PspPPI RGGWCCY 1 cut(s) 383
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 2 cut(s) 392, 632
SacII CCGCGG 1 cut(s) 259
Sau96I GGNCC 4 cut(s) 144, 187, 383, 640
ScrFI CCNGG 1 cut(s) 535
SfaNI GCATC 1 cut(s) 328
Sfr303I CCGCGG 1 cut(s) 259
SgrBI CCGCGG 1 cut(s) 259
SinI GGWCC 3 cut(s) 187, 383, 640
SmiMI CAYNNNNRTG 2 cut(s) 392, 632
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 1 cut(s) 660
SseBI AGGCCT 1 cut(s) 533
SspMI CTAG 2 cut(s) 26, 269
StuI AGGCCT 1 cut(s) 533
StyD4I CCNGG 1 cut(s) 533
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 64, 524
TaiI ACGT 3 cut(s) 566, 578, 636
TaqI TCGA 2 cut(s) 168, 285
TasI AATT 1 cut(s) 660
TatI WGTACW 1 cut(s) 396
TscAI CASTG 1 cut(s) 527
TseI GCWGC 8 cut(s) 179, 246, 280, 294, 297, 300, 340, 359
TspDTI ATGAA 1 cut(s) 425
TspGWI ACGGA 2 cut(s) 660, 671
TspRI CASTG 1 cut(s) 527
VpaK11BI GGWCC 3 cut(s) 187, 383, 640
XagI CCTNNNNNAGG 1 cut(s) 272
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XmiI GTMKAC 1 cut(s) 526
XspI CTAG 2 cut(s) 26, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.