Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000422.1

Orthogroup ID

OG0014108

Physical Location & Seq

Genomic Coordinates Reverse (-)

77711 .. 78388

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000422.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgagaccaccaccgagaatactactagaagcggcagtagcagtagccgagttcagcggcacagtccacttctctccaccaccactctccacctcgccacctccaacgccagcgccatgcgtggctcacgcctgccgctggtggccctactccggctctaaagagttcgaggccaacgcagccatggtcctcatcatcctcctctcggctctcatctgcgccctcggcctcaacgccgccatccgctgcttcctccgcggcactcacctagtggaggagcagctcgaccgccgcagcagcagcaaccctacccagacgcatcacgagttggctcgcgtgcagctcaagaccaatgcggcagcggctccctgctttgatgggggacccacgctggtgtactcgccggagatgaaggcggagctggcgggggcagcggcggagtgcgccatttgcttgtcggagttcgtggatggggaggggataagggtgttggagaggtgtaagcatgggttccacgcgcactgtatacaggcctggctgtcttctcactcttcttgtccaacgtgccgtcgcacgtgcctccctccctcccctcctcctcctcctcctcctcctccgccgccgcaatccaccgacgtggaggaccaaccgcccttgacggaaattattgctccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

225

Amino Acids

24.07

Weight (kDa)

6.12

Isoelectric Point (pI)

66.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17245 AT5G47610
fragaria_vesca	FvH4_5g10181
malus_domestica	MD06G1127400.v1.1 MD10G1185300.v1.1 MD14G1142700.v1.1
prunus_persica	Prupe.5G137200_v2.0.a1
pyrus_communis	pycom06g11720
rosa_chinensis	RchiOBHm_Chr7g0188061
rosa_laevigata	RLG00000004730
rosa_multiflora	Rmu_ssc0000422.1_g000018
rosa_roxburghii	Rroxscaffold_3G00266770
rosa_rugosa	Rorug06G0487900
rosa_samantha	Rh7AG092200 Rh7BG093800 Rh7CG093100
rosa_wichuraiana	Rw7G007970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	526
AccII	CGCG	3 cut(s)	258, 336, 518
AcvI	CACGTG	1 cut(s)	576
AdeI	CACNNNGTG	1 cut(s)	271
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	4 cut(s)	138, 152, 205, 274
AjiI	CACGTC	1 cut(s)	637
AjnI	CCWGG	1 cut(s)	533
AleI	CACNNNNGTG	2 cut(s)	392, 635
AluBI	AGCT	3 cut(s)	283, 343, 421
AluI	AGCT	3 cut(s)	283, 343, 421
AoxI	GGCC	4 cut(s)	143, 171, 226, 531
ApeKI	GCWGC	9 cut(s)	179, 246, 280, 294, 297, 300, 340, 359, 431
AspLEI	GCGC	4 cut(s)	115, 221, 446, 520
AspS9I	GGNCC	4 cut(s)	144, 187, 383, 643
AsuHPI	GGTGA	1 cut(s)	257
AvaII	GGWCC	3 cut(s)	187, 383, 643
BauI	CACGAG	1 cut(s)	323
BbrPI	CACGTG	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	534
BbvI	GCAGC	9 cut(s)	191, 233, 292, 306, 309, 312, 352, 371, 443
BccI	CCATC	3 cut(s)	248, 371, 464
BceAI	ACGGC	1 cut(s)	552
BciT130I	CCWGG	1 cut(s)	535
BfaI	CTAG	2 cut(s)	26, 269
BfoI	RGCGCY	1 cut(s)	116
Bme1390I	CCNGG	1 cut(s)	535
Bme18I	GGWCC	3 cut(s)	187, 383, 643
BmgBI	CACGTC	1 cut(s)	637
BmgT120I	GGNCC	4 cut(s)	144, 187, 383, 643
BmiI	GGNNCC	4 cut(s)	366, 384, 385, 512
BmrFI	CCNGG	1 cut(s)	535
BmsI	GCATC	1 cut(s)	328
BpiI	GAAGAC	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	576
BsaJI	CCNNGG	3 cut(s)	183, 223, 256
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 152, 205, 274
BseBI	CCWGG	1 cut(s)	535
BseDI	CCNNGG	3 cut(s)	183, 223, 256
BseGI	GGATG	3 cut(s)	195, 240, 475
BseLI	CCNNNNNNNGG	4 cut(s)	138, 152, 205, 274
BseRI	GAGGAG	9 cut(s)	191, 290, 585, 588, 591, 594, 597, 600, 603
BseXI	GCAGC	9 cut(s)	191, 233, 292, 306, 309, 312, 352, 371, 443
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	3 cut(s)	258, 336, 518
Bsh1285I	CGRYCG	1 cut(s)	289
BshFI	GGCC	4 cut(s)	145, 173, 228, 533
BsiEI	CGRYCG	1 cut(s)	289
BsiSI	CCGG	2 cut(s)	153, 404
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	4 cut(s)	138, 152, 205, 274
BsmFI	GGGAC	1 cut(s)	396
BsnI	GGCC	4 cut(s)	145, 173, 228, 533
Bsp19I	CCATGG	1 cut(s)	183
BspANI	GGCC	4 cut(s)	145, 173, 228, 533
BspFNI	CGCG	3 cut(s)	258, 336, 518
BspLI	GGNNCC	4 cut(s)	366, 384, 385, 512
BssECI	CCNNGG	3 cut(s)	183, 223, 256
BssNAI	GTATAC	1 cut(s)	527
BssSI	CACGAG	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	183
Bst1107I	GTATAC	1 cut(s)	527
Bst2BI	CACGAG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	535
Bst4CI	ACNGT	2 cut(s)	64, 524
Bst6I	CTCTTC	1 cut(s)	556
BstBAI	YACGTR	1 cut(s)	576
BstC8I	GCNNGC	5 cut(s)	111, 133, 334, 338, 423
BstDSI	CCRYGG	2 cut(s)	183, 256
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstF5I	GGATG	3 cut(s)	195, 240, 475
BstFNI	CGCG	3 cut(s)	258, 336, 518
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	4 cut(s)	115, 221, 446, 520
BstMCI	CGRYCG	1 cut(s)	289
BstNI	CCWGG	1 cut(s)	535
BstSCI	CCNGG	1 cut(s)	533
BstUI	CGCG	3 cut(s)	258, 336, 518
BstV1I	GCAGC	9 cut(s)	191, 233, 292, 306, 309, 312, 352, 371, 443
BstV2I	GAAGAC	1 cut(s)	534
BstXI	CCANNNNNNTGG	1 cut(s)	637
BstZ17I	GTATAC	1 cut(s)	527
BsuRI	GGCC	4 cut(s)	145, 173, 228, 533
BtgI	CCRYGG	2 cut(s)	183, 256
BtrI	CACGTC	1 cut(s)	637
BtsCI	GGATG	3 cut(s)	195, 240, 475
BtsIMutI	CAGTG	1 cut(s)	520
Cac8I	GCNNGC	5 cut(s)	111, 133, 334, 338, 423
CfoI	GCGC	4 cut(s)	115, 221, 446, 520
Cfr13I	GGNCC	4 cut(s)	144, 187, 383, 643
Cfr42I	CCGCGG	1 cut(s)	259
CseI	GACGC	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	3 cut(s)	117, 184, 506
CviQI	GTAC	1 cut(s)	397
DraIII	CACNNNGTG	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	556
EarI	CTCTTC	1 cut(s)	556
EciI	GGCGGA	3 cut(s)	431, 452, 606
Eco130I	CCWWGG	1 cut(s)	183
Eco147I	AGGCCT	1 cut(s)	533
Eco47I	GGWCC	3 cut(s)	187, 383, 643
Eco72I	CACGTG	1 cut(s)	576
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	3 cut(s)	120, 187, 509
FaiI	YATR	4 cut(s)	118, 185, 507, 527
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	3 cut(s)	116, 183, 505
FauI	CCCGC	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	526
FokI	GGATG	3 cut(s)	182, 227, 482
FspBI	CTAG	2 cut(s)	26, 269
GlaI	GCGC	4 cut(s)	114, 220, 445, 519
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	4 cut(s)	145, 173, 228, 533
HapII	CCGG	2 cut(s)	153, 404
HgaI	GACGC	1 cut(s)	325
HhaI	GCGC	4 cut(s)	115, 221, 446, 520
Hin1II	CATG	3 cut(s)	120, 187, 509
Hin6I	GCGC	4 cut(s)	113, 219, 444, 518
HinP1I	GCGC	4 cut(s)	113, 219, 444, 518
HpaII	CCGG	2 cut(s)	153, 404
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	3 cut(s)	67, 397, 527
Hpy188I	TCNGA	1 cut(s)	460
Hpy188III	TCNNGA	2 cut(s)	323, 346
Hpy8I	GTNNAC	3 cut(s)	67, 397, 527
Hpy99I	CGWCG	2 cut(s)	573, 638
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	2 cut(s)	64, 524
HpyCH4IV	ACGT	3 cut(s)	563, 575, 636
HpyCH4V	TGCA	1 cut(s)	340
HpySE526I	ACGT	3 cut(s)	563, 575, 636
Hsp92II	CATG	3 cut(s)	120, 187, 509
HspAI	GCGC	4 cut(s)	113, 219, 444, 518
KflI	GGGWCCC	1 cut(s)	383
KspI	CCGCGG	1 cut(s)	259
LmnI	GCTCC	4 cut(s)	277, 370, 418, 676
Lsp1109I	GCAGC	9 cut(s)	191, 233, 292, 306, 309, 312, 352, 371, 443
LweI	GCATC	1 cut(s)	328
MaeI	CTAG	2 cut(s)	26, 269
MaeII	ACGT	3 cut(s)	563, 575, 636
MboII	GAAGA	2 cut(s)	534, 543
MluCI	AATT	1 cut(s)	663
MmeI	TCCRAC	4 cut(s)	128, 438, 471, 584
MslI	CAYNNNNRTG	2 cut(s)	392, 635
MspA1I	CMGCKG	6 cut(s)	57, 138, 246, 258, 362, 434
MspI	CCGG	2 cut(s)	153, 404
MspR9I	CCNGG	1 cut(s)	535
MvaI	CCWGG	1 cut(s)	535
MvnI	CGCG	3 cut(s)	258, 336, 518
NcoI	CCATGG	1 cut(s)	183
NlaIII	CATG	3 cut(s)	120, 187, 509
NlaIV	GGNNCC	4 cut(s)	366, 384, 385, 512
NmeAIII	GCCGAG	3 cut(s)	73, 185, 204
OliI	CACNNNNGTG	2 cut(s)	392, 635
PceI	AGGCCT	1 cut(s)	533
PmaCI	CACGTG	1 cut(s)	576
PmlI	CACGTG	1 cut(s)	576
Ppu21I	YACGTR	1 cut(s)	576
PpuMI	RGGWCCY	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	383
Psp6I	CCWGG	1 cut(s)	533
PspCI	CACGTG	1 cut(s)	576
PspGI	CCWGG	1 cut(s)	533
PspN4I	GGNNCC	4 cut(s)	366, 384, 385, 512
PspPI	GGNCC	4 cut(s)	144, 187, 383, 643
PspPPI	RGGWCCY	1 cut(s)	383
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	2 cut(s)	392, 635
SacII	CCGCGG	1 cut(s)	259
Sau96I	GGNCC	4 cut(s)	144, 187, 383, 643
ScrFI	CCNGG	1 cut(s)	535
SfaNI	GCATC	1 cut(s)	328
Sfr303I	CCGCGG	1 cut(s)	259
SgrBI	CCGCGG	1 cut(s)	259
SinI	GGWCC	3 cut(s)	187, 383, 643
SmiMI	CAYNNNNRTG	2 cut(s)	392, 635
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	663
SseBI	AGGCCT	1 cut(s)	533
SspMI	CTAG	2 cut(s)	26, 269
StuI	AGGCCT	1 cut(s)	533
StyD4I	CCNGG	1 cut(s)	533
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	2 cut(s)	64, 524
TaiI	ACGT	3 cut(s)	566, 578, 639
TaqI	TCGA	2 cut(s)	168, 285
TasI	AATT	1 cut(s)	663
TatI	WGTACW	1 cut(s)	396
TscAI	CASTG	1 cut(s)	527
TseI	GCWGC	9 cut(s)	179, 246, 280, 294, 297, 300, 340, 359, 431
TspDTI	ATGAA	1 cut(s)	425
TspGWI	ACGGA	2 cut(s)	663, 674
TspRI	CASTG	1 cut(s)	527
VpaK11BI	GGWCC	3 cut(s)	187, 383, 643
XagI	CCTNNNNNAGG	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	181
XmiI	GTMKAC	1 cut(s)	526
XspI	CTAG	2 cut(s)	26, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.